Guide to the Human Genome
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Name: DDX55 Sequence: fasta or formatted (600aa) NCBI GI: 41327779
Description:

DEAD (Asp-Glu-Ala-Asp) box polypeptide 55

Referenced in:

DEAD / H Helicase Family
Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         39           2
 C cysteine            1.7         10           1
 D aspartate           4.8         29           2
 E glutamate           8.7         52           3
 F phenylalanine       5.0         30           2
 G glycine             5.8         35           2
 H histidine           1.8         11           1
 I isoleucine          5.3         32           3
 K lysine             10.0         60           4
 L leucine            10.5         63           2
 M methionine          3.0         18           1
 N asparagine          3.5         21           1
 P proline             4.3         26           2
 Q glutamine           4.2         25           2
 R arginine            6.8         41           2
 S serine              4.5         27           2
 T threonine           4.5         27           2
 V valine              6.7         40           1
 W tryptophan          0.7          4           1
 Y tyrosine            1.7         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 
DDX10                 0.239   DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 
DDX18                 0.223   DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 
DDX31                 0.164   DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1 ...
DDX47                 0.151   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ...
DDX41                 0.143   DEAD-box protein abstrakt 
DDX6                  0.134   DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 
DDX46                 0.132   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
DDX23                 0.131   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
DDX27                 0.130   DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 
DDX43                 0.129   DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 
DDX17                 0.128   DEAD box polypeptide 17 isoform 3 
DDX17                 0.128   DEAD box polypeptide 17 isoform 1 
DDX47                 0.127   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 ...
DDX42                 0.127   DEAD box polypeptide 42 protein 
DDX42                 0.127   DEAD box polypeptide 42 protein 
DDX54                 0.123   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ...
DDX54                 0.123   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1...
EIF4A3                0.122   eukaryotic translation initiation factor 4A, isoform ...
DDX59                 0.122   DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 
DDX4                  0.118   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ...
DDX4                  0.118   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [...
DDX4                  0.118   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ...
EIF4A1                0.117   eukaryotic translation initiation factor 4A isoform 1...
EIF4A2                0.116   eukaryotic translation initiation factor 4A2 
DDX5                  0.115   DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 
DDX3X                 0.112   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...
DDX50                 0.111   nucleolar protein GU2 
DDX21                 0.111   DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 
DDX3Y                 0.109   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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