Guide to the Human Genome
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Name: PATE3 Sequence: fasta or formatted (98aa) NCBI GI: 222136622
Description:

prostate and testis expressed 3

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1          3           1
 C cysteine           11.2         11           2
 D aspartate           3.1          3           1
 E glutamate           1.0          1           1
 F phenylalanine       7.1          7           1
 G glycine             3.1          3           1
 H histidine           3.1          3           1
 I isoleucine          4.1          4           1
 K lysine              4.1          4           1
 L leucine            12.2         12           2
 M methionine          4.1          4           1
 N asparagine          6.1          6           1
 P proline             0.0          0           0
 Q glutamine           5.1          5           1
 R arginine           10.2         10           2
 S serine              2.0          2           1
 T threonine           9.2          9           1
 V valine              5.1          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            6.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prostate and testis expressed 3 
ACRV1                 0.158   acrosomal vesicle protein 1 isoform c precursor [Homo...
ACRV1                 0.158   acrosomal vesicle protein 1 isoform e precursor [Homo...
ACRV1                 0.158   acrosomal vesicle protein 1 isoform a precursor [Homo...
ACRV1                 0.158   acrosomal vesicle protein 1 isoform f precursor [Homo...
ACRV1                 0.158   acrosomal vesicle protein 1 isoform d precursor [Homo...
ACRV1                 0.158   acrosomal vesicle protein 1 isoform j precursor [Homo...
ACRV1                 0.158   acrosomal vesicle protein 1 isoform b precursor [Homo...
PATE1                 0.147   expressed in prostate and testis 
PATE4                 0.126   prostate and testis expressed 4 
LY6G5B                0.053   lymphocyte antigen 6 complex G5B 
RGMB                  0.042   RGM domain family, member B 
GPIHBP1               0.026   glycosylphosphatidylinositol anchored high density l...
CD59                  0.026   CD59 antigen preproprotein 
CD59                  0.026   CD59 antigen preproprotein 
CD59                  0.026   CD59 antigen preproprotein 
CD59                  0.026   CD59 antigen preproprotein 
CD59                  0.026   CD59 antigen preproprotein 
CD59                  0.026   CD59 antigen preproprotein 
CD59                  0.026   CD59 antigen preproprotein 
CD59                  0.026   CD59 antigen preproprotein 
C9orf57               0.026   hypothetical protein LOC138240 
LY6G6C                0.021   lymphocyte antigen 6 complex G6C 
LY6G5C                0.021   lymphocyte antigen 6 complex G5C 
LYNX1                 0.016   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.016   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.016   Ly-6 neurotoxin-like protein 1 isoform c 
LOC100292543          0.011   PREDICTED: similar to RIKEN cDNA D730001G18 
LOC100288207          0.011   PREDICTED: similar to RIKEN cDNA D730001G18 
LOC100288207          0.011   PREDICTED: hypothetical protein XP_002342921 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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