Guide to the Human Genome
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Name: SLC1A5 Sequence: fasta or formatted (541aa) NCBI GI: 5032093
Description:

solute carrier family 1 member 5 isoform 1

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [313aa] solute carrier family 1 member 5 isoform 2
alt prot [339aa] solute carrier family 1 member 5 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         69           3
 C cysteine            1.5          8           2
 D aspartate           3.1         17           1
 E glutamate           5.0         27           2
 F phenylalanine       4.1         22           2
 G glycine             9.8         53           2
 H histidine           0.9          5           1
 I isoleucine          5.5         30           2
 K lysine              2.4         13           1
 L leucine            15.2         82           3
 M methionine          2.0         11           2
 N asparagine          3.3         18           2
 P proline             5.0         27           2
 Q glutamine           1.8         10           2
 R arginine            4.3         23           2
 S serine              6.5         35           4
 T threonine           4.4         24           2
 V valine              9.8         53           2
 W tryptophan          0.9          5           1
 Y tyrosine            1.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 1 member 5 isoform 1 
SLC1A5                0.627   solute carrier family 1 member 5 isoform 3 
SLC1A5                0.578   solute carrier family 1 member 5 isoform 2 
SLC1A4                0.531   solute carrier family 1, member 4 isoform 1 
SLC1A3                0.378   solute carrier family 1 (glial high affinity glutam...
SLC1A4                0.369   solute carrier family 1, member 4 isoform 2 
SLC1A1                0.360   solute carrier family 1, member 1 
SLC1A6                0.358   solute carrier family 1 (high affinity aspartate/glut...
SLC1A2                0.341   excitatory amino acid transporter 2 
SLC1A7                0.336   solute carrier family 1 (glutamate transporter), me...
NOVA2                 0.012   neuro-oncological ventral antigen 2 
GPR31                 0.010   G protein-coupled receptor 31 
LDLRAD1               0.007   low density lipoprotein receptor class A domain cont...
KIAA1671              0.006   hypothetical protein LOC85379 
LOC100289134          0.006   PREDICTED: hypothetical protein XP_002343933 
LOC100131583          0.006   PREDICTED: similar to chromosome 9 open reading fra...
ATP13A1               0.005   ATPase type 13A1 
LOC100133142          0.005   PREDICTED: similar to zinc finger protein 208 [Homo...
FUSSEL18              0.005   PREDICTED: functional smad suppressing element 18 [...
LOC100132369          0.005   PREDICTED: hypothetical protein 
FUSSEL18              0.005   PREDICTED: functional smad suppressing element 18 [...
LOC100132369          0.005   PREDICTED: hypothetical protein 
LOC100133142          0.005   PREDICTED: similar to zinc finger protein 208 [Homo...
FUSSEL18              0.005   PREDICTED: functional smad suppressing element 18 [...
LOC100132369          0.005   PREDICTED: hypothetical protein 
ELN                   0.004   elastin isoform e precursor 
ELN                   0.004   elastin isoform c precursor 
ELN                   0.004   elastin isoform b precursor 
MUC16                 0.004   mucin 16 
ADCY1                 0.004   adenylate cyclase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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