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Search of human proteins with 5032153
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5032153 TAF12 RNA polymerase II, TATA box binding protein
(TBP)-associated factor, 20 kD [Homo sapiens]
(161 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|206725450 TAF12 RNA polymerase II, TATA box binding protein (... 323 3e-89
gi|5032153 TAF12 RNA polymerase II, TATA box binding protein (TB... 323 3e-89
gi|4503381 down-regulator of transcription 1 [Homo sapiens] 37 0.007
gi|28173554 histone cluster 3, H2bb [Homo sapiens] 34 0.062
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 33 0.14
gi|122937239 zinc finger CCCH-type domain containing 5 [Homo sap... 32 0.18
gi|58761530 polycomb group ring finger 6 isoform a [Homo sapiens] 32 0.24
gi|37655165 polycomb group ring finger 6 isoform b [Homo sapiens] 32 0.24
gi|190014603 TBC1 domain family, member 13 [Homo sapiens] 32 0.31
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 30 0.69
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 30 0.69
gi|157743245 WD repeat domain 43 [Homo sapiens] 30 0.69
gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Ho... 30 0.90
gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Ho... 30 0.90
gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Hom... 30 0.90
gi|17017980 kelch-like 4 isoform 2 [Homo sapiens] 30 0.90
gi|17017982 kelch-like 4 isoform 1 [Homo sapiens] 30 0.90
gi|117414152 transcription factor 19 [Homo sapiens] 30 1.2
gi|117414156 transcription factor 19 [Homo sapiens] 30 1.2
gi|55770834 centromere protein F [Homo sapiens] 30 1.2
gi|169217174 PREDICTED: H2B histone family, member M [Homo sapiens] 29 1.5
gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens] 29 1.5
gi|169216635 PREDICTED: H2B histone family, member M [Homo sapiens] 29 1.5
gi|31657117 SMEK homolog 1, suppressor of mek1 [Homo sapiens] 29 1.5
gi|21687252 zinc finger protein 296 [Homo sapiens] 29 2.0
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap... 28 2.6
gi|23065529 growth arrest-specific 2 like 1 isoform b [Homo sapi... 28 2.6
gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo sapi... 28 2.6
gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo sapi... 28 2.6
gi|109240550 paraspeckle protein 1 [Homo sapiens] 28 2.6
>gi|206725450 TAF12 RNA polymerase II, TATA box binding protein
(TBP)-associated factor, 20 kD [Homo sapiens]
Length = 161
Score = 323 bits (829), Expect = 3e-89
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTK 60
MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTK
Sbjct: 1 MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTK 60
Query: 61 KKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL 120
KKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL
Sbjct: 61 KKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL 120
Query: 121 ERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK 161
ERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK
Sbjct: 121 ERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK 161
>gi|5032153 TAF12 RNA polymerase II, TATA box binding protein
(TBP)-associated factor, 20 kD [Homo sapiens]
Length = 161
Score = 323 bits (829), Expect = 3e-89
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTK 60
MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTK
Sbjct: 1 MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTK 60
Query: 61 KKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL 120
KKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL
Sbjct: 61 KKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL 120
Query: 121 ERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK 161
ERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK
Sbjct: 121 ERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK 161
>gi|4503381 down-regulator of transcription 1 [Homo sapiens]
Length = 176
Score = 37.0 bits (84), Expect = 0.007
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 53 ENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLE 112
+++ + + + +++E PN ++ D E+++ +FI + + A ++ + T+
Sbjct: 8 DDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTIS 67
Query: 113 VKDVQLHLERQWNMWIPGFGS--EEIRPYKKACTTEAHKQRMALIR 156
+ V LE GFGS E++ + C T A K+R A R
Sbjct: 68 PEHVIQALESL------GFGSYISEVKEVLQECKTVALKRRKASSR 107
>gi|28173554 histone cluster 3, H2bb [Homo sapiens]
Length = 126
Score = 33.9 bits (76), Expect = 0.062
Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 20 PEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQLDED 79
P+P+ + P + AV K G + + + + K+ +++V P+ +
Sbjct: 2 PDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKV---LKQVHPDTGISSK 58
Query: 80 VEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQ 117
++ +D E + + A +LA + K ST+ ++VQ
Sbjct: 59 AMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQ 96
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 32.7 bits (73), Expect = 0.14
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 16 SSIKPEPASTPPQG-SMANSTAVVKIPGTPGAGGRLSPENN 55
S +K EP T P G + T V +PG PG G + P+ +
Sbjct: 2203 SGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGS 2243
>gi|122937239 zinc finger CCCH-type domain containing 5 [Homo
sapiens]
Length = 886
Score = 32.3 bits (72), Expect = 0.18
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 1 MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGA 46
+N+FG +AL + S++ P P S GS+ S+A V IPG+ G+
Sbjct: 600 LNEFGVAALEKTFDNSTV-PHPGSITIGGSLLQSSAPVNIPGSLGS 644
>gi|58761530 polycomb group ring finger 6 isoform a [Homo sapiens]
Length = 350
Score = 32.0 bits (71), Expect = 0.24
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 22 PASTPPQGSMANSTAVVKIPGTPGAGG----RLSPENNQVLTKKKLQDLVREVDPNEQLD 77
PA TP + A + G PG G L PE + + + +D E++ E+L+
Sbjct: 32 PALTPAPAAGEEGPAPLSETGAPGCSGSRPPELEPERSLGRFRGRFEDEDEELEEEEELE 91
Query: 78 EDVEE 82
E+ EE
Sbjct: 92 EEEEE 96
>gi|37655165 polycomb group ring finger 6 isoform b [Homo sapiens]
Length = 275
Score = 32.0 bits (71), Expect = 0.24
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 22 PASTPPQGSMANSTAVVKIPGTPGAGG----RLSPENNQVLTKKKLQDLVREVDPNEQLD 77
PA TP + A + G PG G L PE + + + +D E++ E+L+
Sbjct: 32 PALTPAPAAGEEGPAPLSETGAPGCSGSRPPELEPERSLGRFRGRFEDEDEELEEEEELE 91
Query: 78 EDVEE 82
E+ EE
Sbjct: 92 EEEEE 96
>gi|190014603 TBC1 domain family, member 13 [Homo sapiens]
Length = 400
Score = 31.6 bits (70), Expect = 0.31
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 71 DPNEQLDEDVE--------EMLLQIADDFIESVVTAACQLARHRKS--STLEVKDVQLHL 120
DPN + E E ++ +I D+FI+S+ + C + + STL+ KDV+L+L
Sbjct: 245 DPNSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYL 304
Query: 121 ERQ 123
+ Q
Sbjct: 305 KLQ 307
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 30.4 bits (67), Expect = 0.69
Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 50 LSPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSS 109
L E Q+ +++L L R+ + + VE+ LLQ + ++ + CQ + R
Sbjct: 1962 LEAEQQQIQEEREL--LSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDL 2019
Query: 110 TLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTK 160
+VK +++ +E Q + +I E+ K + +Q AL ++ K
Sbjct: 2020 QKQVKALEIDVEEQVSRFI------ELEQEKNTELMDLRQQNQALEKQLEK 2064
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 30.4 bits (67), Expect = 0.69
Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 50 LSPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSS 109
L E Q+ +++L L R+ + + VE+ LLQ + ++ + CQ + R
Sbjct: 1962 LEAEQQQIQEEREL--LSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDL 2019
Query: 110 TLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTK 160
+VK +++ +E Q + +I E+ K + +Q AL ++ K
Sbjct: 2020 QKQVKALEIDVEEQVSRFI------ELEQEKNTELMDLRQQNQALEKQLEK 2064
>gi|157743245 WD repeat domain 43 [Homo sapiens]
Length = 677
Score = 30.4 bits (67), Expect = 0.69
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 11 NLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLS---PENNQVLTKKK 62
++SN + K E A T + + NS A V +PG PG + P+ QV +K+K
Sbjct: 376 DISNCWAPKVETAITKVRTPVMNSEAKVLVPGIPGHHAAIKPAPPQTEQVESKRK 430
>gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Homo
sapiens]
Length = 531
Score = 30.0 bits (66), Expect = 0.90
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 22 PASTPPQGSMANSTAVVKIPGTPGAG------GRLSPENNQVLTKKKLQDLVREVDPNEQ 75
P + P + A + + IPG GAG L+PE + L + +V +
Sbjct: 310 PLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI 369
Query: 76 LDEDVEEMLLQIADDFIESVVTAACQLA-RHRKSSTLEVKDVQLHLERQWNMWIPGFGSE 134
L E L+Q+AD QLA H L K +++ L + N+ +P G E
Sbjct: 370 LFNKKENALVQMADG-------NQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQE 422
Query: 135 E 135
+
Sbjct: 423 D 423
>gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Homo
sapiens]
Length = 550
Score = 30.0 bits (66), Expect = 0.90
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 22 PASTPPQGSMANSTAVVKIPGTPGAG------GRLSPENNQVLTKKKLQDLVREVDPNEQ 75
P + P + A + + IPG GAG L+PE + L + +V +
Sbjct: 329 PLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI 388
Query: 76 LDEDVEEMLLQIADDFIESVVTAACQLA-RHRKSSTLEVKDVQLHLERQWNMWIPGFGSE 134
L E L+Q+AD QLA H L K +++ L + N+ +P G E
Sbjct: 389 LFNKKENALVQMADG-------NQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQE 441
Query: 135 E 135
+
Sbjct: 442 D 442
>gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Homo
sapiens]
Length = 557
Score = 30.0 bits (66), Expect = 0.90
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 22 PASTPPQGSMANSTAVVKIPGTPGAG------GRLSPENNQVLTKKKLQDLVREVDPNEQ 75
P + P + A + + IPG GAG L+PE + L + +V +
Sbjct: 336 PLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI 395
Query: 76 LDEDVEEMLLQIADDFIESVVTAACQLA-RHRKSSTLEVKDVQLHLERQWNMWIPGFGSE 134
L E L+Q+AD QLA H L K +++ L + N+ +P G E
Sbjct: 396 LFNKKENALVQMADG-------NQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQE 448
Query: 135 E 135
+
Sbjct: 449 D 449
>gi|17017980 kelch-like 4 isoform 2 [Homo sapiens]
Length = 720
Score = 30.0 bits (66), Expect = 0.90
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 55 NQVLTKKKLQDLVREVDPN--EQLDEDVEEMLLQIADDFIESVVTAACQL 102
N VL K+ + + VDPN L + +LQ+ +D IES++ AAC L
Sbjct: 213 NDVLEAKQEEVRMEGVDPNALNSLVQYAYTGVLQLKEDTIESLLAAACLL 262
>gi|17017982 kelch-like 4 isoform 1 [Homo sapiens]
Length = 718
Score = 30.0 bits (66), Expect = 0.90
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 55 NQVLTKKKLQDLVREVDPN--EQLDEDVEEMLLQIADDFIESVVTAACQL 102
N VL K+ + + VDPN L + +LQ+ +D IES++ AAC L
Sbjct: 213 NDVLEAKQEEVRMEGVDPNALNSLVQYAYTGVLQLKEDTIESLLAAACLL 262
>gi|117414152 transcription factor 19 [Homo sapiens]
Length = 345
Score = 29.6 bits (65), Expect = 1.2
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 9 LINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVR 68
L ++ + S ++P+P + P S V PG G P+ N+ +K + ++
Sbjct: 176 LNSIGSLSKLRPQPLTFSPSWGGPKSLPVPAPPGEMGTTPSAPPQRNR---RKSVHRVLA 232
Query: 69 EVDPNEQLDEDVEEMLLQ 86
E+D + E+ +L++
Sbjct: 233 ELDDESEPPENPPPVLME 250
>gi|117414156 transcription factor 19 [Homo sapiens]
Length = 345
Score = 29.6 bits (65), Expect = 1.2
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 9 LINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVR 68
L ++ + S ++P+P + P S V PG G P+ N+ +K + ++
Sbjct: 176 LNSIGSLSKLRPQPLTFSPSWGGPKSLPVPAPPGEMGTTPSAPPQRNR---RKSVHRVLA 232
Query: 69 EVDPNEQLDEDVEEMLLQ 86
E+D + E+ +L++
Sbjct: 233 ELDDESEPPENPPPVLME 250
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 29.6 bits (65), Expect = 1.2
Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 53 ENNQVLTKKKLQDLVREVDPN----EQLDEDVEEMLLQIADDFIESVVTAACQL-ARHR- 106
+NN ++ + + L++EV+ E+ DE++ + QI D E +V+ Q+ H+
Sbjct: 2493 KNNYIVLQSSVNGLIQEVEDGKQKLEKKDEEISRLKNQIQDQ--EQLVSKLSQVEGEHQL 2550
Query: 107 -KSSTLEVKDVQLHLERQ 123
K LE++++ + LE++
Sbjct: 2551 WKEQNLELRNLTVELEQK 2568
>gi|169217174 PREDICTED: H2B histone family, member M [Homo sapiens]
Length = 248
Score = 29.3 bits (64), Expect = 1.5
Identities = 12/53 (22%), Positives = 29/53 (54%)
Query: 66 LVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQL 118
++++V L ++ ++ + D ++ + T A QLA + K T+ +D+Q+
Sbjct: 161 VLKQVHXGLSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQM 213
>gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens]
Length = 257
Score = 29.3 bits (64), Expect = 1.5
Identities = 12/53 (22%), Positives = 29/53 (54%)
Query: 66 LVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQL 118
++++V L ++ ++ + D ++ + T A QLA + K T+ +D+Q+
Sbjct: 170 VLKQVHQGLSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQM 222
>gi|169216635 PREDICTED: H2B histone family, member M [Homo sapiens]
Length = 257
Score = 29.3 bits (64), Expect = 1.5
Identities = 12/53 (22%), Positives = 29/53 (54%)
Query: 66 LVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQL 118
++++V L ++ ++ + D ++ + T A QLA + K T+ +D+Q+
Sbjct: 170 VLKQVHQGLSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQM 222
>gi|31657117 SMEK homolog 1, suppressor of mek1 [Homo sapiens]
Length = 820
Score = 29.3 bits (64), Expect = 1.5
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 11 NLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREV 70
NL++ SS P S GS + PG+PG+ + + + + TK L LV
Sbjct: 742 NLTSQSSTTNLPGSPGSPGSPGS-------PGSPGSVPKNTSQTAAITTKGGLVGLVDYP 794
Query: 71 DPNEQLDEDVEE 82
D +E DED ++
Sbjct: 795 DDDEDDDEDEDK 806
>gi|21687252 zinc finger protein 296 [Homo sapiens]
Length = 475
Score = 28.9 bits (63), Expect = 2.0
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 11/48 (22%)
Query: 16 SSIKPEPA-------STPP----QGSMANSTAVVKIPGTPGAGGRLSP 52
S+ PEPA ST P +G+ A +TA V+ PG PG+G + P
Sbjct: 300 SAAPPEPAVHAAAPTSTLPCSGGEGAGAAATAGVQEPGAPGSGAQAGP 347
>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
sapiens]
Length = 570
Score = 28.5 bits (62), Expect = 2.6
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 22 PASTPPQGSMANSTAVVKI-----PGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
P + P G+ A+ T KI P T +GG SPE+ Q + + + L RE++ Q
Sbjct: 60 PQTNPSVGTAASDTKKKKINNGTNPETTTSGGCHSPEDEQKASHQHQEALRRELEAQVQ 118
>gi|23065529 growth arrest-specific 2 like 1 isoform b [Homo
sapiens]
Length = 337
Score = 28.5 bits (62), Expect = 2.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 20 PEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREV 70
P + P G TA PGTP G R++P + + L +LVRE+
Sbjct: 172 PPAPNAPAAGEDTTETAPA--PGTPARGPRMTPSD-----LRNLDELVREI 215
>gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo
sapiens]
Length = 681
Score = 28.5 bits (62), Expect = 2.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 20 PEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREV 70
P + P G TA PGTP G R++P + + L +LVRE+
Sbjct: 172 PPAPNAPAAGEDTTETAPA--PGTPARGPRMTPSD-----LRNLDELVREI 215
>gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo
sapiens]
Length = 681
Score = 28.5 bits (62), Expect = 2.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 20 PEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREV 70
P + P G TA PGTP G R++P + + L +LVRE+
Sbjct: 172 PPAPNAPAAGEDTTETAPA--PGTPARGPRMTPSD-----LRNLDELVREI 215
>gi|109240550 paraspeckle protein 1 [Homo sapiens]
Length = 523
Score = 28.5 bits (62), Expect = 2.6
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 1 MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTP-GAGGRLSPE 53
M GP IN+ + S P PP N IPG P G G + PE
Sbjct: 393 MGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNMNNRATIPGPPMGPGPAMGPE 446
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,817,712
Number of Sequences: 37866
Number of extensions: 316316
Number of successful extensions: 1402
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 1346
Number of HSP's gapped (non-prelim): 124
length of query: 161
length of database: 18,247,518
effective HSP length: 94
effective length of query: 67
effective length of database: 14,688,114
effective search space: 984103638
effective search space used: 984103638
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.