Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC1A7 Sequence: fasta or formatted (560aa) NCBI GI: 194239697
Description:

solute carrier family 1 (glutamate transporter), member 7

Referenced in:

Glutamate
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         51           2
 C cysteine            2.0         11           1
 D aspartate           3.6         20           2
 E glutamate           4.6         26           2
 F phenylalanine       4.6         26           2
 G glycine             6.8         38           1
 H histidine           1.6          9           2
 I isoleucine          8.4         47           2
 K lysine              3.6         20           2
 L leucine            11.6         65           2
 M methionine          3.6         20           2
 N asparagine          3.0         17           2
 P proline             5.5         31           3
 Q glutamine           3.2         18           2
 R arginine            4.1         23           2
 S serine              6.4         36           4
 T threonine           6.4         36           2
 V valine              9.3         52           2
 W tryptophan          0.5          3           1
 Y tyrosine            2.0         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 1 (glutamate transporter), me... 
SLC1A3                0.465   solute carrier family 1 (glial high affinity glutam...
SLC1A6                0.449   solute carrier family 1 (high affinity aspartate/glut...
SLC1A1                0.410   solute carrier family 1, member 1 
SLC1A2                0.396   excitatory amino acid transporter 2 
SLC1A4                0.342   solute carrier family 1, member 4 isoform 1 
SLC1A5                0.321   solute carrier family 1 member 5 isoform 1 
SLC1A4                0.241   solute carrier family 1, member 4 isoform 2 
SLC1A5                0.239   solute carrier family 1 member 5 isoform 3 
SLC1A5                0.236   solute carrier family 1 member 5 isoform 2 
IL28RA                0.006   interleukin 28 receptor, alpha isoform 1 
IL28RA                0.006   interleukin 28 receptor, alpha isoform 3 
IL28RA                0.006   interleukin 28 receptor, alpha isoform 2 
ARAF                  0.006   v-raf murine sarcoma 3611 viral oncogene homolog [Hom...
ADRB3                 0.006   adrenergic, beta-3-, receptor 
HSH2D                 0.005   hematopoietic SH2 domain containing 
PAF1                  0.005   Paf1, RNA polymerase II associated factor, homolog [...
LOC100288980          0.004   PREDICTED: hypothetical protein XP_002343835 
ATG2B                 0.004   ATG2 autophagy related 2 homolog B 
TMEM117               0.004   transmembrane protein 117 
SLC41A3               0.004   solute carrier family 41, member 3 isoform 2 
SLC41A3               0.004   solute carrier family 41, member 3 isoform 4 
SLC41A3               0.004   solute carrier family 41, member 3 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press