Guide to the Human Genome
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Name: SLC1A5 Sequence: fasta or formatted (339aa) NCBI GI: 223468566
Description:

solute carrier family 1 member 5 isoform 3

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [313aa] solute carrier family 1 member 5 isoform 2
alt prot [541aa] solute carrier family 1 member 5 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         30           2
 C cysteine            1.5          5           2
 D aspartate           2.9         10           1
 E glutamate           6.2         21           2
 F phenylalanine       4.4         15           2
 G glycine             8.3         28           2
 H histidine           1.5          5           1
 I isoleucine          7.1         24           2
 K lysine              3.2         11           1
 L leucine            13.3         45           2
 M methionine          2.9         10           2
 N asparagine          3.5         12           2
 P proline             5.0         17           1
 Q glutamine           2.1          7           2
 R arginine            3.5         12           1
 S serine              5.6         19           4
 T threonine           5.9         20           2
 V valine             10.6         36           2
 W tryptophan          1.2          4           1
 Y tyrosine            2.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 1 member 5 isoform 3 
SLC1A5                0.997   solute carrier family 1 member 5 isoform 1 
SLC1A5                0.919   solute carrier family 1 member 5 isoform 2 
SLC1A4                0.613   solute carrier family 1, member 4 isoform 1 
SLC1A4                0.586   solute carrier family 1, member 4 isoform 2 
SLC1A3                0.447   solute carrier family 1 (glial high affinity glutam...
SLC1A1                0.417   solute carrier family 1, member 1 
SLC1A6                0.411   solute carrier family 1 (high affinity aspartate/glut...
SLC1A7                0.398   solute carrier family 1 (glutamate transporter), me...
SLC1A2                0.392   excitatory amino acid transporter 2 
MUC16                 0.006   mucin 16 
COL28A1               0.006   collagen, type XXVIII precursor 
RUNX1T1               0.006   acute myelogenous leukemia 1 translocation 1 protein...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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