Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RNF7 Sequence: fasta or formatted (90aa) NCBI GI: 34304333
Description:

ring finger protein 7 isoform 3

Referenced in:

Cullins and SCF Complexes
Ring Finger Proteins

Other entries for this name:
alt prot [113aa] ring finger protein 7 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9          8           2
 C cysteine            6.7          6           1
 D aspartate           6.7          6           1
 E glutamate           5.6          5           2
 F phenylalanine       1.1          1           1
 G glycine             7.8          7           2
 H histidine           1.1          1           1
 I isoleucine          3.3          3           2
 K lysine              7.8          7           2
 L leucine             5.6          5           1
 M methionine          4.4          4           1
 N asparagine          3.3          3           1
 P proline             3.3          3           1
 Q glutamine           1.1          1           1
 R arginine            2.2          2           1
 S serine             11.1         10           2
 T threonine           6.7          6           2
 V valine              8.9          8           1
 W tryptophan          4.4          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 7 isoform 3 
RNF7                  0.589   ring finger protein 7 isoform 1 
RBX1                  0.190   ring-box 1 
ANAPC11               0.042   APC11 anaphase promoting complex subunit 11 isoform ...
ANAPC11               0.042   APC11 anaphase promoting complex subunit 11 isoform ...
ANAPC11               0.042   APC11 anaphase promoting complex subunit 11 isoform ...
ANAPC11               0.042   APC11 anaphase promoting complex subunit 11 isoform ...
ANAPC11               0.042   APC11 anaphase promoting complex subunit 11 isoform ...
ANAPC11               0.042   APC11 anaphase promoting complex subunit 11 isoform ...
ANAPC11               0.042   APC11 anaphase promoting complex subunit 11 isoform ...
OSMR                  0.012   oncostatin M receptor 
SMOX                  0.012   spermine oxidase isoform 1 
PIKFYVE               0.012   phosphatidylinositol-3-phosphate 5-kinase type III ...
DNAH17                0.006   PREDICTED: dynein, axonemal, heavy chain 17 
DNAH17                0.006   PREDICTED: dynein, axonemal, heavy chain 17 
DNAH17                0.006   PREDICTED: dynein, axonemal, heavy chain 17 
TMPRSS4               0.006   transmembrane protease, serine 4 isoform 3 
TMPRSS4               0.006   transmembrane protease, serine 4 isoform 1 
HLX                   0.000   H2.0-like homeobox 
GRM6                  0.000   glutamate receptor, metabotropic 6 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press