Guide to the Human Genome
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Name: H2BFM Sequence: fasta or formatted (248aa) NCBI GI: 169217174
Description:

PREDICTED: H2B histone family, member M

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Other entries for this name:
alt prot [257aa] PREDICTED: H2B histone family, member M
alt prot [257aa] PREDICTED: H2B histone family, member M
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         23           3
 C cysteine            2.4          6           1
 D aspartate           4.0         10           1
 E glutamate           4.0         10           2
 F phenylalanine       2.8          7           1
 G glycine             6.0         15           1
 H histidine           2.8          7           1
 I isoleucine          4.4         11           1
 K lysine              6.5         16           1
 L leucine             8.5         21           3
 M methionine          3.2          8           1
 N asparagine          2.0          5           1
 P proline             5.6         14           2
 Q glutamine           6.0         15           3
 R arginine            6.5         16           3
 S serine              8.1         20           2
 T threonine           6.9         17           2
 V valine              4.4         11           2
 W tryptophan          1.2          3           1
 X unknown             4.0         10           9
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: H2B histone family, member M 
H2BFM                 0.965   PREDICTED: H2B histone family, member M 
H2BFM                 0.965   PREDICTED: H2B histone family, member M 
H2BFWT                0.405   H2B histone family, member W, testis-specific 
HIST1H2BL             0.166   histone cluster 1, H2bl 
HIST1H2BK             0.166   histone cluster 1, H2bk 
HIST1H2BE             0.166   histone cluster 1, H2be 
HIST1H2BF             0.166   histone cluster 1, H2bf 
HIST1H2BG             0.166   histone cluster 1, H2bg 
HIST1H2BC             0.166   histone cluster 1, H2bc 
HIST1H2BI             0.166   histone cluster 1, H2bi 
HIST2H2BE             0.166   histone cluster 2, H2be 
HIST1H2BJ             0.166   histone cluster 1, H2bj 
HIST1H2BH             0.164   histone cluster 1, H2bh 
HIST1H2BO             0.164   histone cluster 1, H2bo 
HIST1H2BN             0.164   histone cluster 1, H2bn 
HIST1H2BD             0.164   histone cluster 1, H2bd 
HIST1H2BD             0.164   histone cluster 1, H2bd 
HIST1H2BB             0.164   histone cluster 1, H2bb 
HIST2H2BF             0.162   histone cluster 2, H2bf isoform b 
HIST2H2BF             0.162   histone cluster 2, H2bf isoform a 
HIST3H2BB             0.162   histone cluster 3, H2bb 
HIST1H2BM             0.162   histone cluster 1, H2bm 
HIST1H2BA             0.159   histone cluster 1, H2ba 
C12orf51              0.024   chromosome 12 open reading frame 51 
LOC340096             0.020   PREDICTED: similar to hCG1642908 
LOC391769             0.018   PREDICTED: similar to HIStone family member (his-72...
LOC391769             0.018   PREDICTED: similar to HIStone family member (his-72)...
LOC391769             0.018   PREDICTED: similar to HIStone family member (his-72)...
NKAP                  0.015   NFKB activating protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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