Search of human proteins with 50811875

Search of human proteins with 50811875

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|50811875 suppressor of hairy wing homolog 4 isoform 3 [Homo
sapiens]
         (158 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|50811875 suppressor of hairy wing homolog 4 isoform 3 [Homo s...   321   2e-88
gi|50811871 suppressor of hairy wing homolog 4 isoform 1 [Homo s...   262   1e-70
gi|50811873 suppressor of hairy wing homolog 4 isoform 2 [Homo s...   234   2e-62
gi|24308171 zinc finger protein 280C [Homo sapiens]                   158   2e-39
gi|23397670 zinc finger protein 280B [Homo sapiens]                    74   4e-14
gi|18158228 zinc finger protein 280A [Homo sapiens]                    55   2e-08
gi|46397394 pogo transposable element with ZNF domain isoform 2 ...    41   4e-04
gi|46397392 pogo transposable element with ZNF domain isoform 3 ...    41   5e-04
gi|46397390 pogo transposable element with ZNF domain isoform 1 ...    41   5e-04
gi|63054848 coiled-coil domain containing 34 isoform 1 [Homo sap...    37   0.007
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int...    32   0.23 
gi|33946297 zinc finger protein 326 isoform 1 [Homo sapiens]           32   0.29 
gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens]                  31   0.38 
gi|56549643 nucleoporin 98kD isoform 3 [Homo sapiens]                  31   0.38 
gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens]                  31   0.38 
gi|21264369 nucleoporin 98kD isoform 2 [Homo sapiens]                  31   0.38 
gi|55750053 atrophin-1 [Homo sapiens]                                  31   0.50 
gi|55750041 atrophin-1 [Homo sapiens]                                  31   0.50 
gi|32967599 ankyrin 3 isoform 2 [Homo sapiens]                         31   0.50 
gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo...    30   0.66 
gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo...    30   0.66 
gi|58761548 tau tubulin kinase 1 [Homo sapiens]                        30   0.86 
gi|150170722 G protein-coupled receptor 50 [Homo sapiens]              30   0.86 
gi|55953110 retinoblastoma protein-binding zinc finger protein i...    30   0.86 
gi|20336260 retinoblastoma protein-binding zinc finger protein i...    30   0.86 
gi|20336258 retinoblastoma protein-binding zinc finger protein i...    30   0.86 
gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]      30   1.1  
gi|19743815 integrin beta 1 isoform 1B precursor [Homo sapiens]        30   1.1  
gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens]        30   1.1  
gi|19743823 integrin beta 1 isoform 1A precursor [Homo sapiens]        30   1.1  

>gi|50811875 suppressor of hairy wing homolog 4 isoform 3 [Homo
           sapiens]
          Length = 158

 Score =  321 bits (822), Expect = 2e-88
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MGDNPFQPKSNSKMAELFMECEEEELEPWQKKVKEVEDDDDDEPIFVGEISSSKPAISNI 60
           MGDNPFQPKSNSKMAELFMECEEEELEPWQKKVKEVEDDDDDEPIFVGEISSSKPAISNI
Sbjct: 1   MGDNPFQPKSNSKMAELFMECEEEELEPWQKKVKEVEDDDDDEPIFVGEISSSKPAISNI 60

Query: 61  LNRVNPSSYSRGLKNGALSRGITAAFKPTSQHYTNPTSNPVPASPINFHPESRSSDSSVI 120
           LNRVNPSSYSRGLKNGALSRGITAAFKPTSQHYTNPTSNPVPASPINFHPESRSSDSSVI
Sbjct: 61  LNRVNPSSYSRGLKNGALSRGITAAFKPTSQHYTNPTSNPVPASPINFHPESRSSDSSVI 120

Query: 121 VQPFSKPVSVSKTIRPAQGSIGCCLSISTVPSYNSGLS 158
           VQPFSKPVSVSKTIRPAQGSIGCCLSISTVPSYNSGLS
Sbjct: 121 VQPFSKPVSVSKTIRPAQGSIGCCLSISTVPSYNSGLS 158


>gi|50811871 suppressor of hairy wing homolog 4 isoform 1 [Homo
           sapiens]
          Length = 979

 Score =  262 bits (669), Expect = 1e-70
 Identities = 128/135 (94%), Positives = 131/135 (97%)

Query: 1   MGDNPFQPKSNSKMAELFMECEEEELEPWQKKVKEVEDDDDDEPIFVGEISSSKPAISNI 60
           MGDNPFQPKSNSKMAELFMECEEEELEPWQKKVKEVEDDDDDEPIFVGEISSSKPAISNI
Sbjct: 1   MGDNPFQPKSNSKMAELFMECEEEELEPWQKKVKEVEDDDDDEPIFVGEISSSKPAISNI 60

Query: 61  LNRVNPSSYSRGLKNGALSRGITAAFKPTSQHYTNPTSNPVPASPINFHPESRSSDSSVI 120
           LNRVNPSSYSRGLKNGALSRGITAAFKPTSQHYTNPTSNPVPASPINFHPESRSSDSSVI
Sbjct: 61  LNRVNPSSYSRGLKNGALSRGITAAFKPTSQHYTNPTSNPVPASPINFHPESRSSDSSVI 120

Query: 121 VQPFSKPVSVSKTIR 135
           VQPFSKP  ++ + R
Sbjct: 121 VQPFSKPGYITNSSR 135


>gi|50811873 suppressor of hairy wing homolog 4 isoform 2 [Homo
           sapiens]
          Length = 966

 Score =  234 bits (597), Expect = 2e-62
 Identities = 115/122 (94%), Positives = 118/122 (96%)

Query: 14  MAELFMECEEEELEPWQKKVKEVEDDDDDEPIFVGEISSSKPAISNILNRVNPSSYSRGL 73
           MAELFMECEEEELEPWQKKVKEVEDDDDDEPIFVGEISSSKPAISNILNRVNPSSYSRGL
Sbjct: 1   MAELFMECEEEELEPWQKKVKEVEDDDDDEPIFVGEISSSKPAISNILNRVNPSSYSRGL 60

Query: 74  KNGALSRGITAAFKPTSQHYTNPTSNPVPASPINFHPESRSSDSSVIVQPFSKPVSVSKT 133
           KNGALSRGITAAFKPTSQHYTNPTSNPVPASPINFHPESRSSDSSVIVQPFSKP  ++ +
Sbjct: 61  KNGALSRGITAAFKPTSQHYTNPTSNPVPASPINFHPESRSSDSSVIVQPFSKPGYITNS 120

Query: 134 IR 135
            R
Sbjct: 121 SR 122


>gi|24308171 zinc finger protein 280C [Homo sapiens]
          Length = 737

 Score =  158 bits (399), Expect = 2e-39
 Identities = 84/125 (67%), Positives = 96/125 (76%), Gaps = 1/125 (0%)

Query: 3   DNPFQPKSNSKMAELFMECEEEELEPWQKKVKEVEDDDDDEPIFVGEISSSKPAISNILN 62
           D PFQPK+ SKMAELFMECEEEELEPWQKKV+E +D+DDDE IFVGEISSSKPAISNILN
Sbjct: 4   DKPFQPKNISKMAELFMECEEEELEPWQKKVEETQDEDDDELIFVGEISSSKPAISNILN 63

Query: 63  RVNPSSYSRGLKNGALSRGITAAFKPTSQHYTNPTSNPVPASPINFHPESRSSDSSVIVQ 122
           R + SS S+G+K+   S GI   F+  SQ   +P SNPV ASP  FH  S+SS SSV V+
Sbjct: 64  RGHSSSSSKGIKSEPHSPGIPEIFRTASQRCRDPPSNPVAASP-RFHLVSKSSQSSVTVE 122

Query: 123 PFSKP 127
             SKP
Sbjct: 123 NASKP 127


>gi|23397670 zinc finger protein 280B [Homo sapiens]
          Length = 543

 Score = 74.3 bits (181), Expect = 4e-14
 Identities = 50/124 (40%), Positives = 68/124 (54%), Gaps = 21/124 (16%)

Query: 21  CEEEELEPWQKKV---KEVEDDD-------------DDEPIFVGEISSSKPAISNILNRV 64
           CEEE+    QK +   K+V+D+D             D E IFVG  S+SKP +SNILNRV
Sbjct: 5   CEEEKEPEPQKNIQETKQVDDEDAELIFVGVEHVNEDAELIFVGVTSNSKPVVSNILNRV 64

Query: 65  NPSSYSRGLKNGALSRGITAAFKPTS-QHYTNPTSNPVPASPINFHPESRSSDSSVIVQP 123
            P S+SR  K   L +      +P S +  T+     +PAS +    ESRS+DS +I++P
Sbjct: 65  TPGSWSRRKKYDHLRKDTARKLQPKSHETVTSEAVTVLPASQL----ESRSTDSPIIIEP 120

Query: 124 FSKP 127
            SKP
Sbjct: 121 LSKP 124


>gi|18158228 zinc finger protein 280A [Homo sapiens]
          Length = 542

 Score = 55.1 bits (131), Expect = 2e-08
 Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 21/129 (16%)

Query: 14  MAELFMECEEEELEPWQKKVKEVEDDDDD---------------EPIFVGEISSSKPAIS 58
           M ++F+  + E  +   ++ K+ E+DD+D               E +FVG IS+SKP +S
Sbjct: 1   MGDIFLCKKVESPKKNLRESKQREEDDEDPDLIYVGVEHVHRDAEVLFVGMISNSKPVVS 60

Query: 59  NILNRVNPSSYSRGLKNGALSRGITAAFKPTSQHYTNPTSNPVPASPINFHPESRSSDSS 118
           NILNRV P S SR  K     R   A     + H T+     +P S      E RS+DS 
Sbjct: 61  NILNRVTPGSKSRRKKGH--FRQYPAHVSQPANHVTSMAKAIMPVS----LSEGRSTDSP 114

Query: 119 VIVQPFSKP 127
           V ++  S+P
Sbjct: 115 VTMKSSSEP 123


>gi|46397394 pogo transposable element with ZNF domain isoform 2
           [Homo sapiens]
          Length = 1357

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 17/134 (12%)

Query: 16  ELFMECEEEELEPWQKKVKEVEDDDDDEPIFVGEISSSKPAISNILNRVNPSSYSRGLKN 75
           +LFMECEEEELEPWQK    +ED   ++   V + +++   +  +     P   ++    
Sbjct: 5   DLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTTTAGNPL--VQQGGQPLILTQNPAP 62

Query: 76  GALSRGITAAFKPTS--QHYTNPTSNPVPASPINFHPESRSSDSSVIVQPFSKPVSVSKT 133
           G  +       +P    Q+  + TS+PV + PI            +  Q F  PV   + 
Sbjct: 63  GLGTMVTQPVLRPVQVMQNANHVTSSPVASQPI-----------FITTQGF--PVRNVRP 109

Query: 134 IRPAQGSIGCCLSI 147
           ++ A   +G  L++
Sbjct: 110 VQNAMNQVGIVLNV 123


>gi|46397392 pogo transposable element with ZNF domain isoform 3
          [Homo sapiens]
          Length = 363

 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 17/23 (73%), Positives = 19/23 (82%)

Query: 16 ELFMECEEEELEPWQKKVKEVED 38
          +LFMECEEEELEPWQK    +ED
Sbjct: 5  DLFMECEEEELEPWQKISDVIED 27


>gi|46397390 pogo transposable element with ZNF domain isoform 1
          [Homo sapiens]
          Length = 1410

 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 17/23 (73%), Positives = 19/23 (82%)

Query: 16 ELFMECEEEELEPWQKKVKEVED 38
          +LFMECEEEELEPWQK    +ED
Sbjct: 5  DLFMECEEEELEPWQKISDVIED 27


>gi|63054848 coiled-coil domain containing 34 isoform 1 [Homo
           sapiens]
          Length = 373

 Score = 37.0 bits (84), Expect = 0.007
 Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 8/114 (7%)

Query: 7   QPKSNSKMAELFMECEEEELEPWQKKVKEVEDDDDDEPIFVGEISSSK--PAISNILNRV 64
           Q K+  K  E   +   EE E  +KK KE E     E     EI+  K    + N  ++ 
Sbjct: 229 QEKAKEKYQEWLKKKNAEECER-KKKEKEKEKQQQAEIQEKKEIAEKKFQEWLENAKHKP 287

Query: 65  NPSSYSRGLKNGALSRGITAAFKPTSQHYTNPTSNPVPASPINFHPESRSSDSS 118
            P++ S G  NG L+   +    P    Y     NP+P  PI+  P   + D S
Sbjct: 288 RPAAKSYGYANGKLTGFYSGNSYPEPAFY-----NPIPWKPIHMPPPKEAKDLS 336


>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
           interacting protein [Homo sapiens]
          Length = 1211

 Score = 32.0 bits (71), Expect = 0.23
 Identities = 33/138 (23%), Positives = 50/138 (36%), Gaps = 32/138 (23%)

Query: 6   FQPKSNSKMAELFMECEEEELEPW----------QKKVKEVEDDDDDEPIFVGEISSSKP 55
           F     S+  + F++   E+L P           +   +E+   DD       E SS+  
Sbjct: 670 FSHPVRSRDTDRFLDVLSEQLGPRVTIVDDFLTPENDYEEMSFHDDQGSFVTNERSSASD 729

Query: 56  AISNILNRVNPSSYSRGLKNGALSRGITAAFKPTSQHYTNPTSNPVPASPINFH---PES 112
            IS+                     G +  +   S H   P  +P P  P+ FH   P S
Sbjct: 730 CISSS------------------EEGSSLTYSSISDHIPPPPLSPPPPPPLPFHDAKPSS 771

Query: 113 RSSDSS-VIVQPFSKPVS 129
           RSSD S    Q  +KP++
Sbjct: 772 RSSDGSRGPAQALAKPLT 789


>gi|33946297 zinc finger protein 326 isoform 1 [Homo sapiens]
          Length = 582

 Score = 31.6 bits (70), Expect = 0.29
 Identities = 17/50 (34%), Positives = 33/50 (66%), Gaps = 3/50 (6%)

Query: 2   GDNPFQPKSNSKMAELFMECEEEELEPWQKKVKEVEDDDDDEPI-FVGEI 50
           G+NPF+ + +S+  ++  E +EE+ E   + ++E ED+D++E    VGE+
Sbjct: 468 GENPFEIQDHSQDQQI--EGDEEDEEKIDEPIEEEEDEDEEEEAEEVGEV 515


>gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens]
          Length = 1726

 Score = 31.2 bits (69), Expect = 0.38
 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 29/110 (26%)

Query: 40  DDDEPIFVGEISSSKPAI----------SNILNRVN--------PSSY-SRGLKNGALSR 80
           DDDEP         K +I          SN+ + VN        PS Y   G +   LS+
Sbjct: 563 DDDEPSLANGAFMPKKSIKKLVLKNLNNSNLFSPVNRDSENLASPSEYPENGERFSFLSK 622

Query: 81  GITAAFKP-------TSQHYTNPTSNPVPASPI---NFHPESRSSDSSVI 120
            +    +         S  YTNP + P+P +P    N H  S S D +++
Sbjct: 623 PVDENHQQDGDEDSLVSHFYTNPIAKPIPQTPESAGNKHSNSNSVDDTIV 672


>gi|56549643 nucleoporin 98kD isoform 3 [Homo sapiens]
          Length = 937

 Score = 31.2 bits (69), Expect = 0.38
 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 29/110 (26%)

Query: 40  DDDEPIFVGEISSSKPAI----------SNILNRVN--------PSSY-SRGLKNGALSR 80
           DDDEP         K +I          SN+ + VN        PS Y   G +   LS+
Sbjct: 580 DDDEPSLANGAFMPKKSIKKLVLKNLNNSNLFSPVNRDSENLASPSEYPENGERFSFLSK 639

Query: 81  GITAAFKP-------TSQHYTNPTSNPVPASPI---NFHPESRSSDSSVI 120
            +    +         S  YTNP + P+P +P    N H  S S D +++
Sbjct: 640 PVDENHQQDGDEDSLVSHFYTNPIAKPIPQTPESAGNKHSNSNSVDDTIV 689


>gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens]
          Length = 1800

 Score = 31.2 bits (69), Expect = 0.38
 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 29/110 (26%)

Query: 40  DDDEPIFVGEISSSKPAI----------SNILNRVN--------PSSY-SRGLKNGALSR 80
           DDDEP         K +I          SN+ + VN        PS Y   G +   LS+
Sbjct: 563 DDDEPSLANGAFMPKKSIKKLVLKNLNNSNLFSPVNRDSENLASPSEYPENGERFSFLSK 622

Query: 81  GITAAFKP-------TSQHYTNPTSNPVPASPI---NFHPESRSSDSSVI 120
            +    +         S  YTNP + P+P +P    N H  S S D +++
Sbjct: 623 PVDENHQQDGDEDSLVSHFYTNPIAKPIPQTPESAGNKHSNSNSVDDTIV 672


>gi|21264369 nucleoporin 98kD isoform 2 [Homo sapiens]
          Length = 920

 Score = 31.2 bits (69), Expect = 0.38
 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 29/110 (26%)

Query: 40  DDDEPIFVGEISSSKPAI----------SNILNRVN--------PSSY-SRGLKNGALSR 80
           DDDEP         K +I          SN+ + VN        PS Y   G +   LS+
Sbjct: 563 DDDEPSLANGAFMPKKSIKKLVLKNLNNSNLFSPVNRDSENLASPSEYPENGERFSFLSK 622

Query: 81  GITAAFKP-------TSQHYTNPTSNPVPASPI---NFHPESRSSDSSVI 120
            +    +         S  YTNP + P+P +P    N H  S S D +++
Sbjct: 623 PVDENHQQDGDEDSLVSHFYTNPIAKPIPQTPESAGNKHSNSNSVDDTIV 672


>gi|55750053 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 30.8 bits (68), Expect = 0.50
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 66  PSSYSRGLKNGAL----SRGITAAFKPTSQHYTNPTSNPVPASPINFHPESRSSDSSVIV 121
           PS ++ G   G L     +G T A  P   H   P S+  PA P+ F P S SS SS   
Sbjct: 330 PSPHAMGQGMGGLPPGPEKGPTLAPSP---HSLPPASSSAPAPPMRF-PYSSSSSSSAAA 385

Query: 122 QPFSKPVSVSKTIRPAQGSI 141
              S   S S +  PA  ++
Sbjct: 386 SSSSSSSSSSASPFPASQAL 405


>gi|55750041 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 30.8 bits (68), Expect = 0.50
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 66  PSSYSRGLKNGAL----SRGITAAFKPTSQHYTNPTSNPVPASPINFHPESRSSDSSVIV 121
           PS ++ G   G L     +G T A  P   H   P S+  PA P+ F P S SS SS   
Sbjct: 330 PSPHAMGQGMGGLPPGPEKGPTLAPSP---HSLPPASSSAPAPPMRF-PYSSSSSSSAAA 385

Query: 122 QPFSKPVSVSKTIRPAQGSI 141
              S   S S +  PA  ++
Sbjct: 386 SSSSSSSSSSASPFPASQAL 405


>gi|32967599 ankyrin 3 isoform 2 [Homo sapiens]
          Length = 1001

 Score = 30.8 bits (68), Expect = 0.50
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 9/54 (16%)

Query: 88  PTSQHYTNPTSNPVPASPINFHPESRSSDSSVIVQPFSKPVSVSKTIRPAQGSI 141
           PT  HYT PT          F  +   SD S I  P   P  +S  + P+QG+I
Sbjct: 731 PTGLHYTPPTP---------FQQDDYFSDISSIESPLRTPSRLSDGLVPSQGNI 775


>gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo
           sapiens]
          Length = 750

 Score = 30.4 bits (67), Expect = 0.66
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 63  RVNPSSYSRGLKNGALSRGITAAFKPTSQHYTNPTSNPVP------ASPINFHPESRSSD 116
           +V+P     G+  G L     AA  PTS H    T++P P      A P+N   + ++SD
Sbjct: 337 QVSPGGKLPGIPQGNLG----AAVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSD 392

Query: 117 SSVIVQPFS 125
                 P S
Sbjct: 393 GKSPTSPTS 401


>gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo
           sapiens]
          Length = 763

 Score = 30.4 bits (67), Expect = 0.66
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 63  RVNPSSYSRGLKNGALSRGITAAFKPTSQHYTNPTSNPVP------ASPINFHPESRSSD 116
           +V+P     G+  G L     AA  PTS H    T++P P      A P+N   + ++SD
Sbjct: 350 QVSPGGKLPGIPQGNLG----AAVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSD 405

Query: 117 SSVIVQPFS 125
                 P S
Sbjct: 406 GKSPTSPTS 414


>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
          Length = 1321

 Score = 30.0 bits (66), Expect = 0.86
 Identities = 14/39 (35%), Positives = 26/39 (66%)

Query: 5   PFQPKSNSKMAELFMECEEEELEPWQKKVKEVEDDDDDE 43
           P QP++N K  E   E +EEE E  +++ +E E+++++E
Sbjct: 724 PVQPQANGKEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 762


>gi|150170722 G protein-coupled receptor 50 [Homo sapiens]
          Length = 617

 Score = 30.0 bits (66), Expect = 0.86
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 80  RGITAAFKPTSQHYTNPTSNPVPASPINFHPESRSSDSSVIVQPFSKPVSVSKTIRPA 137
           +G +  FKP S H+   +SNP P +    H  + S   S      S P   +  I+PA
Sbjct: 454 KGDSVHFKPDSVHFKPASSNPKPIT--GHHVSAGSHSKSAFSAATSHPKPTTGHIKPA 509


>gi|55953110 retinoblastoma protein-binding zinc finger protein
          isoform c [Homo sapiens]
          Length = 1481

 Score = 30.0 bits (66), Expect = 0.86
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 7  QPKSNSKMAELFMECE---EEELEPWQKKVKEVEDDDDDEPIFVGEISSSKP 55
          QP+ + ++     E     EEE E  ++  +E EDDDDDE    GE  +S P
Sbjct: 48 QPEPDERLEAAACEVNDLGEEEEEEEEEDEEEEEDDDDDELEDEGEEEASMP 99


>gi|20336260 retinoblastoma protein-binding zinc finger protein
           isoform b [Homo sapiens]
          Length = 1682

 Score = 30.0 bits (66), Expect = 0.86
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 7   QPKSNSKMAELFMECE---EEELEPWQKKVKEVEDDDDDEPIFVGEISSSKP 55
           QP+ + ++     E     EEE E  ++  +E EDDDDDE    GE  +S P
Sbjct: 249 QPEPDERLEAAACEVNDLGEEEEEEEEEDEEEEEDDDDDELEDEGEEEASMP 300


>gi|20336258 retinoblastoma protein-binding zinc finger protein
           isoform a [Homo sapiens]
          Length = 1718

 Score = 30.0 bits (66), Expect = 0.86
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 7   QPKSNSKMAELFMECE---EEELEPWQKKVKEVEDDDDDEPIFVGEISSSKP 55
           QP+ + ++     E     EEE E  ++  +E EDDDDDE    GE  +S P
Sbjct: 249 QPEPDERLEAAACEVNDLGEEEEEEEEEDEEEEEDDDDDELEDEGEEEASMP 300


>gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]
          Length = 825

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 24  EELEPWQKKVKEVEDDDDDEPIFVGEISS-SKPAISNILNRVNPSSYSRGLKNGALSRGI 82
           EE +P  K++K +          VG +S+ S   I  I++  N  S    L+NG LS G+
Sbjct: 339 EEFQPVYKELKNLIPKSA-----VGTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEGV 393

Query: 83  TAAFKPTSQHYTNPT 97
           T ++K   ++  N T
Sbjct: 394 TISYKSYCKNGVNGT 408


>gi|19743815 integrin beta 1 isoform 1B precursor [Homo sapiens]
          Length = 789

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 24  EELEPWQKKVKEVEDDDDDEPIFVGEISS-SKPAISNILNRVNPSSYSRGLKNGALSRGI 82
           EE +P  K++K +          VG +S+ S   I  I++  N  S    L+NG LS G+
Sbjct: 339 EEFQPVYKELKNLIPKSA-----VGTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEGV 393

Query: 83  TAAFKPTSQHYTNPT 97
           T ++K   ++  N T
Sbjct: 394 TISYKSYCKNGVNGT 408


>gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens]
          Length = 798

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 24  EELEPWQKKVKEVEDDDDDEPIFVGEISS-SKPAISNILNRVNPSSYSRGLKNGALSRGI 82
           EE +P  K++K +          VG +S+ S   I  I++  N  S    L+NG LS G+
Sbjct: 339 EEFQPVYKELKNLIPKSA-----VGTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEGV 393

Query: 83  TAAFKPTSQHYTNPT 97
           T ++K   ++  N T
Sbjct: 394 TISYKSYCKNGVNGT 408


>gi|19743823 integrin beta 1 isoform 1A precursor [Homo sapiens]
          Length = 798

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 24  EELEPWQKKVKEVEDDDDDEPIFVGEISS-SKPAISNILNRVNPSSYSRGLKNGALSRGI 82
           EE +P  K++K +          VG +S+ S   I  I++  N  S    L+NG LS G+
Sbjct: 339 EEFQPVYKELKNLIPKSA-----VGTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEGV 393

Query: 83  TAAFKPTSQHYTNPT 97
           T ++K   ++  N T
Sbjct: 394 TISYKSYCKNGVNGT 408


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.308    0.126    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,790,787
Number of Sequences: 37866
Number of extensions: 322663
Number of successful extensions: 1823
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 1690
Number of HSP's gapped (non-prelim): 174
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.