Guide to the Human Genome
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Name: TAF12 Sequence: fasta or formatted (161aa) NCBI GI: 206725450
Description:

TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20 kD

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt mRNA [161aa] TAF12 RNA polymerase II, TATA box binding protein (TBP)-associate...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         12           2
 C cysteine            1.2          2           1
 D aspartate           4.3          7           2
 E glutamate           8.1         13           2
 F phenylalanine       2.5          4           1
 G glycine             5.0          8           2
 H histidine           1.9          3           1
 I isoleucine          5.0          8           1
 K lysine              8.1         13           3
 L leucine             8.7         14           2
 M methionine          3.1          5           1
 N asparagine          5.0          8           2
 P proline             6.8         11           2
 Q glutamine           6.2         10           1
 R arginine            5.0          8           1
 S serine              7.5         12           2
 T threonine           6.2         10           2
 V valine              6.2         10           2
 W tryptophan          1.2          2           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TAF12 RNA polymerase II, TATA box binding protein (... 
TAF12                 1.000   TAF12 RNA polymerase II, TATA box binding protein (TB...
DR1                   0.040   down-regulator of transcription 1 
HIST3H2BB             0.030   histone cluster 3, H2bb 
COL7A1                0.027   alpha 1 type VII collagen precursor 
UNK                   0.023   zinc finger CCCH-type domain containing 5 
PCGF6                 0.023   polycomb group ring finger 6 isoform a 
PCGF6                 0.023   polycomb group ring finger 6 isoform b 
TBC1D13               0.023   TBC1 domain family, member 13 
AKAP9                 0.017   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.017   A-kinase anchor protein 9 isoform 3 
WDR43                 0.017   WD repeat domain 43 
PTBP1                 0.017   polypyrimidine tract-binding protein 1 isoform c [Ho...
PTBP1                 0.017   polypyrimidine tract-binding protein 1 isoform b [Ho...
PTBP1                 0.017   polypyrimidine tract-binding protein 1 isoform a [Hom...
KLHL4                 0.017   kelch-like 4 isoform 2 
KLHL4                 0.017   kelch-like 4 isoform 1 
TCF19                 0.017   transcription factor 19 
TCF19                 0.017   transcription factor 19 
CENPF                 0.017   centromere protein F 
H2BFM                 0.013   PREDICTED: H2B histone family, member M 
H2BFM                 0.013   PREDICTED: H2B histone family, member M 
H2BFM                 0.013   PREDICTED: H2B histone family, member M 
SMEK1                 0.013   SMEK homolog 1, suppressor of mek1 
ZNF296                0.013   zinc finger protein 296 
LOC645202             0.010   PREDICTED: hypothetical protein LOC645202 
GAS2L1                0.010   growth arrest-specific 2 like 1 isoform b 
GAS2L1                0.010   growth arrest-specific 2 like 1 isoform a 
GAS2L1                0.010   growth arrest-specific 2 like 1 isoform a 
PSPC1                 0.010   paraspeckle protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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