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Search of human proteins with 5032113
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5032113 survival motor neuron domain containing 1 [Homo
sapiens]
(238 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5032113 survival motor neuron domain containing 1 [Homo sapiens] 474 e-134
gi|13259529 survival of motor neuron 2, centromeric isoform b [H... 60 2e-09
gi|13259531 survival of motor neuron 2, centromeric isoform c [H... 60 2e-09
gi|10937869 survival of motor neuron 2, centromeric isoform d [H... 60 2e-09
gi|13259527 survival of motor neuron 2, centromeric isoform a [H... 60 2e-09
gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo... 60 2e-09
gi|13259512 survival of motor neuron 1, telomeric isoform b [Hom... 60 2e-09
gi|225703108 tudor domain containing 3 isoform 2 [Homo sapiens] 55 5e-08
gi|225703106 tudor domain containing 3 isoform 1 [Homo sapiens] 55 5e-08
gi|13540576 tudor domain containing 3 isoform 2 [Homo sapiens] 55 5e-08
gi|133925795 zinc finger, CCCH-type with G patch domain isoform ... 47 1e-05
gi|133925793 zinc finger, CCCH-type with G patch domain isoform ... 47 1e-05
gi|133925791 zinc finger, CCCH-type with G patch domain isoform ... 47 1e-05
gi|34878777 ring finger protein 20 [Homo sapiens] 41 8e-04
gi|122937227 U2-associated SR140 protein [Homo sapiens] 41 8e-04
gi|62750354 matrin 3 [Homo sapiens] 38 0.007
gi|21626466 matrin 3 [Homo sapiens] 38 0.007
gi|50513245 chromatin assembly factor 1, subunit A (p150) [Homo ... 37 0.012
gi|41327779 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Homo sapi... 37 0.012
gi|38505161 tudor domain containing 1 [Homo sapiens] 37 0.020
gi|41872583 Rho-associated, coiled-coil containing protein kinas... 36 0.026
gi|21493022 A kinase (PRKA) anchor protein 12 isoform 1 [Homo sa... 36 0.026
gi|21493024 A kinase (PRKA) anchor protein 12 isoform 2 [Homo sa... 36 0.026
gi|7705415 hook homolog 1 [Homo sapiens] 36 0.026
gi|221139764 PHD and ring finger domains 1 [Homo sapiens] 36 0.026
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens] 36 0.026
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens] 36 0.026
gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens] 36 0.026
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 36 0.033
gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens] 36 0.033
>gi|5032113 survival motor neuron domain containing 1 [Homo sapiens]
Length = 238
Score = 474 bits (1220), Expect = e-134
Identities = 238/238 (100%), Positives = 238/238 (100%)
Query: 1 MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLAS 60
MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLAS
Sbjct: 1 MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLAS 60
Query: 61 SDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL 120
SDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL
Sbjct: 61 SDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL 120
Query: 121 NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ 180
NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ
Sbjct: 121 NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ 180
Query: 181 FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ 238
FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
Sbjct: 181 FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ 238
>gi|13259529 survival of motor neuron 2, centromeric isoform b [Homo
sapiens]
Length = 262
Score = 60.1 bits (144), Expect = 2e-09
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 73 WKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLN-LKPVEEGRKA 131
WKVGDKC A+WSEDG Y A I ID + T + + GYGN E L + L P+ E
Sbjct: 92 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICEVANN 151
Query: 132 KEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIK 165
E + + ++ ++ + E + K+ IK
Sbjct: 152 IEQNAQENENESQVSTDESENSRSPG-NKSDNIK 184
>gi|13259531 survival of motor neuron 2, centromeric isoform c [Homo
sapiens]
Length = 250
Score = 60.1 bits (144), Expect = 2e-09
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 73 WKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLN-LKPVEEGRKA 131
WKVGDKC A+WSEDG Y A I ID + T + + GYGN E L + L P+ E
Sbjct: 92 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICEVANN 151
Query: 132 KEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIK 165
E + + ++ ++ + E + K+ IK
Sbjct: 152 IEQNAQENENESQVSTDESENSRSPG-NKSDNIK 184
>gi|10937869 survival of motor neuron 2, centromeric isoform d [Homo
sapiens]
Length = 294
Score = 60.1 bits (144), Expect = 2e-09
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 73 WKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLN-LKPVEEGRKA 131
WKVGDKC A+WSEDG Y A I ID + T + + GYGN E L + L P+ E
Sbjct: 92 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICEVANN 151
Query: 132 KEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIK 165
E + + ++ ++ + E + K+ IK
Sbjct: 152 IEQNAQENENESQVSTDESENSRSPG-NKSDNIK 184
>gi|13259527 survival of motor neuron 2, centromeric isoform a [Homo
sapiens]
Length = 282
Score = 60.1 bits (144), Expect = 2e-09
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 73 WKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLN-LKPVEEGRKA 131
WKVGDKC A+WSEDG Y A I ID + T + + GYGN E L + L P+ E
Sbjct: 92 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICEVANN 151
Query: 132 KEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIK 165
E + + ++ ++ + E + K+ IK
Sbjct: 152 IEQNAQENENESQVSTDESENSRSPG-NKSDNIK 184
>gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo
sapiens]
Length = 294
Score = 60.1 bits (144), Expect = 2e-09
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 73 WKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLN-LKPVEEGRKA 131
WKVGDKC A+WSEDG Y A I ID + T + + GYGN E L + L P+ E
Sbjct: 92 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICEVANN 151
Query: 132 KEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIK 165
E + + ++ ++ + E + K+ IK
Sbjct: 152 IEQNAQENENESQVSTDESENSRSPG-NKSDNIK 184
>gi|13259512 survival of motor neuron 1, telomeric isoform b [Homo
sapiens]
Length = 262
Score = 60.1 bits (144), Expect = 2e-09
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 73 WKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLN-LKPVEEGRKA 131
WKVGDKC A+WSEDG Y A I ID + T + + GYGN E L + L P+ E
Sbjct: 92 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICEVANN 151
Query: 132 KEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIK 165
E + + ++ ++ + E + K+ IK
Sbjct: 152 IEQNAQENENESQVSTDESENSRSPG-NKSDNIK 184
>gi|225703108 tudor domain containing 3 isoform 2 [Homo sapiens]
Length = 651
Score = 55.1 bits (131), Expect = 5e-08
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 73 WKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRKAK 132
WK GD+C A++ ED + Y AE+E + TA + F YGN E L N+KP++ +A
Sbjct: 556 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQ--TEAW 613
Query: 133 EDSG 136
E+ G
Sbjct: 614 EEEG 617
>gi|225703106 tudor domain containing 3 isoform 1 [Homo sapiens]
Length = 744
Score = 55.1 bits (131), Expect = 5e-08
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 73 WKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRKAK 132
WK GD+C A++ ED + Y AE+E + TA + F YGN E L N+KP++ +A
Sbjct: 649 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQ--TEAW 706
Query: 133 EDSG 136
E+ G
Sbjct: 707 EEEG 710
>gi|13540576 tudor domain containing 3 isoform 2 [Homo sapiens]
Length = 651
Score = 55.1 bits (131), Expect = 5e-08
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 73 WKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRKAK 132
WK GD+C A++ ED + Y AE+E + TA + F YGN E L N+KP++ +A
Sbjct: 556 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQ--TEAW 613
Query: 133 EDSG 136
E+ G
Sbjct: 614 EEEG 617
>gi|133925795 zinc finger, CCCH-type with G patch domain isoform c
[Homo sapiens]
Length = 511
Score = 47.4 bits (111), Expect = 1e-05
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 3 EDLAKQLASYKAQLQQVEAALSG---NGENEDLLKLKKDLQEVIELTK-DLLSTQPSETL 58
E L L +Y+AQLQQVE AL + E DL +L+ DL+E+IELT+ L+S + S L
Sbjct: 4 ESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKSSLL 63
Query: 59 ASSD 62
A+ D
Sbjct: 64 AALD 67
>gi|133925793 zinc finger, CCCH-type with G patch domain isoform a
[Homo sapiens]
Length = 531
Score = 47.4 bits (111), Expect = 1e-05
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 3 EDLAKQLASYKAQLQQVEAALSG---NGENEDLLKLKKDLQEVIELTK-DLLSTQPSETL 58
E L L +Y+AQLQQVE AL + E DL +L+ DL+E+IELT+ L+S + S L
Sbjct: 4 ESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKSSLL 63
Query: 59 ASSD 62
A+ D
Sbjct: 64 AALD 67
>gi|133925791 zinc finger, CCCH-type with G patch domain isoform c
[Homo sapiens]
Length = 511
Score = 47.4 bits (111), Expect = 1e-05
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 3 EDLAKQLASYKAQLQQVEAALSG---NGENEDLLKLKKDLQEVIELTK-DLLSTQPSETL 58
E L L +Y+AQLQQVE AL + E DL +L+ DL+E+IELT+ L+S + S L
Sbjct: 4 ESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKSSLL 63
Query: 59 ASSD 62
A+ D
Sbjct: 64 AALD 67
>gi|34878777 ring finger protein 20 [Homo sapiens]
Length = 975
Score = 41.2 bits (95), Expect = 8e-04
Identities = 21/73 (28%), Positives = 41/73 (56%)
Query: 121 NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ 180
+L KA ++ N+ SK++ ++RE ++K+ ++ +R KE E+ERE QK+K +
Sbjct: 542 DLSSQSSASKASQEDANEIKSKRDEEERERERREKEREREREREKEKEREREKQKLKESE 601
Query: 181 FNNRAYSKNKKGQ 193
+ +KG+
Sbjct: 602 KERDSAKDKEKGK 614
>gi|122937227 U2-associated SR140 protein [Homo sapiens]
Length = 1029
Score = 41.2 bits (95), Expect = 8e-04
Identities = 41/186 (22%), Positives = 79/186 (42%), Gaps = 22/186 (11%)
Query: 29 NEDLLKLKKDLQEVIELTKDLLSTQPS--ETLASSDSFASTQPTHSWKVGDKCMAVWSED 86
++DL + D E + + + PS E + S+ A T W++ D+ E+
Sbjct: 733 DDDLDGVPLDATEDSKKNEPIFKVAPSKWEAVDESELEAQAVTTSKWELFDQHEESEEEE 792
Query: 87 GQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLK-----PVEEGRKAKE-------- 133
Q E E E+ ++ + + Y N + K + E ++AK
Sbjct: 793 NQNQEEESEDEEDTQSSKSEEHHLYSNPIKEEMTESKFSKYSEMSEEKRAKLREIELKVM 852
Query: 134 ------DSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYS 187
+SG +P + +Q E+ + K L++ ++ KELE+ERE K ++ +R+
Sbjct: 853 KFQDELESGKRPKKPGQSFQEQVEHYRDKLLQR-EKEKELERERERDKKDKEKLESRSKD 911
Query: 188 KNKKGQ 193
K +K +
Sbjct: 912 KKEKDE 917
>gi|62750354 matrin 3 [Homo sapiens]
Length = 847
Score = 38.1 bits (87), Expect = 0.007
Identities = 45/151 (29%), Positives = 64/151 (42%), Gaps = 16/151 (10%)
Query: 31 DLLKLKKDLQEVIELT-KDLLSTQPSETLASSDSFAST----QPTHSWKVGDKCMA---V 82
DLLK K + K+ S + S+T S + +ST Q S + G+K
Sbjct: 585 DLLKKDKSRKRSYSPDGKESPSDKKSKTDGSQKTESSTEGKEQEEKSGEDGEKDTKDDQT 644
Query: 83 WSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPV-EEGRKAKEDSGNKPMS 141
E E+E E + +E AA+ +G + T L NL V +G+K D K
Sbjct: 645 EQEPNMLLESEDELLVDEEEAAALLESGSSVGDETDLANLGDVASDGKKEPSDKAVKKDG 704
Query: 142 KKEMIAQQREYKKKKALKKAQRIKELEQERE 172
A KK LKK +I+EL+QE E
Sbjct: 705 SASAAA-------KKKLKKVDKIEELDQENE 728
>gi|21626466 matrin 3 [Homo sapiens]
Length = 847
Score = 38.1 bits (87), Expect = 0.007
Identities = 45/151 (29%), Positives = 64/151 (42%), Gaps = 16/151 (10%)
Query: 31 DLLKLKKDLQEVIELT-KDLLSTQPSETLASSDSFAST----QPTHSWKVGDKCMA---V 82
DLLK K + K+ S + S+T S + +ST Q S + G+K
Sbjct: 585 DLLKKDKSRKRSYSPDGKESPSDKKSKTDGSQKTESSTEGKEQEEKSGEDGEKDTKDDQT 644
Query: 83 WSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPV-EEGRKAKEDSGNKPMS 141
E E+E E + +E AA+ +G + T L NL V +G+K D K
Sbjct: 645 EQEPNMLLESEDELLVDEEEAAALLESGSSVGDETDLANLGDVASDGKKEPSDKAVKKDG 704
Query: 142 KKEMIAQQREYKKKKALKKAQRIKELEQERE 172
A KK LKK +I+EL+QE E
Sbjct: 705 SASAAA-------KKKLKKVDKIEELDQENE 728
>gi|50513245 chromatin assembly factor 1, subunit A (p150) [Homo
sapiens]
Length = 956
Score = 37.4 bits (85), Expect = 0.012
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 126 EEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRA 185
EE ++AKE++ K +KE+ ++R K++K K+ + L++ER +K + + +
Sbjct: 362 EEAKRAKEEAKKKKEEEKELKEKERREKREKDEKEKAEKQRLKEER--RKERQEALEAKL 419
Query: 186 YSKNKKGQVKR 196
K KK + KR
Sbjct: 420 EEKRKKEEEKR 430
Score = 30.0 bits (66), Expect = 1.8
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 126 EEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRA 185
EE K KE++ K+ +++E K+K+ ++ +R K+ +++ E Q++K ++ R
Sbjct: 355 EEKEKLKEEAKRAKEEAKKKKEEEKELKEKE--RREKREKDEKEKAEKQRLKEERRKERQ 412
Query: 186 YSKNKKGQVKR 196
+ K + KR
Sbjct: 413 EALEAKLEEKR 423
>gi|41327779 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Homo
sapiens]
Length = 600
Score = 37.4 bits (85), Expect = 0.012
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 123 KPVEEGRKAK-EDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQF 181
K +E+ R+ K E+ G + K + ++Q+ K+KK +R +E + ED+ ++
Sbjct: 497 KLLEQQRREKTENEGRRKFIKNKAWSKQKAKKEKKKKMNEKRKREEGSDIEDEDMEELLN 556
Query: 182 NNRAYSKNKKGQVKRSIFASPESVTGKVGVGT--CGIAD 218
+ R K KKG++ F TGK + T GI+D
Sbjct: 557 DTRLLKKLKKGKITEEEFEKGLLTTGKRTIKTVDLGISD 595
>gi|38505161 tudor domain containing 1 [Homo sapiens]
Length = 1189
Score = 36.6 bits (83), Expect = 0.020
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 75 VGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPV 125
+GD C A +SED Q Y A + E + + + YGN E+ L+ L P+
Sbjct: 544 IGDICCAQFSEDDQWYRASVLAYASEE-SVLVGYVDYGNFEILSLMRLCPI 593
Score = 36.6 bits (83), Expect = 0.020
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 67 TQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVE 126
++P + ++GD C A ++ D Y A + + + + +A YGN E PL ++P+
Sbjct: 985 SRPPYRPRIGDACCAKYTSDDFWYRAVV--LGTSDTDVEVLYADYGNIETLPLCRVQPIT 1042
Query: 127 EGRKA 131
A
Sbjct: 1043 SSHLA 1047
Score = 32.7 bits (73), Expect = 0.28
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 74 KVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAE 115
++G C A ++ DG Y A ++EI NG + F YGN E
Sbjct: 764 EIGQPCCAFFAGDGSWYRALVKEI-LPNGHVKVHFVDYGNIE 804
Score = 32.3 bits (72), Expect = 0.37
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 76 GDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPL 119
G+ C+A ++ D A I+ +D + A + + YGN E+ PL
Sbjct: 316 GEVCIAKYTVDQTWNRAIIQNVDVQQKKAHVLYIDYGNEEIIPL 359
>gi|41872583 Rho-associated, coiled-coil containing protein kinase 2
[Homo sapiens]
Length = 1388
Score = 36.2 bits (82), Expect = 0.026
Identities = 49/201 (24%), Positives = 81/201 (40%), Gaps = 42/201 (20%)
Query: 12 YKAQLQQVEAALSGNGENEDLLKLKKDLQEV---IELTKDLLSTQPSETLASSDSFASTQ 68
YK Q+++++ E E+ KL K+LQ+ ++ +D L+ Q TL +DS +
Sbjct: 876 YKTQVRELKE------ECEEKTKLGKELQQKKQELQDERDSLAAQLEITLTKADSEQLAR 929
Query: 69 PTHSWKVGD-------------KCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAE 115
+ D + MA ++ +A I ++E N T A N
Sbjct: 930 SIAEEQYSDLEKEKIMKELEIKEMMARHKQELTEKDATIASLEETNRTLTSDVANLANE- 988
Query: 116 VTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQK 175
KE+ NK +E +++ ++ + A KAQ K+L ER
Sbjct: 989 ----------------KEELNNKLKDVQEQLSRLKDEEISAAAIKAQFEKQLLTER---T 1029
Query: 176 VKWQQFNNRAYSKNKKGQVKR 196
+K Q N A N+K VKR
Sbjct: 1030 LKTQAVNKLAEIMNRKEPVKR 1050
>gi|21493022 A kinase (PRKA) anchor protein 12 isoform 1 [Homo
sapiens]
Length = 1782
Score = 36.2 bits (82), Expect = 0.026
Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 14/172 (8%)
Query: 46 TKDLLSTQPSETLASSDSFASTQ-----------PTHSWKVGDKCMAVWSEDGQCYEAEI 94
+ +L++T +ETLA S PT S G +A + G + EI
Sbjct: 1132 SSELVTTCQAETLAGVKSQEMVMEQAIPPDSVETPTDSETDGSTPVADFDAPGTTQKDEI 1191
Query: 95 EEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKK 154
EI EEN A+ T +G AE P +P ++ K SK E + + K
Sbjct: 1192 VEIHEENEVASGTQSGGTEAEAVPAQKERPPAPSSFVFQEE-TKEQSKMEDTLEHTD--K 1248
Query: 155 KKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKKGQVKRSIFASPESVT 206
+ +++ + + E +E + ++ + + + +G + I S E VT
Sbjct: 1249 EVSVETVSILSKTEGTQEADQYADEKTKDVPFFEGLEGSIDTGITVSREKVT 1300
>gi|21493024 A kinase (PRKA) anchor protein 12 isoform 2 [Homo
sapiens]
Length = 1684
Score = 36.2 bits (82), Expect = 0.026
Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 14/172 (8%)
Query: 46 TKDLLSTQPSETLASSDSFASTQ-----------PTHSWKVGDKCMAVWSEDGQCYEAEI 94
+ +L++T +ETLA S PT S G +A + G + EI
Sbjct: 1034 SSELVTTCQAETLAGVKSQEMVMEQAIPPDSVETPTDSETDGSTPVADFDAPGTTQKDEI 1093
Query: 95 EEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKK 154
EI EEN A+ T +G AE P +P ++ K SK E + + K
Sbjct: 1094 VEIHEENEVASGTQSGGTEAEAVPAQKERPPAPSSFVFQEE-TKEQSKMEDTLEHTD--K 1150
Query: 155 KKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKKGQVKRSIFASPESVT 206
+ +++ + + E +E + ++ + + + +G + I S E VT
Sbjct: 1151 EVSVETVSILSKTEGTQEADQYADEKTKDVPFFEGLEGSIDTGITVSREKVT 1202
>gi|7705415 hook homolog 1 [Homo sapiens]
Length = 728
Score = 36.2 bits (82), Expect = 0.026
Identities = 38/210 (18%), Positives = 90/210 (42%), Gaps = 32/210 (15%)
Query: 8 QLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSDSFAST 67
QL +YK Q+Q + LS + D L + + +E + L + + D+ T
Sbjct: 370 QLETYKRQVQDLHVKLSSESKRADTLAFE---MKRLEEKHEALLKEKERLIEQRDTLKET 426
Query: 68 QPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPL----LNLK 123
+E+ +C + + + +++ + +A ++ AE+ P+ + ++
Sbjct: 427 ----------------NEELRCSQVQQDHLNQTDASATKSYENLA-AEIMPVEYREVFIR 469
Query: 124 PVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALK-------KAQRIKELEQEREDQKV 176
E + + + E + +Q E K +K + +RI+EL+Q+ ED +
Sbjct: 470 LQHENKMLRLQQEGSENERIEELQEQLEQKHRKMNELETEQRLSKERIRELQQQIEDLQK 529
Query: 177 KWQQFNNRAYSKNKKGQVKRSIFASPESVT 206
Q+ +++ ++ ++K+ + A E +T
Sbjct: 530 SLQEQGSKSEGES-SSKLKQKLEAHMEKLT 558
>gi|221139764 PHD and ring finger domains 1 [Homo sapiens]
Length = 1648
Score = 36.2 bits (82), Expect = 0.026
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 115 EVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQ 174
E +P +L+ + + +E S +P +KE +A R+ +K+++ + + E R
Sbjct: 1121 ECSPTSSLERLCRHKHQRERSHERP-DRKESVAWPRDRRKRRSRSPSSEHRAREHRRPRS 1179
Query: 175 KVKWQQFNNRAYSKNKKGQVKRS 197
+ KW Q R++S +KG V+ +
Sbjct: 1180 REKWPQ--TRSHSPERKGAVREA 1200
>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 36.2 bits (82), Expect = 0.026
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 116 VTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQK 175
+T +LN+KP E +E +G + K++ AQ+ KK+ LK+ + I E E QK
Sbjct: 150 ITKVLNMKPPEILSMIEEAAGTRMYEYKKIAAQKTIEKKEAKLKEIKTILEEEITPTIQK 209
Query: 176 VKWQQFNNRAYSK 188
+K ++ + Y K
Sbjct: 210 LKEERSSYLEYQK 222
>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 36.2 bits (82), Expect = 0.026
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 116 VTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQK 175
+T +LN+KP E +E +G + K++ AQ+ KK+ LK+ + I E E QK
Sbjct: 150 ITKVLNMKPPEILSMIEEAAGTRMYEYKKIAAQKTIEKKEAKLKEIKTILEEEITPTIQK 209
Query: 176 VKWQQFNNRAYSK 188
+K ++ + Y K
Sbjct: 210 LKEERSSYLEYQK 222
>gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 36.2 bits (82), Expect = 0.026
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 116 VTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQK 175
+T +LN+KP E +E +G + K++ AQ+ KK+ LK+ + I E E QK
Sbjct: 150 ITKVLNMKPPEILSMIEEAAGTRMYEYKKIAAQKTIEKKEAKLKEIKTILEEEITPTIQK 209
Query: 176 VKWQQFNNRAYSK 188
+K ++ + Y K
Sbjct: 210 LKEERSSYLEYQK 222
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 35.8 bits (81), Expect = 0.033
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 124 PVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQER---EDQKVKWQQ 180
P EEG + PM KK+ + +E K+K+ +++ KE ++ER +D+K K +
Sbjct: 1372 PSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQ--MSSRKDKEGDKERKKSKDKKEKPKS 1429
Query: 181 FNNRAYSKNKKGQVKRSIFASPESV 205
+ ++ SK+K+ Q I A E V
Sbjct: 1430 GDAKSSSKSKRSQGPVHITAGSEPV 1454
>gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens]
Length = 888
Score = 35.8 bits (81), Expect = 0.033
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 22/157 (14%)
Query: 84 SEDGQCYEAEIEEIDEE-NGTAAITFAGYGNAEVTPLLNLKP--VEEGRKAKEDSGNKPM 140
S +G C ++E ++EE N + N+ +L+ + ++ +K +E++G +P
Sbjct: 53 SGEGSCSDSEENILEEELNEDIKVKEEQLKNSAEEEVLSSEKQLIKMEKKEEEENGERPR 112
Query: 141 SKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKKGQVKRSIFA 200
KKE +E +K+K KE E+ERE +K K N A S +
Sbjct: 113 KKKE-----KEKEKEKE-------KEKEKEREKEKEKATVSENVAAS-----AAATTPAT 155
Query: 201 SPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMP 237
SP +V V T A + Q + K+N+R P
Sbjct: 156 SPPAVNTSPSVPTTTTATE--EQVSEPKKWNLRRNRP 190
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.124 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,019,929
Number of Sequences: 37866
Number of extensions: 398240
Number of successful extensions: 3584
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 196
Number of HSP's that attempted gapping in prelim test: 2761
Number of HSP's gapped (non-prelim): 872
length of query: 238
length of database: 18,247,518
effective HSP length: 99
effective length of query: 139
effective length of database: 14,498,784
effective search space: 2015330976
effective search space used: 2015330976
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.