Guide to the Human Genome
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Name: SLC1A3 Sequence: fasta or formatted (542aa) NCBI GI: 169790839
Description:

solute carrier family 1 (glial high affinity glutamate transporter), member 3

Referenced in:

Glutamate
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         41           2
 C cysteine            0.6          3           1
 D aspartate           3.0         16           2
 E glutamate           6.1         33           2
 F phenylalanine       4.6         25           2
 G glycine             7.7         42           2
 H histidine           0.9          5           1
 I isoleucine          9.0         49           3
 K lysine              5.2         28           3
 L leucine            10.3         56           2
 M methionine          4.8         26           1
 N asparagine          4.8         26           2
 P proline             3.5         19           2
 Q glutamine           2.8         15           2
 R arginine            4.4         24           1
 S serine              4.4         24           4
 T threonine           7.4         40           3
 V valine             10.1         55           2
 W tryptophan          0.6          3           1
 Y tyrosine            2.2         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 1 (glial high affinity glutam... 
SLC1A6                0.667   solute carrier family 1 (high affinity aspartate/glut...
SLC1A7                0.486   solute carrier family 1 (glutamate transporter), me...
SLC1A1                0.475   solute carrier family 1, member 1 
SLC1A2                0.467   excitatory amino acid transporter 2 
SLC1A4                0.393   solute carrier family 1, member 4 isoform 1 
SLC1A5                0.376   solute carrier family 1 member 5 isoform 1 
SLC1A5                0.280   solute carrier family 1 member 5 isoform 3 
SLC1A4                0.276   solute carrier family 1, member 4 isoform 2 
SLC1A5                0.273   solute carrier family 1 member 5 isoform 2 
SLCO1B3               0.007   solute carrier organic anion transporter family, memb...
ADRB3                 0.007   adrenergic, beta-3-, receptor 
DNAH17                0.006   PREDICTED: dynein, axonemal, heavy chain 17 
DNAH17                0.006   PREDICTED: dynein, axonemal, heavy chain 17 
DNAH17                0.006   PREDICTED: dynein, axonemal, heavy chain 17 
OR2G2                 0.005   olfactory receptor, family 2, subfamily G, member 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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