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Search of human proteins with 50409810
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50409810 APC11 anaphase promoting complex subunit 11 isoform
1 [Homo sapiens]
(196 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50409810 APC11 anaphase promoting complex subunit 11 isoform ... 425 e-119
gi|50409750 APC11 anaphase promoting complex subunit 11 isoform ... 98 5e-21
gi|50409789 APC11 anaphase promoting complex subunit 11 isoform ... 98 5e-21
gi|50409781 APC11 anaphase promoting complex subunit 11 isoform ... 98 5e-21
gi|50409804 APC11 anaphase promoting complex subunit 11 isoform ... 98 5e-21
gi|50409796 APC11 anaphase promoting complex subunit 11 isoform ... 98 5e-21
gi|18777675 APC11 anaphase promoting complex subunit 11 isoform ... 98 5e-21
gi|7657508 ring-box 1 [Homo sapiens] 38 0.006
gi|7657522 ring finger protein 7 isoform 1 [Homo sapiens] 36 0.024
gi|50345997 E1A binding protein p300 [Homo sapiens] 35 0.041
gi|169204510 PREDICTED: hypothetical protein [Homo sapiens] 34 0.070
gi|169205117 PREDICTED: hypothetical protein [Homo sapiens] 34 0.070
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens] 33 0.12
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens] 33 0.12
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens] 33 0.12
gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens] 33 0.12
gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens] 33 0.12
gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens] 33 0.12
gi|151101459 SAPS domain family, member 1 [Homo sapiens] 33 0.20
gi|34304333 ring finger protein 7 isoform 3 [Homo sapiens] 32 0.26
gi|239754458 PREDICTED: hypothetical protein [Homo sapiens] 32 0.45
gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo ... 32 0.45
gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo ... 32 0.45
gi|109150431 ring finger protein 31 [Homo sapiens] 32 0.45
gi|134031945 SCO-spondin [Homo sapiens] 32 0.45
gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens] 32 0.45
gi|140161500 ankyrin repeat and sterile alpha motif domain conta... 31 0.59
gi|32484977 angiomotin like 2 [Homo sapiens] 31 0.59
gi|169208488 PREDICTED: hypothetical protein [Homo sapiens] 31 0.77
>gi|50409810 APC11 anaphase promoting complex subunit 11 isoform 1
[Homo sapiens]
Length = 196
Score = 425 bits (1092), Expect = e-119
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG 60
MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG
Sbjct: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG 60
Query: 61 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD 120
RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD
Sbjct: 61 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD 120
Query: 121 LFGITDQVSADGPRACRQGARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGM 180
LFGITDQVSADGPRACRQGARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGM
Sbjct: 121 LFGITDQVSADGPRACRQGARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGM 180
Query: 181 EVQGVRPDLALAGGAS 196
EVQGVRPDLALAGGAS
Sbjct: 181 EVQGVRPDLALAGGAS 196
>gi|50409750 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 97.8 bits (242), Expect = 5e-21
Identities = 40/51 (78%), Positives = 42/51 (82%)
Query: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWC 51
MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDC + G+ G C
Sbjct: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQC 51
>gi|50409789 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 97.8 bits (242), Expect = 5e-21
Identities = 40/51 (78%), Positives = 42/51 (82%)
Query: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWC 51
MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDC + G+ G C
Sbjct: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQC 51
>gi|50409781 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 97.8 bits (242), Expect = 5e-21
Identities = 40/51 (78%), Positives = 42/51 (82%)
Query: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWC 51
MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDC + G+ G C
Sbjct: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQC 51
>gi|50409804 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 97.8 bits (242), Expect = 5e-21
Identities = 40/51 (78%), Positives = 42/51 (82%)
Query: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWC 51
MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDC + G+ G C
Sbjct: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQC 51
>gi|50409796 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 97.8 bits (242), Expect = 5e-21
Identities = 40/51 (78%), Positives = 42/51 (82%)
Query: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWC 51
MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDC + G+ G C
Sbjct: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQC 51
>gi|18777675 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 97.8 bits (242), Expect = 5e-21
Identities = 40/51 (78%), Positives = 42/51 (82%)
Query: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWC 51
MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDC + G+ G C
Sbjct: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQC 51
>gi|7657508 ring-box 1 [Homo sapiens]
Length = 108
Score = 37.7 bits (86), Expect = 0.006
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDC 37
+ ++K WN VA W W +NC ICR C +C
Sbjct: 21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIEC 56
>gi|7657522 ring finger protein 7 isoform 1 [Homo sapiens]
Length = 113
Score = 35.8 bits (81), Expect = 0.024
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 5 IKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGW 50
+K WN VA W W + C ICR+ C C + + W
Sbjct: 32 LKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVW 77
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 35.0 bits (79), Expect = 0.041
Identities = 41/157 (26%), Positives = 57/157 (36%), Gaps = 34/157 (21%)
Query: 51 CPQ-PVPVLGGRAHPQVPINTASPTPGQHTGSLMSREESSRS---PDPTPPALDQETSSL 106
CPQ P P L + VP T PTP S+ +++ + + P PTPPA+
Sbjct: 819 CPQLPQPALHQNSPSPVPSRT--PTPHHTPPSIGAQQPPATTIPAPVPTPPAMPP----- 871
Query: 107 LRCTSPWCLDHSCDLFGITDQVSADGPRACRQGARRRLPAGVGPVLPLLPHALHPQVAAR 166
G Q PR +LP V P LP P A PQ R
Sbjct: 872 ----------------GPQSQALHPPPRQTPTPPTTQLPQQVQPSLPAAPSADQPQQQPR 915
Query: 167 TAGAAA-------LPHVPPGMEVQGVRPDLALAGGAS 196
+ + A P +PP +P +++ G S
Sbjct: 916 SQQSTAASVPTPTAPLLPPQPATPLSQPAVSIEGQVS 952
>gi|169204510 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 34.3 bits (77), Expect = 0.070
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 123 GITDQVSADGPRACRQGARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPG 179
G + + A GP AC G RRLP GP P LP A A A +PPG
Sbjct: 196 GCSPRRGAAGPGACELGEGRRLPRAPGPSPPPLP-----------ASADAAGRLPPG 241
>gi|169205117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 34.3 bits (77), Expect = 0.070
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 123 GITDQVSADGPRACRQGARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPG 179
G + + A GP AC G RRLP GP P LP A A A +PPG
Sbjct: 196 GCSPRGGAAGPGACELGEGRRLPRAPGPSPPPLP-----------ASADAAGRLPPG 241
>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2852
Score = 33.5 bits (75), Expect = 0.12
Identities = 47/157 (29%), Positives = 63/157 (40%), Gaps = 28/157 (17%)
Query: 58 LGGRAHPQV-PINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSL-------LRC 109
+G A PQ P+ +A P P QHT ++ +R + P +L T L L
Sbjct: 1673 MGSPASPQPHPLPSAPPRPAQHT-TMATRSPALPPETPAAASLSTATDGLAATPFMSLES 1731
Query: 110 TSPWCL------DHSCDL--FGITDQVSADGPRAC-----RQGARRRLPA-GVGPVLPLL 155
T P L D S L G + V+ GP+A Q LPA + PVLP
Sbjct: 1732 TRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPLQPQATTLPAQTLSPVLPFT 1791
Query: 156 PHAL---HP--QVAARTAGAAALPHVPPGMEVQGVRP 187
P A+ HP +A AG A + + GV P
Sbjct: 1792 PAAMTQAHPPTHIAPPAAGTAPGLLLGATLPTSGVLP 1828
>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2924
Score = 33.5 bits (75), Expect = 0.12
Identities = 47/157 (29%), Positives = 63/157 (40%), Gaps = 28/157 (17%)
Query: 58 LGGRAHPQV-PINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSL-------LRC 109
+G A PQ P+ +A P P QHT ++ +R + P +L T L L
Sbjct: 1745 MGSPASPQPHPLPSAPPRPAQHT-TMATRSPALPPETPAAASLSTATDGLAATPFMSLES 1803
Query: 110 TSPWCL------DHSCDL--FGITDQVSADGPRAC-----RQGARRRLPA-GVGPVLPLL 155
T P L D S L G + V+ GP+A Q LPA + PVLP
Sbjct: 1804 TRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPLQPQATTLPAQTLSPVLPFT 1863
Query: 156 PHAL---HP--QVAARTAGAAALPHVPPGMEVQGVRP 187
P A+ HP +A AG A + + GV P
Sbjct: 1864 PAAMTQAHPPTHIAPPAAGTAPGLLLGATLPTSGVLP 1900
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/135 (27%), Positives = 52/135 (38%), Gaps = 17/135 (12%)
Query: 59 GGRAHPQVPINTASPTPGQHTGSLMSREESSRSPDP----TPPALDQETSSLLRCTSPW- 113
G R +VP+ +PG G+ +R R P P P + + ++ R P
Sbjct: 81 GSRRLGRVPLTFREASPGPAPGAPRARGSCGREPGPRRRRAPSSAGKRPAAAARAAPPRQ 140
Query: 114 -----CLDHSCDLFGITDQVSADGPRA-----CRQGARRRLPAGVGPVLPLLPHALHPQV 163
CL S + V PR CR RRR P+ P L A P++
Sbjct: 141 RSLARCLPRSVGSC-VRPSVGPSLPRRHCRRHCRCHCRRRPLPKPPPLQPRLGSASPPRL 199
Query: 164 AARTAGAAALPHVPP 178
AA AG+ A P + P
Sbjct: 200 AAPLAGSRA-PSLSP 213
>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 33.5 bits (75), Expect = 0.12
Identities = 47/157 (29%), Positives = 63/157 (40%), Gaps = 28/157 (17%)
Query: 58 LGGRAHPQV-PINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSL-------LRC 109
+G A PQ P+ +A P P QHT ++ +R + P +L T L L
Sbjct: 1673 MGSPASPQPHPLPSAPPRPAQHT-TMATRSPALPPETPAAASLSTATDGLAATPFMSLES 1731
Query: 110 TSPWCL------DHSCDL--FGITDQVSADGPRAC-----RQGARRRLPA-GVGPVLPLL 155
T P L D S L G + V+ GP+A Q LPA + PVLP
Sbjct: 1732 TRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPLQPQATTLPAQTLSPVLPFT 1791
Query: 156 PHAL---HP--QVAARTAGAAALPHVPPGMEVQGVRP 187
P A+ HP +A AG A + + GV P
Sbjct: 1792 PAAMTQAHPPTHIAPPAAGTAPGLLLGATLPTSGVLP 1828
>gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 33.5 bits (75), Expect = 0.12
Identities = 47/157 (29%), Positives = 63/157 (40%), Gaps = 28/157 (17%)
Query: 58 LGGRAHPQV-PINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSL-------LRC 109
+G A PQ P+ +A P P QHT ++ +R + P +L T L L
Sbjct: 1745 MGSPASPQPHPLPSAPPRPAQHT-TMATRSPALPPETPAAASLSTATDGLAATPFMSLES 1803
Query: 110 TSPWCL------DHSCDL--FGITDQVSADGPRAC-----RQGARRRLPA-GVGPVLPLL 155
T P L D S L G + V+ GP+A Q LPA + PVLP
Sbjct: 1804 TRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPLQPQATTLPAQTLSPVLPFT 1863
Query: 156 PHAL---HP--QVAARTAGAAALPHVPPGMEVQGVRP 187
P A+ HP +A AG A + + GV P
Sbjct: 1864 PAAMTQAHPPTHIAPPAAGTAPGLLLGATLPTSGVLP 1900
>gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 33.5 bits (75), Expect = 0.12
Identities = 47/157 (29%), Positives = 63/157 (40%), Gaps = 28/157 (17%)
Query: 58 LGGRAHPQV-PINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSL-------LRC 109
+G A PQ P+ +A P P QHT ++ +R + P +L T L L
Sbjct: 1673 MGSPASPQPHPLPSAPPRPAQHT-TMATRSPALPPETPAAASLSTATDGLAATPFMSLES 1731
Query: 110 TSPWCL------DHSCDL--FGITDQVSADGPRAC-----RQGARRRLPA-GVGPVLPLL 155
T P L D S L G + V+ GP+A Q LPA + PVLP
Sbjct: 1732 TRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPLQPQATTLPAQTLSPVLPFT 1791
Query: 156 PHAL---HP--QVAARTAGAAALPHVPPGMEVQGVRP 187
P A+ HP +A AG A + + GV P
Sbjct: 1792 PAAMTQAHPPTHIAPPAAGTAPGLLLGATLPTSGVLP 1828
>gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 33.5 bits (75), Expect = 0.12
Identities = 47/157 (29%), Positives = 63/157 (40%), Gaps = 28/157 (17%)
Query: 58 LGGRAHPQV-PINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSL-------LRC 109
+G A PQ P+ +A P P QHT ++ +R + P +L T L L
Sbjct: 1745 MGSPASPQPHPLPSAPPRPAQHT-TMATRSPALPPETPAAASLSTATDGLAATPFMSLES 1803
Query: 110 TSPWCL------DHSCDL--FGITDQVSADGPRAC-----RQGARRRLPA-GVGPVLPLL 155
T P L D S L G + V+ GP+A Q LPA + PVLP
Sbjct: 1804 TRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPLQPQATTLPAQTLSPVLPFT 1863
Query: 156 PHAL---HP--QVAARTAGAAALPHVPPGMEVQGVRP 187
P A+ HP +A AG A + + GV P
Sbjct: 1864 PAAMTQAHPPTHIAPPAAGTAPGLLLGATLPTSGVLP 1900
>gi|151101459 SAPS domain family, member 1 [Homo sapiens]
Length = 881
Score = 32.7 bits (73), Expect = 0.20
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 60 GRAHPQVPINTASPTPGQHTGSLMSREESS-RSPDPTPPALDQETSSLLRCTSP 112
G PQ P++ P Q S +R+ RS DPTPP+ QE + + T P
Sbjct: 738 GPPAPQGPLSVPQGLPTQSLASPPARDALQLRSQDPTPPSAPQEATEGSKVTEP 791
>gi|34304333 ring finger protein 7 isoform 3 [Homo sapiens]
Length = 90
Score = 32.3 bits (72), Expect = 0.26
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 5 IKCWNGVATWLWVANDENCGICRM 28
+K WN VA W W + C ICR+
Sbjct: 32 LKKWNAVAMWSWDVECDTCAICRV 55
>gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 31.6 bits (70), Expect = 0.45
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 54 PVPVLGGRAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALD 100
P P R P ++ +P+PG+ G SRE R D TPP +D
Sbjct: 105 PAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSRE--PRPQDGTPPPVD 149
>gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo
sapiens]
Length = 180
Score = 31.6 bits (70), Expect = 0.45
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 54 PVPVLGGRAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALD 100
P P R P ++ +P+PG+ G SRE R D TPP +D
Sbjct: 105 PAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSRE--PRPQDGTPPPVD 149
>gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo
sapiens]
Length = 180
Score = 31.6 bits (70), Expect = 0.45
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 54 PVPVLGGRAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALD 100
P P R P ++ +P+PG+ G SRE R D TPP +D
Sbjct: 105 PAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSRE--PRPQDGTPPPVD 149
>gi|109150431 ring finger protein 31 [Homo sapiens]
Length = 1072
Score = 31.6 bits (70), Expect = 0.45
Identities = 36/135 (26%), Positives = 49/135 (36%), Gaps = 18/135 (13%)
Query: 22 NCGICRMAFNGCCPDCP--LHGESISRCLGWCPQPVPVLGGRAHPQVPINTASPTPGQHT 79
+C C+ A CP C HG P + G P +P + A P P Q T
Sbjct: 228 HCPSCKQAL---CPACDHLFHGHPSRAHHLRQTLPGVLQGTHLSPSLPAS-AQPRP-QST 282
Query: 80 GSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCDLFGITDQVSADGPRACR-Q 138
L + S SP+P L ++ PW + C V+ D PR C+
Sbjct: 283 SLLALGDSSLSSPNPASAHLPWHCAACAMLNEPWAV--LC--------VACDRPRGCKGL 332
Query: 139 GARRRLPAGVGPVLP 153
G P G G + P
Sbjct: 333 GLGTEGPQGTGGLEP 347
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 31.6 bits (70), Expect = 0.45
Identities = 39/138 (28%), Positives = 43/138 (31%), Gaps = 31/138 (22%)
Query: 24 GICRMAFNGC-----CPDCPLHGESISRCLGWCPQPVPVLGGRAHPQVPINTASPTPGQH 78
G C A C CPD G G CP P +P AS PG
Sbjct: 1502 GTCLGAIQLCDGVWDCPDGADEGP------GHCPLP----------SLPTPPASTLPGPS 1545
Query: 79 TGSLMSREESSRSPDPTPPALDQETSSLLRCTS------PWCLDHSCDLFGITDQVSADG 132
GSL + S P PP E RC S W D D +D+ G
Sbjct: 1546 PGSLDTASSPLASASPAPPCGPFE----FRCGSGECTPRGWRCDQEEDCADGSDERGCGG 1601
Query: 133 PRACRQGARRRLPAGVGP 150
P A R P V P
Sbjct: 1602 PCAPHHAPCARGPHCVSP 1619
>gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens]
Length = 398
Score = 31.6 bits (70), Expect = 0.45
Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 12/114 (10%)
Query: 55 VPVLGGRAHPQ-VPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQ------ETSSLL 107
+P L AH + SP PG G+ + + S + T P + E L+
Sbjct: 72 LPGLSAAAHTMGLQWQPQSPRPGAGLGAASTVDPSESTGSSTAPPTKRHCRSLSEPEELV 131
Query: 108 RCTSPWCLDHSCDLFGITDQVSADGPRACRQGA-----RRRLPAGVGPVLPLLP 156
RC SPW S ++ + G A RQG+ R GP P P
Sbjct: 132 RCRSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPTSPATP 185
>gi|140161500 ankyrin repeat and sterile alpha motif domain
containing 1 [Homo sapiens]
Length = 1134
Score = 31.2 bits (69), Expect = 0.59
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 55 VPVLGGRAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPA-------LDQETSSLL 107
+P R+HP+ +TASP PG S S P P A L + S LL
Sbjct: 572 LPTTNSRSHPETLTHTASPHPGGAEEGDRSGARSRAPPTSKPKAELKLSRSLSKSDSDLL 631
Query: 108 RCT 110
C+
Sbjct: 632 TCS 634
>gi|32484977 angiomotin like 2 [Homo sapiens]
Length = 780
Score = 31.2 bits (69), Expect = 0.59
Identities = 18/51 (35%), Positives = 23/51 (45%)
Query: 61 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTS 111
RA + P+ TA P GS ++ PD T L E SLL C+S
Sbjct: 704 RAPTEEPVVTAPPAAHAKHGSRDGSTQTEGPPDSTSTCLPPEPDSLLGCSS 754
>gi|169208488 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 30.8 bits (68), Expect = 0.77
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 39 LHGESISRCLGWCPQPVPVLGGRAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPA 98
L + + R + P+P P G R P PT H+G+ +RE+ +RSP
Sbjct: 14 LRAQRLGREVPAAPKPAPRQGARETRPPP----PPTQASHSGAGQTREKGARSPRLGNRG 69
Query: 99 LDQETSSLLR 108
L + S L R
Sbjct: 70 LSRAGSPLSR 79
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,057,172
Number of Sequences: 37866
Number of extensions: 557882
Number of successful extensions: 2657
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 2583
Number of HSP's gapped (non-prelim): 178
length of query: 196
length of database: 18,247,518
effective HSP length: 97
effective length of query: 99
effective length of database: 14,574,516
effective search space: 1442877084
effective search space used: 1442877084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.