Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 50344744

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|50344744 beta-defensin 108B [Homo sapiens]
         (73 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|50344744 beta-defensin 108B [Homo sapiens]                         158   1e-39
gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]           156   3e-39
gi|239753808 PREDICTED: hypothetical protein [Homo sapiens]           155   8e-39
gi|239748372 PREDICTED: hypothetical protein [Homo sapiens]           155   8e-39
gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo ...   115   1e-26
gi|103485139 defensin, beta 104A precursor [Homo sapiens]              47   3e-06
gi|103485137 defensin, beta 104B precursor [Homo sapiens]              47   3e-06
gi|83582794 beta-defensin 110 [Homo sapiens]                           40   3e-04
gi|22748611 defensin, beta 106A precursor [Homo sapiens]               39   9e-04
gi|83582800 beta-defensin 116 [Homo sapiens]                           39   9e-04
gi|103485143 defensin, beta 106B precursor [Homo sapiens]              39   9e-04
gi|82734214 beta-defensin 111 [Homo sapiens]                           39   0.001
gi|16905373 beta-defensin 118 [Homo sapiens]                           39   0.001
gi|46409558 beta-defensin 32 precursor [Homo sapiens]                  35   0.010
gi|76563936 defensin, beta 125 preproprotein [Homo sapiens]            35   0.013
gi|58865339 defensin, beta 121 [Homo sapiens]                          35   0.016
gi|82734223 beta-defensin 124 [Homo sapiens]                           34   0.028
gi|23503331 defensin, beta 123 precursor [Homo sapiens]                34   0.028
gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo ...    32   0.14 
gi|22748617 defensin, beta 105A precursor [Homo sapiens]               32   0.14 
gi|103485141 defensin, beta 105B precursor [Homo sapiens]              32   0.14 
gi|8923890 defensin, beta 103A precursor [Homo sapiens]                31   0.18 
gi|103485147 defensin, beta 107B precursor [Homo sapiens]              31   0.18 
gi|103485145 defensin, beta 107A precursor [Homo sapiens]              31   0.18 
gi|125656159 beta-defensin 103B precursor [Homo sapiens]               31   0.18 
gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens]              30   0.53 
gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens]              30   0.53 
gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo ...    30   0.53 
gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens]               30   0.53 
gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens]      30   0.53 

>gi|50344744 beta-defensin 108B [Homo sapiens]
          Length = 73

 Score =  158 bits (399), Expect = 1e-39
 Identities = 73/73 (100%), Positives = 73/73 (100%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60
          MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG
Sbjct: 1  MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60

Query: 61 HQPRIESTTPKKD 73
          HQPRIESTTPKKD
Sbjct: 61 HQPRIESTTPKKD 73


>gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 73

 Score =  156 bits (395), Expect = 3e-39
 Identities = 72/73 (98%), Positives = 73/73 (100%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60
          MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNS+PCCLPLG
Sbjct: 1  MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLG 60

Query: 61 HQPRIESTTPKKD 73
          HQPRIESTTPKKD
Sbjct: 61 HQPRIESTTPKKD 73


>gi|239753808 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 83

 Score =  155 bits (391), Expect = 8e-39
 Identities = 71/73 (97%), Positives = 73/73 (100%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60
          +RIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNS+PCCLPLG
Sbjct: 11 VRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLG 70

Query: 61 HQPRIESTTPKKD 73
          HQPRIESTTPKKD
Sbjct: 71 HQPRIESTTPKKD 83


>gi|239748372 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 83

 Score =  155 bits (391), Expect = 8e-39
 Identities = 71/73 (97%), Positives = 73/73 (100%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60
          +RIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNS+PCCLPLG
Sbjct: 11 VRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLG 70

Query: 61 HQPRIESTTPKKD 73
          HQPRIESTTPKKD
Sbjct: 71 HQPRIESTTPKKD 83


>gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo
           sapiens]
          Length = 111

 Score =  115 bits (287), Expect = 1e-26
 Identities = 50/53 (94%), Positives = 52/53 (98%)

Query: 21  RGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLGHQPRIESTTPKKD 73
           RGKFKEICERPNGSC+DFCLETEIHVGRCLNS+PCCLPLGHQPRIESTT KKD
Sbjct: 59  RGKFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTHKKD 111


>gi|103485139 defensin, beta 104A precursor [Homo sapiens]
          Length = 72

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLNSQPCCLP 58
          M+  VLL AI   + Q LP R +F+   IC      CR  C   E  +GRC N+  CCL 
Sbjct: 1  MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60

Query: 59 LGHQPRIESTTP 70
             +  +  T P
Sbjct: 61 KWDESLLNRTKP 72


>gi|103485137 defensin, beta 104B precursor [Homo sapiens]
          Length = 72

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLNSQPCCLP 58
          M+  VLL AI   + Q LP R +F+   IC      CR  C   E  +GRC N+  CCL 
Sbjct: 1  MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60

Query: 59 LGHQPRIESTTP 70
             +  +  T P
Sbjct: 61 KWDESLLNRTKP 72


>gi|83582794 beta-defensin 110 [Homo sapiens]
          Length = 62

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKFK-----EICERPNGSCRDFCLETEIHVGRCLN-SQP 54
          M+I +  F + F+++ +LPAR  F+     E CE+  G C+ FC + E   G C+     
Sbjct: 1  MKIQLFFFILHFWVT-ILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQ 59

Query: 55 CCL 57
          CC+
Sbjct: 60 CCV 62


>gi|22748611 defensin, beta 106A precursor [Homo sapiens]
          Length = 65

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKF-KEICERPNGSCRDFCLETEIHVGRCLNSQPCC 56
          MR  + LFA+ FF++   PA+  F  E C +  G+C++ C + E  +  C  S  CC
Sbjct: 1  MRTFLFLFAVLFFLT---PAKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCC 54


>gi|83582800 beta-defensin 116 [Homo sapiens]
          Length = 102

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 9/68 (13%)

Query: 1  MRIAVLLFAIFFFMSQVLPA------RGKFKEI---CERPNGSCRDFCLETEIHVGRCLN 51
          M+  ++  AI   ++Q  P        GK +E    CE   G CR+ C E EI    C N
Sbjct: 4  MKPCLMTIAILMILAQKTPGGLFRSHNGKSREPWNPCELYQGMCRNACREYEIQYLTCPN 63

Query: 52 SQPCCLPL 59
           Q CCL L
Sbjct: 64 DQKCCLKL 71


>gi|103485143 defensin, beta 106B precursor [Homo sapiens]
          Length = 65

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKF-KEICERPNGSCRDFCLETEIHVGRCLNSQPCC 56
          MR  + LFA+ FF++   PA+  F  E C +  G+C++ C + E  +  C  S  CC
Sbjct: 1  MRTFLFLFAVLFFLT---PAKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCC 54


>gi|82734214 beta-defensin 111 [Homo sapiens]
          Length = 67

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 10/66 (15%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKFKEI--------CERPNGSCRDFCLETEIHVGRCLN- 51
          M+I +  F + F+++ +LPA+ K+ E         C   NG C++ C E EI +  C+  
Sbjct: 1  MKIQLFFFILHFWVT-ILPAKKKYPEYGSLDLRRECRIGNGQCKNQCHENEIRIAYCIRP 59

Query: 52 SQPCCL 57
             CCL
Sbjct: 60 GTHCCL 65


>gi|16905373 beta-defensin 118 [Homo sapiens]
          Length = 123

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60
          M++ +L   +   + QV+PA    K+ C   +G CR  C + E     C N + CC+P  
Sbjct: 1  MKLLLLALPMLVLLPQVIPAYSGEKK-CWNRSGHCRKQCKDGEAVKDTCKNLRACCIPSN 59

Query: 61 H-QPRIESTTP 70
              R+ +T+P
Sbjct: 60 EDHRRVPATSP 70


>gi|46409558 beta-defensin 32 precursor [Homo sapiens]
          Length = 95

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 18/64 (28%), Positives = 29/64 (45%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60
          M+  +L+ A   F++QV+PA     +      G CR  C   E  +  C  S+ CC+   
Sbjct: 1  MKFLLLVLAALGFLTQVIPASAGGSKCVSNTPGYCRTCCHWGETALFMCNASRKCCISYS 60

Query: 61 HQPR 64
            P+
Sbjct: 61 FLPK 64


>gi|76563936 defensin, beta 125 preproprotein [Homo sapiens]
          Length = 156

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKFK-EICERPN-GSCRDFCLETEIHVGRCLNSQPCCLP 58
          M I +L F I   +++V   +G F+ + C + N G CR  CL+TE ++  C N   CC+ 
Sbjct: 1  MNILMLTFIICGLLTRV--TKGSFEPQKCWKNNVGHCRRRCLDTERYILLCRNKLSCCIS 58

Query: 59 L 59
          +
Sbjct: 59 I 59


>gi|58865339 defensin, beta 121 [Homo sapiens]
          Length = 76

 Score = 34.7 bits (78), Expect = 0.016
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60
          M++ +LL  +   ++QV P        C   +G CR  C E+E++   C     CC+   
Sbjct: 1  MKLLLLLLTVTLLLAQVTPVMK-----CWGKSGRCRTTCKESEVYYILCKTEAKCCVDPK 55

Query: 61 HQP 63
          + P
Sbjct: 56 YVP 58


>gi|82734223 beta-defensin 124 [Homo sapiens]
          Length = 71

 Score = 33.9 bits (76), Expect = 0.028
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 5  VLLFAIFFFMSQVLPA-RGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLGHQP 63
          +LLF +   +   +P+ R +FK  C +  G+C+ +C   E ++  C ++  CCL    +P
Sbjct: 4  LLLFLVALLVLGHVPSGRSEFKR-CWKGQGACQTYCTRQETYMHLCPDASLCCLSYALKP 62


>gi|23503331 defensin, beta 123 precursor [Homo sapiens]
          Length = 67

 Score = 33.9 bits (76), Expect = 0.028
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60
          M++ +L   +   +SQ+ P      + C    G CR  C + E     C+N++ CC+   
Sbjct: 1  MKLLLLTLTVLLLLSQLTPGG---TQRCWNLYGKCRYRCSKKERVYVYCINNKMCCVKPK 57

Query: 61 HQPR 64
          +QP+
Sbjct: 58 YQPK 61


>gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo
           sapiens]
          Length = 192

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 1   MRIAVLLFAIFFFMSQVLPARGKFKEI---CERPNGSCR-DFCLETEIHVGRCLNSQPCC 56
           +R+ VLL  +  F   + P RG        C   +G CR D C   E  +G C     CC
Sbjct: 64  VRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123


>gi|22748617 defensin, beta 105A precursor [Homo sapiens]
          Length = 78

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 16/65 (24%)

Query: 7  LFAIFFFM-------------SQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLN 51
          LFA+FF +             SQ  P+ G+F   E C+   G CR  CLE E   G C  
Sbjct: 11 LFAMFFILVQLPSGCQAGLDFSQPFPS-GEFAVCESCKLGRGKCRKECLENEKPDGNCRL 69

Query: 52 SQPCC 56
          +  CC
Sbjct: 70 NFLCC 74


>gi|103485141 defensin, beta 105B precursor [Homo sapiens]
          Length = 78

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 16/65 (24%)

Query: 7  LFAIFFFM-------------SQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLN 51
          LFA+FF +             SQ  P+ G+F   E C+   G CR  CLE E   G C  
Sbjct: 11 LFAMFFILVQLPSGCQAGLDFSQPFPS-GEFAVCESCKLGRGKCRKECLENEKPDGNCRL 69

Query: 52 SQPCC 56
          +  CC
Sbjct: 70 NFLCC 74


>gi|8923890 defensin, beta 103A precursor [Homo sapiens]
          Length = 67

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKF-----KEICERPNGSCRDF-CLETEIHVGRC-LNSQ 53
          MRI  LLFA+ F     +P  G       K  C    G C    CL  E  +G+C    +
Sbjct: 1  MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60

Query: 54 PCC 56
           CC
Sbjct: 61 KCC 63


>gi|103485147 defensin, beta 107B precursor [Homo sapiens]
          Length = 70

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKFKE--ICERPNGSCRDFCLETEIHVGRC 49
          M+I V + A    ++Q+  AR       I +R  G C   CL  E+ +G C
Sbjct: 5  MKIFVFILAALILLAQIFQARTAIHRALISKRMEGHCEAECLTFEVKIGGC 55


>gi|103485145 defensin, beta 107A precursor [Homo sapiens]
          Length = 70

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKFKE--ICERPNGSCRDFCLETEIHVGRC 49
          M+I V + A    ++Q+  AR       I +R  G C   CL  E+ +G C
Sbjct: 5  MKIFVFILAALILLAQIFQARTAIHRALISKRMEGHCEAECLTFEVKIGGC 55


>gi|125656159 beta-defensin 103B precursor [Homo sapiens]
          Length = 67

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKF-----KEICERPNGSCRDF-CLETEIHVGRC-LNSQ 53
          MRI  LLFA+ F     +P  G       K  C    G C    CL  E  +G+C    +
Sbjct: 1  MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60

Query: 54 PCC 56
           CC
Sbjct: 61 KCC 63


>gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens]
          Length = 61

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 1  MRIAVLLFAIFFFMSQV---LPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCC 56
          M+I V LF +FFF+  +   +    K    C    G CR  C + E  +G C      C
Sbjct: 1  MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANC 59


>gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens]
          Length = 61

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 1  MRIAVLLFAIFFFMSQV---LPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCC 56
          M+I V LF +FFF+  +   +    K    C    G CR  C + E  +G C      C
Sbjct: 1  MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANC 59


>gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo
          sapiens]
          Length = 87

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 1  MRIAVLLFAIFFFMSQVLPARGKFKEI---CERPNGSCR-DFCLETEIHVGRCLNSQPCC 56
          MR+ +LL  +  F   + P RG        C    G CR D C   E  +G C     CC
Sbjct: 1  MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60


>gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens]
          Length = 61

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 1  MRIAVLLFAIFFFMSQV---LPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCC 56
          M+I V LF +FFF+  +   +    K    C    G CR  C + E  +G C      C
Sbjct: 1  MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANC 59


>gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens]
          Length = 88

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 32 NGSCRDFCLETEIHVGRCLNSQPCCLP 58
          +G CR  C + E  + RC N + CC+P
Sbjct: 26 DGHCRLLCKDGEDSIIRCRNRKRCCVP 52


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.330    0.144    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,152,934
Number of Sequences: 37866
Number of extensions: 127665
Number of successful extensions: 400
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 53
length of query: 73
length of database: 18,247,518
effective HSP length: 46
effective length of query: 27
effective length of database: 16,505,682
effective search space: 445653414
effective search space used: 445653414
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press