BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|50344744 beta-defensin 108B [Homo sapiens] (73 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|50344744 beta-defensin 108B [Homo sapiens] 158 1e-39 gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] 156 3e-39 gi|239753808 PREDICTED: hypothetical protein [Homo sapiens] 155 8e-39 gi|239748372 PREDICTED: hypothetical protein [Homo sapiens] 155 8e-39 gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo ... 115 1e-26 gi|103485139 defensin, beta 104A precursor [Homo sapiens] 47 3e-06 gi|103485137 defensin, beta 104B precursor [Homo sapiens] 47 3e-06 gi|83582794 beta-defensin 110 [Homo sapiens] 40 3e-04 gi|22748611 defensin, beta 106A precursor [Homo sapiens] 39 9e-04 gi|83582800 beta-defensin 116 [Homo sapiens] 39 9e-04 gi|103485143 defensin, beta 106B precursor [Homo sapiens] 39 9e-04 gi|82734214 beta-defensin 111 [Homo sapiens] 39 0.001 gi|16905373 beta-defensin 118 [Homo sapiens] 39 0.001 gi|46409558 beta-defensin 32 precursor [Homo sapiens] 35 0.010 gi|76563936 defensin, beta 125 preproprotein [Homo sapiens] 35 0.013 gi|58865339 defensin, beta 121 [Homo sapiens] 35 0.016 gi|82734223 beta-defensin 124 [Homo sapiens] 34 0.028 gi|23503331 defensin, beta 123 precursor [Homo sapiens] 34 0.028 gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo ... 32 0.14 gi|22748617 defensin, beta 105A precursor [Homo sapiens] 32 0.14 gi|103485141 defensin, beta 105B precursor [Homo sapiens] 32 0.14 gi|8923890 defensin, beta 103A precursor [Homo sapiens] 31 0.18 gi|103485147 defensin, beta 107B precursor [Homo sapiens] 31 0.18 gi|103485145 defensin, beta 107A precursor [Homo sapiens] 31 0.18 gi|125656159 beta-defensin 103B precursor [Homo sapiens] 31 0.18 gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens] 30 0.53 gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens] 30 0.53 gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo ... 30 0.53 gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens] 30 0.53 gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens] 30 0.53 >gi|50344744 beta-defensin 108B [Homo sapiens] Length = 73 Score = 158 bits (399), Expect = 1e-39 Identities = 73/73 (100%), Positives = 73/73 (100%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60 MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60 Query: 61 HQPRIESTTPKKD 73 HQPRIESTTPKKD Sbjct: 61 HQPRIESTTPKKD 73 >gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] Length = 73 Score = 156 bits (395), Expect = 3e-39 Identities = 72/73 (98%), Positives = 73/73 (100%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60 MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNS+PCCLPLG Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLG 60 Query: 61 HQPRIESTTPKKD 73 HQPRIESTTPKKD Sbjct: 61 HQPRIESTTPKKD 73 >gi|239753808 PREDICTED: hypothetical protein [Homo sapiens] Length = 83 Score = 155 bits (391), Expect = 8e-39 Identities = 71/73 (97%), Positives = 73/73 (100%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60 +RIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNS+PCCLPLG Sbjct: 11 VRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLG 70 Query: 61 HQPRIESTTPKKD 73 HQPRIESTTPKKD Sbjct: 71 HQPRIESTTPKKD 83 >gi|239748372 PREDICTED: hypothetical protein [Homo sapiens] Length = 83 Score = 155 bits (391), Expect = 8e-39 Identities = 71/73 (97%), Positives = 73/73 (100%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60 +RIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNS+PCCLPLG Sbjct: 11 VRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLG 70 Query: 61 HQPRIESTTPKKD 73 HQPRIESTTPKKD Sbjct: 71 HQPRIESTTPKKD 83 >gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo sapiens] Length = 111 Score = 115 bits (287), Expect = 1e-26 Identities = 50/53 (94%), Positives = 52/53 (98%) Query: 21 RGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLGHQPRIESTTPKKD 73 RGKFKEICERPNGSC+DFCLETEIHVGRCLNS+PCCLPLGHQPRIESTT KKD Sbjct: 59 RGKFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTHKKD 111 >gi|103485139 defensin, beta 104A precursor [Homo sapiens] Length = 72 Score = 47.0 bits (110), Expect = 3e-06 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLNSQPCCLP 58 M+ VLL AI + Q LP R +F+ IC CR C E +GRC N+ CCL Sbjct: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60 Query: 59 LGHQPRIESTTP 70 + + T P Sbjct: 61 KWDESLLNRTKP 72 >gi|103485137 defensin, beta 104B precursor [Homo sapiens] Length = 72 Score = 47.0 bits (110), Expect = 3e-06 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLNSQPCCLP 58 M+ VLL AI + Q LP R +F+ IC CR C E +GRC N+ CCL Sbjct: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60 Query: 59 LGHQPRIESTTP 70 + + T P Sbjct: 61 KWDESLLNRTKP 72 >gi|83582794 beta-defensin 110 [Homo sapiens] Length = 62 Score = 40.4 bits (93), Expect = 3e-04 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKFK-----EICERPNGSCRDFCLETEIHVGRCLN-SQP 54 M+I + F + F+++ +LPAR F+ E CE+ G C+ FC + E G C+ Sbjct: 1 MKIQLFFFILHFWVT-ILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQ 59 Query: 55 CCL 57 CC+ Sbjct: 60 CCV 62 >gi|22748611 defensin, beta 106A precursor [Homo sapiens] Length = 65 Score = 38.9 bits (89), Expect = 9e-04 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKF-KEICERPNGSCRDFCLETEIHVGRCLNSQPCC 56 MR + LFA+ FF++ PA+ F E C + G+C++ C + E + C S CC Sbjct: 1 MRTFLFLFAVLFFLT---PAKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCC 54 >gi|83582800 beta-defensin 116 [Homo sapiens] Length = 102 Score = 38.9 bits (89), Expect = 9e-04 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 9/68 (13%) Query: 1 MRIAVLLFAIFFFMSQVLPA------RGKFKEI---CERPNGSCRDFCLETEIHVGRCLN 51 M+ ++ AI ++Q P GK +E CE G CR+ C E EI C N Sbjct: 4 MKPCLMTIAILMILAQKTPGGLFRSHNGKSREPWNPCELYQGMCRNACREYEIQYLTCPN 63 Query: 52 SQPCCLPL 59 Q CCL L Sbjct: 64 DQKCCLKL 71 >gi|103485143 defensin, beta 106B precursor [Homo sapiens] Length = 65 Score = 38.9 bits (89), Expect = 9e-04 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKF-KEICERPNGSCRDFCLETEIHVGRCLNSQPCC 56 MR + LFA+ FF++ PA+ F E C + G+C++ C + E + C S CC Sbjct: 1 MRTFLFLFAVLFFLT---PAKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCC 54 >gi|82734214 beta-defensin 111 [Homo sapiens] Length = 67 Score = 38.5 bits (88), Expect = 0.001 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 10/66 (15%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKFKEI--------CERPNGSCRDFCLETEIHVGRCLN- 51 M+I + F + F+++ +LPA+ K+ E C NG C++ C E EI + C+ Sbjct: 1 MKIQLFFFILHFWVT-ILPAKKKYPEYGSLDLRRECRIGNGQCKNQCHENEIRIAYCIRP 59 Query: 52 SQPCCL 57 CCL Sbjct: 60 GTHCCL 65 >gi|16905373 beta-defensin 118 [Homo sapiens] Length = 123 Score = 38.5 bits (88), Expect = 0.001 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60 M++ +L + + QV+PA K+ C +G CR C + E C N + CC+P Sbjct: 1 MKLLLLALPMLVLLPQVIPAYSGEKK-CWNRSGHCRKQCKDGEAVKDTCKNLRACCIPSN 59 Query: 61 H-QPRIESTTP 70 R+ +T+P Sbjct: 60 EDHRRVPATSP 70 >gi|46409558 beta-defensin 32 precursor [Homo sapiens] Length = 95 Score = 35.4 bits (80), Expect = 0.010 Identities = 18/64 (28%), Positives = 29/64 (45%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60 M+ +L+ A F++QV+PA + G CR C E + C S+ CC+ Sbjct: 1 MKFLLLVLAALGFLTQVIPASAGGSKCVSNTPGYCRTCCHWGETALFMCNASRKCCISYS 60 Query: 61 HQPR 64 P+ Sbjct: 61 FLPK 64 >gi|76563936 defensin, beta 125 preproprotein [Homo sapiens] Length = 156 Score = 35.0 bits (79), Expect = 0.013 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKFK-EICERPN-GSCRDFCLETEIHVGRCLNSQPCCLP 58 M I +L F I +++V +G F+ + C + N G CR CL+TE ++ C N CC+ Sbjct: 1 MNILMLTFIICGLLTRV--TKGSFEPQKCWKNNVGHCRRRCLDTERYILLCRNKLSCCIS 58 Query: 59 L 59 + Sbjct: 59 I 59 >gi|58865339 defensin, beta 121 [Homo sapiens] Length = 76 Score = 34.7 bits (78), Expect = 0.016 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60 M++ +LL + ++QV P C +G CR C E+E++ C CC+ Sbjct: 1 MKLLLLLLTVTLLLAQVTPVMK-----CWGKSGRCRTTCKESEVYYILCKTEAKCCVDPK 55 Query: 61 HQP 63 + P Sbjct: 56 YVP 58 >gi|82734223 beta-defensin 124 [Homo sapiens] Length = 71 Score = 33.9 bits (76), Expect = 0.028 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Query: 5 VLLFAIFFFMSQVLPA-RGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLGHQP 63 +LLF + + +P+ R +FK C + G+C+ +C E ++ C ++ CCL +P Sbjct: 4 LLLFLVALLVLGHVPSGRSEFKR-CWKGQGACQTYCTRQETYMHLCPDASLCCLSYALKP 62 >gi|23503331 defensin, beta 123 precursor [Homo sapiens] Length = 67 Score = 33.9 bits (76), Expect = 0.028 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60 M++ +L + +SQ+ P + C G CR C + E C+N++ CC+ Sbjct: 1 MKLLLLTLTVLLLLSQLTPGG---TQRCWNLYGKCRYRCSKKERVYVYCINNKMCCVKPK 57 Query: 61 HQPR 64 +QP+ Sbjct: 58 YQPK 61 >gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo sapiens] Length = 192 Score = 31.6 bits (70), Expect = 0.14 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKFKEI---CERPNGSCR-DFCLETEIHVGRCLNSQPCC 56 +R+ VLL + F + P RG C +G CR D C E +G C CC Sbjct: 64 VRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123 >gi|22748617 defensin, beta 105A precursor [Homo sapiens] Length = 78 Score = 31.6 bits (70), Expect = 0.14 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 16/65 (24%) Query: 7 LFAIFFFM-------------SQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLN 51 LFA+FF + SQ P+ G+F E C+ G CR CLE E G C Sbjct: 11 LFAMFFILVQLPSGCQAGLDFSQPFPS-GEFAVCESCKLGRGKCRKECLENEKPDGNCRL 69 Query: 52 SQPCC 56 + CC Sbjct: 70 NFLCC 74 >gi|103485141 defensin, beta 105B precursor [Homo sapiens] Length = 78 Score = 31.6 bits (70), Expect = 0.14 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 16/65 (24%) Query: 7 LFAIFFFM-------------SQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLN 51 LFA+FF + SQ P+ G+F E C+ G CR CLE E G C Sbjct: 11 LFAMFFILVQLPSGCQAGLDFSQPFPS-GEFAVCESCKLGRGKCRKECLENEKPDGNCRL 69 Query: 52 SQPCC 56 + CC Sbjct: 70 NFLCC 74 >gi|8923890 defensin, beta 103A precursor [Homo sapiens] Length = 67 Score = 31.2 bits (69), Expect = 0.18 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 7/63 (11%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKF-----KEICERPNGSCRDF-CLETEIHVGRC-LNSQ 53 MRI LLFA+ F +P G K C G C CL E +G+C + Sbjct: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60 Query: 54 PCC 56 CC Sbjct: 61 KCC 63 >gi|103485147 defensin, beta 107B precursor [Homo sapiens] Length = 70 Score = 31.2 bits (69), Expect = 0.18 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKFKE--ICERPNGSCRDFCLETEIHVGRC 49 M+I V + A ++Q+ AR I +R G C CL E+ +G C Sbjct: 5 MKIFVFILAALILLAQIFQARTAIHRALISKRMEGHCEAECLTFEVKIGGC 55 >gi|103485145 defensin, beta 107A precursor [Homo sapiens] Length = 70 Score = 31.2 bits (69), Expect = 0.18 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKFKE--ICERPNGSCRDFCLETEIHVGRC 49 M+I V + A ++Q+ AR I +R G C CL E+ +G C Sbjct: 5 MKIFVFILAALILLAQIFQARTAIHRALISKRMEGHCEAECLTFEVKIGGC 55 >gi|125656159 beta-defensin 103B precursor [Homo sapiens] Length = 67 Score = 31.2 bits (69), Expect = 0.18 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 7/63 (11%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKF-----KEICERPNGSCRDF-CLETEIHVGRC-LNSQ 53 MRI LLFA+ F +P G K C G C CL E +G+C + Sbjct: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60 Query: 54 PCC 56 CC Sbjct: 61 KCC 63 >gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens] Length = 61 Score = 29.6 bits (65), Expect = 0.53 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 1 MRIAVLLFAIFFFMSQV---LPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCC 56 M+I V LF +FFF+ + + K C G CR C + E +G C C Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANC 59 >gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens] Length = 61 Score = 29.6 bits (65), Expect = 0.53 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 1 MRIAVLLFAIFFFMSQV---LPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCC 56 M+I V LF +FFF+ + + K C G CR C + E +G C C Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANC 59 >gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo sapiens] Length = 87 Score = 29.6 bits (65), Expect = 0.53 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 4/60 (6%) Query: 1 MRIAVLLFAIFFFMSQVLPARGKFKEI---CERPNGSCR-DFCLETEIHVGRCLNSQPCC 56 MR+ +LL + F + P RG C G CR D C E +G C CC Sbjct: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60 >gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens] Length = 61 Score = 29.6 bits (65), Expect = 0.53 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 1 MRIAVLLFAIFFFMSQV---LPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCC 56 M+I V LF +FFF+ + + K C G CR C + E +G C C Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANC 59 >gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens] Length = 88 Score = 29.6 bits (65), Expect = 0.53 Identities = 11/27 (40%), Positives = 16/27 (59%) Query: 32 NGSCRDFCLETEIHVGRCLNSQPCCLP 58 +G CR C + E + RC N + CC+P Sbjct: 26 DGHCRLLCKDGEDSIIRCRNRKRCCVP 52 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.330 0.144 0.475 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,152,934 Number of Sequences: 37866 Number of extensions: 127665 Number of successful extensions: 400 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 358 Number of HSP's gapped (non-prelim): 53 length of query: 73 length of database: 18,247,518 effective HSP length: 46 effective length of query: 27 effective length of database: 16,505,682 effective search space: 445653414 effective search space used: 445653414 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.