Guide to the Human Genome
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Search of human proteins with 50539412

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|50539412 cellular modulator of immune recognition isoform 6
[Homo sapiens]
         (291 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|50539414 cellular modulator of immune recognition isoform 7 [...   609   e-174
gi|50539412 cellular modulator of immune recognition isoform 6 [...   609   e-174
gi|50539410 cellular modulator of immune recognition isoform 8 [...   609   e-174
gi|8923613 membrane-associated RING-CH protein I [Homo sapiens]       355   2e-98
gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1 ...    91   2e-18
gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1 ...    91   2e-18
gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo sapi...    82   4e-16
gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo sapi...    78   8e-15
gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2 ...    78   8e-15
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa...    73   3e-13
gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo sapi...    72   6e-13
gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]      72   7e-13
gi|154937342 ring finger protein 190 [Homo sapiens]                    62   8e-10
gi|154937340 ring finger protein 190 [Homo sapiens]                    62   8e-10
gi|12383066 axotrophin [Homo sapiens]                                  53   3e-07
gi|8923415 membrane-associated ring finger (C3HC4) 5 [Homo sapiens]    45   6e-05
gi|7706039 ring finger protein 181 [Homo sapiens]                      45   1e-04
gi|21389515 ring finger protein 145 [Homo sapiens]                     42   6e-04
gi|21314654 ring finger protein 139 [Homo sapiens]                     40   0.002
gi|157412255 praja 2, RING-H2 motif containing [Homo sapiens]          38   0.009
gi|49640011 tetratricopeptide repeat domain 3 [Homo sapiens]           37   0.020
gi|49640009 tetratricopeptide repeat domain 3 [Homo sapiens]           37   0.020
gi|7662244 DAZ interacting protein 3, zinc finger [Homo sapiens]       36   0.046
gi|150170725 zinc and ring finger 4 [Homo sapiens]                     34   0.17 
gi|7657522 ring finger protein 7 isoform 1 [Homo sapiens]              33   0.23 
gi|40807469 TRAF interacting protein [Homo sapiens]                    33   0.29 
gi|21539663 praja 1 isoform c [Homo sapiens]                           33   0.29 
gi|74048537 praja 1 isoform b [Homo sapiens]                           33   0.29 
gi|41281725 praja 1 isoform a [Homo sapiens]                           33   0.29 
gi|13569903 ring finger protein 32 [Homo sapiens]                      33   0.29 

>gi|50539414 cellular modulator of immune recognition isoform 7
           [Homo sapiens]
          Length = 291

 Score =  609 bits (1570), Expect = e-174
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 1   MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA 60
           MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
Sbjct: 1   MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA 60

Query: 61  PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT 120
           PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT
Sbjct: 61  PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT 120

Query: 121 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT 180
           RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT
Sbjct: 121 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT 180

Query: 181 AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN 240
           AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN
Sbjct: 181 AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN 240

Query: 241 CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV 291
           CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
Sbjct: 241 CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV 291


>gi|50539412 cellular modulator of immune recognition isoform 6
           [Homo sapiens]
          Length = 291

 Score =  609 bits (1570), Expect = e-174
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 1   MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA 60
           MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
Sbjct: 1   MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA 60

Query: 61  PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT 120
           PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT
Sbjct: 61  PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT 120

Query: 121 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT 180
           RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT
Sbjct: 121 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT 180

Query: 181 AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN 240
           AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN
Sbjct: 181 AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN 240

Query: 241 CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV 291
           CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
Sbjct: 241 CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV 291


>gi|50539410 cellular modulator of immune recognition isoform 8
           [Homo sapiens]
          Length = 291

 Score =  609 bits (1570), Expect = e-174
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 1   MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA 60
           MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
Sbjct: 1   MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA 60

Query: 61  PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT 120
           PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT
Sbjct: 61  PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT 120

Query: 121 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT 180
           RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT
Sbjct: 121 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT 180

Query: 181 AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN 240
           AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN
Sbjct: 181 AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN 240

Query: 241 CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV 291
           CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
Sbjct: 241 CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV 291


>gi|8923613 membrane-associated RING-CH protein I [Homo sapiens]
          Length = 272

 Score =  355 bits (912), Expect = 2e-98
 Identities = 172/241 (71%), Positives = 195/241 (80%), Gaps = 5/241 (2%)

Query: 51  KAGSPPSASAPAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQAC 110
           +A SP + +AP    S SR S+ PS+QDICRICHCEGD+ESPLITPC CTG+L FVHQ+C
Sbjct: 37  QASSPTTGTAPR---SQSRLSVCPSTQDICRICHCEGDEESPLITPCRCTGTLRFVHQSC 93

Query: 111 LQQWIKSSDTRCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVV 170
           L QWIKSSDTRCCELCKY+FIMETKLKPLRKWEKLQMT+SERRKI CSVTFHVIAITCVV
Sbjct: 94  LHQWIKSSDTRCCELCKYDFIMETKLKPLRKWEKLQMTTSERRKIFCSVTFHVIAITCVV 153

Query: 171 WSLYVLIDRTAEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLK 230
           WSLYVLIDRTAEEIKQG   G+LEWPFWTKLVVVAIGFTGGL+FMYVQCKVYVQLW+RLK
Sbjct: 154 WSLYVLIDRTAEEIKQGNDNGVLEWPFWTKLVVVAIGFTGGLVFMYVQCKVYVQLWRRLK 213

Query: 231 AYNRVIYVQNCPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIH 290
           AYNRVI+VQNCP+T+KK   EK+     N + K    +    T ++     E    E++ 
Sbjct: 214 AYNRVIFVQNCPDTAKK--LEKNFSCNVNTDIKDAVVVPVPQTGANSLPSAEGGPPEVVS 271

Query: 291 V 291
           V
Sbjct: 272 V 272


>gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1
           [Homo sapiens]
          Length = 246

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 53/176 (30%), Positives = 94/176 (53%), Gaps = 12/176 (6%)

Query: 64  VSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCC 123
           +S+  R   TPS    CRICH EG +   L++PC CTG+L  VH++CL++W+ SS+T  C
Sbjct: 48  LSTVIRALDTPSDGPFCRICH-EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYC 106

Query: 124 ELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEE 183
           ELC  EF +E + +PL +W K     +E+R + C +   +        S ++ +    + 
Sbjct: 107 ELCHTEFAVEKRPRPLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDH 166

Query: 184 IK---QGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVI 236
           ++   Q +A G++        + +A+ FT  +L+  V  + + QL+   +  N+ +
Sbjct: 167 LRLHSQLEAVGLI-------ALTIAL-FTIYVLWTLVSFRYHCQLYSEWRKTNQKV 214


>gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1
           [Homo sapiens]
          Length = 246

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 53/176 (30%), Positives = 94/176 (53%), Gaps = 12/176 (6%)

Query: 64  VSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCC 123
           +S+  R   TPS    CRICH EG +   L++PC CTG+L  VH++CL++W+ SS+T  C
Sbjct: 48  LSTVIRALDTPSDGPFCRICH-EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYC 106

Query: 124 ELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEE 183
           ELC  EF +E + +PL +W K     +E+R + C +   +        S ++ +    + 
Sbjct: 107 ELCHTEFAVEKRPRPLTEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDH 166

Query: 184 IK---QGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVI 236
           ++   Q +A G++        + +A+ FT  +L+  V  + + QL+   +  N+ +
Sbjct: 167 LRLHSQLEAVGLI-------ALTIAL-FTIYVLWTLVSFRYHCQLYSEWRKTNQKV 214


>gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo
           sapiens]
          Length = 253

 Score = 82.4 bits (202), Expect = 4e-16
 Identities = 38/95 (40%), Positives = 59/95 (62%), Gaps = 4/95 (4%)

Query: 64  VSSFSRTSITPS---SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT 120
           +S+  RT  T S    + +CRICH EG  +  L++PC CTG+L  +H++CL+ W+ SS+T
Sbjct: 52  LSTVVRTLATQSPFNDRPMCRICH-EGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNT 110

Query: 121 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKI 155
             CELC + F +E K +PL +W +      E+R +
Sbjct: 111 SYCELCHFRFAVERKPRPLVEWLRNPGPQHEKRTL 145


>gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo
           sapiens]
          Length = 910

 Score = 78.2 bits (191), Expect = 8e-15
 Identities = 31/56 (55%), Positives = 38/56 (67%)

Query: 75  SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 130
           + +DICR+C  EG  E PL  PC CTGS+ F+HQ CL QW+K S    CELCK+ F
Sbjct: 4   AEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 59


>gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2
           [Homo sapiens]
          Length = 176

 Score = 78.2 bits (191), Expect = 8e-15
 Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 64  VSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCC 123
           +S+  R   TPS    CRICH EG +   L++PC CTG+L  VH++CL++W+ SS+T  C
Sbjct: 48  LSTVIRALDTPSDGPFCRICH-EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYC 106

Query: 124 ELCKYEFIMETKLKPL 139
           ELC  EF +E + +PL
Sbjct: 107 ELCHTEFAVEKRPRPL 122


>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
           sapiens]
          Length = 402

 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 2/99 (2%)

Query: 77  QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF-IMETK 135
           Q IC+IC  +G ++  L+ PC C GS+ + HQ CL +WI    +  CELC Y + ++  K
Sbjct: 167 QPICKICF-QGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIAIK 225

Query: 136 LKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLY 174
           +K   +W+ + +T  E+ +++  +   +  I  V W L+
Sbjct: 226 MKQPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLW 264


>gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo
           sapiens]
          Length = 410

 Score = 72.0 bits (175), Expect = 6e-13
 Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 9/210 (4%)

Query: 79  ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF-IMETKLK 137
           +CRIC  +G ++  L++PC C GS+   HQ CL +WI       CELC Y++ ++    K
Sbjct: 162 LCRICF-QGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTK 220

Query: 138 PLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPF 197
              +W+ + +T  E+ ++  ++   +  I  + W ++     +A   +Q     I  +  
Sbjct: 221 NPLQWQAISLTVIEKVQVAAAILGSLFLIASISWLIWSTFSPSARWQRQDLLFQIC-YGM 279

Query: 198 WTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTE 257
           +  + VV IG     L ++    VY +++KR +A N+   V N  +T      +    T 
Sbjct: 280 YGFMDVVCIG-----LIIHEGPSVY-RIFKRWQAVNQQWKVLNYDKTKDLEDQKAGGRTN 333

Query: 258 PNFENKHGYGICHSDTNSSCCTEPEDTGAE 287
           P   +     I  S+  ++    PE   A+
Sbjct: 334 PRTSSSTQANIPSSEEETAGTPAPEQGPAQ 363


>gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]
          Length = 346

 Score = 71.6 bits (174), Expect = 7e-13
 Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 16/197 (8%)

Query: 55  PPSASAPAPVSSFSRTSITPSSQD-----ICRICHCEGDDESPLITPCHCTGSLHFVHQA 109
           PP A    P  +    S++ S         CRIC  +G ++  L++PC C GS+   HQ 
Sbjct: 80  PPPAPPLPPPGALDALSLSSSLDSGLRTPQCRICF-QGPEQGELLSPCRCDGSVRCTHQP 138

Query: 110 CLQQWIKSSDTRCCELC--KYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAIT 167
           CL +WI    +  CELC  KY+ +  +   PL +W+ + +T  E+ +I   V   +  + 
Sbjct: 139 CLIRWISERGSWSCELCYFKYQVLAISTKNPL-QWQAISLTVIEKVQIAAIVLGSLFLVA 197

Query: 168 CVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWK 227
            + W ++  +  +A+  +Q     I  +  +  + VV IG     L ++    VY +++K
Sbjct: 198 SISWLIWSSLSPSAKWQRQDLLFQIC-YGMYGFMDVVCIG-----LIIHEGSSVY-RIFK 250

Query: 228 RLKAYNRVIYVQNCPET 244
           R +A N+   V N  +T
Sbjct: 251 RWQAVNQQWKVLNYDKT 267


>gi|154937342 ring finger protein 190 [Homo sapiens]
          Length = 808

 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 9/98 (9%)

Query: 78  DICRICHCEGDDES-PLITPCHCTGSLHFVHQACLQQWIKSSDT--------RCCELCKY 128
           D+CRIC   G   S PL+ PC C GSL FVHQ CL++W+K   T        + CE+CK 
Sbjct: 657 DLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQ 716

Query: 129 EFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAI 166
             +++     + ++ +    S  + ++M S  + V+ +
Sbjct: 717 GLLVDLGDFNMIEFYQKHQQSQAQNELMNSGLYLVLLL 754


>gi|154937340 ring finger protein 190 [Homo sapiens]
          Length = 808

 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 9/98 (9%)

Query: 78  DICRICHCEGDDES-PLITPCHCTGSLHFVHQACLQQWIKSSDT--------RCCELCKY 128
           D+CRIC   G   S PL+ PC C GSL FVHQ CL++W+K   T        + CE+CK 
Sbjct: 657 DLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQ 716

Query: 129 EFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAI 166
             +++     + ++ +    S  + ++M S  + V+ +
Sbjct: 717 GLLVDLGDFNMIEFYQKHQQSQAQNELMNSGLYLVLLL 754


>gi|12383066 axotrophin [Homo sapiens]
          Length = 704

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 9/59 (15%)

Query: 78  DICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKS--------SDTRCCELCK 127
           D+CRIC       S L I PC CTGSL +VHQ C+++W+++             CELCK
Sbjct: 550 DLCRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCK 608


>gi|8923415 membrane-associated ring finger (C3HC4) 5 [Homo sapiens]
          Length = 278

 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 9/69 (13%)

Query: 80  CRICHCEGDDE--SPLITPCHCTGSLHFVHQACLQQWI------KSSDTRCCELCKYEF- 130
           C +C    +D+  +  + PC C GS  +VHQACLQ+W+       S+    C  C  E+ 
Sbjct: 14  CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYL 73

Query: 131 IMETKLKPL 139
           I+  KL P+
Sbjct: 74  IVFPKLGPV 82


>gi|7706039 ring finger protein 181 [Homo sapiens]
          Length = 153

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 9/76 (11%)

Query: 56  PSASAPAPVSSFSRTSITPSSQDI-CRICHCEGDDESPLIT-PCHCTGSLHFVHQACLQQ 113
           P  +A   V +  RT I  S  ++ C +C  E ++E   I  PCH     H  H +C+  
Sbjct: 51  PPPAAKTVVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCH-----HLFHSSCILP 105

Query: 114 WIKSSDTRCCELCKYE 129
           W+  S T  C LC+YE
Sbjct: 106 WL--SKTNSCPLCRYE 119


>gi|21389515 ring finger protein 145 [Homo sapiens]
          Length = 691

 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 78  DICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLK 137
           DIC IC+   D +S +ITPC      HF H  CL++W+   +T  C LC       ++L 
Sbjct: 563 DICAICY--QDMKSAVITPCS-----HFFHAGCLKKWLYVQET--CPLCHCHLKNSSQLP 613

Query: 138 PLRKWEKLQMTSSERRKIM 156
            L     LQ  +   + +M
Sbjct: 614 GLGTEPVLQPHAGAEQNVM 632


>gi|21314654 ring finger protein 139 [Homo sapiens]
          Length = 664

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 8/60 (13%)

Query: 78  DICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLK 137
           D+C IC+ E    S  ITPC+     H+ H  CL++W+   DT  C +C  +  +E  +K
Sbjct: 545 DVCAICYHEFTT-SARITPCN-----HYFHALCLRKWLYIQDT--CPMCHQKVYIEDDIK 596


>gi|157412255 praja 2, RING-H2 motif containing [Homo sapiens]
          Length = 708

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 14/108 (12%)

Query: 28  EKEREEQNEKTLGHFMSHSSNISKAGSPPSASA----PAPVSSFSRTSITPSSQDICRIC 83
           E+   +  E  L H  S + ++  A  P S  +    P  +     T+I    +  C IC
Sbjct: 580 EERLAQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAI--GQEQCCPIC 637

Query: 84  HCEG-DDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 130
             E   D+     PCH     HF H+ C+  W++ S T  C +C+  F
Sbjct: 638 CSEYIKDDIATELPCH-----HFFHKPCVSIWLQKSGT--CPVCRRHF 678


>gi|49640011 tetratricopeptide repeat domain 3 [Homo sapiens]
          Length = 2025

 Score = 37.0 bits (84), Expect = 0.020
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 11/130 (8%)

Query: 17   ISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASAPAPVSSFSRTSITP-- 74
            ++  +   + K+K    ++++T     +     S  GSP    AP+P +   +    P  
Sbjct: 1890 VTEHILDEQKKKKPNPGKDKRTYEPSSATPVTRSSQGSPSVVVAPSPKTKGQKAEDVPVR 1949

Query: 75   --SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 132
                   C ICH     ++  +  C      H  H+ C +QW+K      C  C+   ++
Sbjct: 1950 IALGASSCEICHEVFKSKNVRVLKCG-----HKYHKGCFKQWLKGQS--ACPACQGRDLL 2002

Query: 133  ETKLKPLRKW 142
              +    R W
Sbjct: 2003 TEESPSGRGW 2012


>gi|49640009 tetratricopeptide repeat domain 3 [Homo sapiens]
          Length = 2025

 Score = 37.0 bits (84), Expect = 0.020
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 11/130 (8%)

Query: 17   ISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASAPAPVSSFSRTSITP-- 74
            ++  +   + K+K    ++++T     +     S  GSP    AP+P +   +    P  
Sbjct: 1890 VTEHILDEQKKKKPNPGKDKRTYEPSSATPVTRSSQGSPSVVVAPSPKTKGQKAEDVPVR 1949

Query: 75   --SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 132
                   C ICH     ++  +  C      H  H+ C +QW+K      C  C+   ++
Sbjct: 1950 IALGASSCEICHEVFKSKNVRVLKCG-----HKYHKGCFKQWLKGQS--ACPACQGRDLL 2002

Query: 133  ETKLKPLRKW 142
              +    R W
Sbjct: 2003 TEESPSGRGW 2012


>gi|7662244 DAZ interacting protein 3, zinc finger [Homo sapiens]
          Length = 1208

 Score = 35.8 bits (81), Expect = 0.046
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 44   SHSSNISKAGSPP-------SASAPAPVSSFSRTSITPSSQDICRICHCEGDDESPLITP 96
            SHS +   A  PP       ++  PA     S        ++ C ICH     E+  + P
Sbjct: 1105 SHSPSQPDAAQPPKPAWRPLTSQGPATWEGASNPDEEEEEEEPCVICHENLSPENLSVLP 1164

Query: 97   CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 132
            C      H  H  C++ W+    T  C  C+   ++
Sbjct: 1165 C-----AHKFHAQCIRPWLMQQGT--CPTCRLHVLL 1193


>gi|150170725 zinc and ring finger 4 [Homo sapiens]
          Length = 429

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 78  DICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCK 127
           D+C IC  E ++   L I PC      H  H  C+  W   +  R C +CK
Sbjct: 307 DLCAICLDEYEEGDQLKILPCS-----HTYHCKCIDPWFSQAPRRSCPVCK 352


>gi|7657522 ring finger protein 7 isoform 1 [Homo sapiens]
          Length = 113

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 78  DICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 133
           D C  C  E   E  ++    C    H  H  C+  W+K ++   C LC+ +++++
Sbjct: 59  DACLRCQAENKQEDCVVVWGECN---HSFHNCCMSLWVKQNNR--CPLCQQDWVVQ 109


>gi|40807469 TRAF interacting protein [Homo sapiens]
          Length = 469

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 79  ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKP 138
           +C IC  +  D S  +   HC    H  H  CL QW +++ +R C  C+ +    T +  
Sbjct: 6   LCTICS-DFFDHSRDVAAIHCG---HTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIINK 61

Query: 139 L 139
           L
Sbjct: 62  L 62


>gi|21539663 praja 1 isoform c [Homo sapiens]
          Length = 455

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 14/108 (12%)

Query: 28  EKEREEQNEKTLGHFMSHSSNISKAGSPPSASA--PAPVSSFSRTSITPSSQDICRIC-- 83
           E+   +  E  L H  S + ++  A  P S  +    P    +        +  C IC  
Sbjct: 353 EERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCS 412

Query: 84  -HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 130
            + +G+  + L  PCH     H+ H+ C+  W++ S T  C +C+  F
Sbjct: 413 EYVKGEVATEL--PCH-----HYFHKPCVSIWLQKSGT--CPVCRCMF 451


>gi|74048537 praja 1 isoform b [Homo sapiens]
          Length = 588

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 14/108 (12%)

Query: 28  EKEREEQNEKTLGHFMSHSSNISKAGSPPSASA--PAPVSSFSRTSITPSSQDICRIC-- 83
           E+   +  E  L H  S + ++  A  P S  +    P    +        +  C IC  
Sbjct: 486 EERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCS 545

Query: 84  -HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 130
            + +G+  + L  PCH     H+ H+ C+  W++ S T  C +C+  F
Sbjct: 546 EYVKGEVATEL--PCH-----HYFHKPCVSIWLQKSGT--CPVCRCMF 584


>gi|41281725 praja 1 isoform a [Homo sapiens]
          Length = 643

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 14/108 (12%)

Query: 28  EKEREEQNEKTLGHFMSHSSNISKAGSPPSASA--PAPVSSFSRTSITPSSQDICRIC-- 83
           E+   +  E  L H  S + ++  A  P S  +    P    +        +  C IC  
Sbjct: 541 EERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCS 600

Query: 84  -HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 130
            + +G+  + L  PCH     H+ H+ C+  W++ S T  C +C+  F
Sbjct: 601 EYVKGEVATEL--PCH-----HYFHKPCVSIWLQKSGT--CPVCRCMF 639


>gi|13569903 ring finger protein 32 [Homo sapiens]
          Length = 362

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 55  PPSASAPAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQW 114
           PP  S+        R+ +   S   C IC  E +    ++  C      H  H+ACLQ +
Sbjct: 102 PPPLSSDEWEKVKQRSLLQGDSVQPCPICKEEFELRPQVLLSCS-----HVFHKACLQAF 156

Query: 115 IKSSDTRCCELCK 127
            K ++ + C LC+
Sbjct: 157 EKFTNKKTCPLCR 169


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.131    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,172,121
Number of Sequences: 37866
Number of extensions: 565777
Number of successful extensions: 2836
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 2744
Number of HSP's gapped (non-prelim): 136
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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