Guide to the Human Genome
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Name: HIST3H2BB Sequence: fasta or formatted (126aa) NCBI GI: 28173554
Description:

histone cluster 3, H2bb

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         12           1
 C cysteine            0.0          0           0
 D aspartate           3.2          4           1
 E glutamate           4.8          6           1
 F phenylalanine       1.6          2           1
 G glycine             5.6          7           1
 H histidine           2.4          3           1
 I isoleucine          4.8          6           1
 K lysine             15.9         20           2
 L leucine             4.8          6           3
 M methionine          2.4          3           1
 N asparagine          2.4          3           1
 P proline             4.8          6           1
 Q glutamine           2.4          3           1
 R arginine            6.3          8           1
 S serine             11.9         15           2
 T threonine           6.3          8           1
 V valine              7.1          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            4.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   histone cluster 3, H2bb 
HIST1H2BO             0.977   histone cluster 1, H2bo 
HIST1H2BH             0.977   histone cluster 1, H2bh 
HIST1H2BN             0.973   histone cluster 1, H2bn 
HIST1H2BB             0.973   histone cluster 1, H2bb 
HIST2H2BE             0.968   histone cluster 2, H2be 
HIST2H2BF             0.968   histone cluster 2, H2bf isoform b 
HIST2H2BF             0.968   histone cluster 2, H2bf isoform a 
HIST1H2BD             0.968   histone cluster 1, H2bd 
HIST1H2BD             0.968   histone cluster 1, H2bd 
HIST1H2BE             0.968   histone cluster 1, H2be 
HIST1H2BF             0.968   histone cluster 1, H2bf 
HIST1H2BG             0.968   histone cluster 1, H2bg 
HIST1H2BC             0.968   histone cluster 1, H2bc 
HIST1H2BI             0.968   histone cluster 1, H2bi 
HIST1H2BJ             0.964   histone cluster 1, H2bj 
HIST1H2BK             0.964   histone cluster 1, H2bk 
HIST1H2BL             0.959   histone cluster 1, H2bl 
HIST1H2BM             0.946   histone cluster 1, H2bm 
HIST1H2BA             0.828   histone cluster 1, H2ba 
H2BFM                 0.330   PREDICTED: H2B histone family, member M 
H2BFM                 0.330   PREDICTED: H2B histone family, member M 
H2BFM                 0.330   PREDICTED: H2B histone family, member M 
H2BFWT                0.326   H2B histone family, member W, testis-specific 
LOC100129702          0.068   PREDICTED: similar to RAB40A, member RAS oncogene f...
LOC100129702          0.068   PREDICTED: similar to RAB40A, member RAS oncogene f...
LOC100129702          0.068   PREDICTED: similar to RAB40A, member RAS oncogene f...
BTBD11                0.045   BTB (POZ) domain containing 11 isoform a 
TAF12                 0.041   TAF12 RNA polymerase II, TATA box binding protein (...
TAF12                 0.041   TAF12 RNA polymerase II, TATA box binding protein (TB...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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