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Search of human proteins with 5031653
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5031653 breast carcinoma amplified sequence 2 [Homo sapiens]
(225 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5031653 breast carcinoma amplified sequence 2 [Homo sapiens] 455 e-128
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 49 3e-06
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 49 3e-06
gi|34878904 synaptonemal complex protein 1 [Homo sapiens] 40 0.002
gi|45430055 translokin [Homo sapiens] 40 0.002
gi|56550043 sarcolemma associated protein [Homo sapiens] 37 0.014
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 37 0.018
gi|16262452 cingulin [Homo sapiens] 35 0.040
gi|55770834 centromere protein F [Homo sapiens] 35 0.040
gi|34577114 cytomatrix protein p110 [Homo sapiens] 35 0.052
gi|50083279 centrosome protein 4 [Homo sapiens] 35 0.052
gi|153945715 myosin VC [Homo sapiens] 35 0.068
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens] 34 0.12
gi|28195388 RAB11 family interacting protein 4 (class II) [Homo ... 34 0.12
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens] 33 0.15
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 33 0.15
gi|21735548 centrosomal protein 2 [Homo sapiens] 33 0.15
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 33 0.20
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 33 0.20
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 33 0.20
gi|4885583 Rho-associated, coiled-coil containing protein kinase... 33 0.26
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 32 0.34
gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens] 32 0.34
gi|157388975 coiled-coil domain containing 99 [Homo sapiens] 32 0.34
gi|21687020 ecotropic viral integration site 5-like isoform 2 [H... 32 0.44
gi|120587023 down-regulated in metastasis [Homo sapiens] 32 0.44
gi|89036565 PREDICTED: similar to Temporarily Assigned Gene name... 32 0.44
gi|20149533 Fc fragment of IgE, low affinity II, receptor for (C... 32 0.57
gi|215982794 myosin VA isoform 2 [Homo sapiens] 32 0.57
gi|215982791 myosin VA isoform 1 [Homo sapiens] 32 0.57
>gi|5031653 breast carcinoma amplified sequence 2 [Homo sapiens]
Length = 225
Score = 455 bits (1170), Expect = e-128
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSA 60
MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSA
Sbjct: 1 MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSA 60
Query: 61 FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR 120
FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR
Sbjct: 61 FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR 120
Query: 121 IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE 180
IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE
Sbjct: 121 IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE 180
Query: 181 MESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKENIRQDF 225
MESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKENIRQDF
Sbjct: 181 MESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKENIRQDF 225
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 49.3 bits (116), Expect = 3e-06
Identities = 43/186 (23%), Positives = 87/186 (46%), Gaps = 18/186 (9%)
Query: 36 VEEETRRYRPTKNYLSYLTAPDYSAFETDIMRNEFERLAARQPIELL---SMKRYELPAP 92
+E E R+ + T + LT + E + + + E L R+ +E L SMK +L
Sbjct: 668 LERENRKLKKTLDSFKNLTF-QLESLEKENSQLDEENLELRRNVESLKCASMKMAQLQL- 725
Query: 93 SSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKE 152
+ ++ + +E + + L+ + E LE+ Q + N+ L +E++ K+
Sbjct: 726 ---ENKELESEKEQLKKGLELLKASFKKTERLEVSYQ----GLDIENQRLQKTLENSNKK 778
Query: 153 LQKLRKHIQDLNWQRKNMQLT------AGSKLREMESNWVSLVSKNYEIERTIVQLENEI 206
+Q+L +QDL + + +Q + +L ++E SL + ++E+ QLE E
Sbjct: 779 IQQLESELQDLEMENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQLEKDKKQLEKEN 838
Query: 207 YQIKQQ 212
+++QQ
Sbjct: 839 KRLRQQ 844
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 49.3 bits (116), Expect = 3e-06
Identities = 43/186 (23%), Positives = 87/186 (46%), Gaps = 18/186 (9%)
Query: 36 VEEETRRYRPTKNYLSYLTAPDYSAFETDIMRNEFERLAARQPIELL---SMKRYELPAP 92
+E E R+ + T + LT + E + + + E L R+ +E L SMK +L
Sbjct: 668 LERENRKLKKTLDSFKNLTF-QLESLEKENSQLDEENLELRRNVESLKCASMKMAQLQL- 725
Query: 93 SSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKE 152
+ ++ + +E + + L+ + E LE+ Q + N+ L +E++ K+
Sbjct: 726 ---ENKELESEKEQLKKGLELLKASFKKTERLEVSYQ----GLDIENQRLQKTLENSNKK 778
Query: 153 LQKLRKHIQDLNWQRKNMQLT------AGSKLREMESNWVSLVSKNYEIERTIVQLENEI 206
+Q+L +QDL + + +Q + +L ++E SL + ++E+ QLE E
Sbjct: 779 IQQLESELQDLEMENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQLEKDKKQLEKEN 838
Query: 207 YQIKQQ 212
+++QQ
Sbjct: 839 KRLRQQ 844
>gi|34878904 synaptonemal complex protein 1 [Homo sapiens]
Length = 976
Score = 40.0 bits (92), Expect = 0.002
Identities = 44/203 (21%), Positives = 83/203 (40%), Gaps = 13/203 (6%)
Query: 24 EAPGVREAAAALVEEETRRYRPTKNYLSYLTAPD--YSA----FETDIMRNEFERLAARQ 77
E G + L++ + + L+ +T + YS +T++ + +
Sbjct: 459 ELKGTEQELIGLLQAREKEVHDLEIQLTAITTSEQYYSKEVKDLKTELENEKLKNTELTS 518
Query: 78 PIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKV 137
LS++ EL +S ++ QE +NN+ Q E +IENL+ N +
Sbjct: 519 HCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLKQIENLQETETQLRNELEY 578
Query: 138 YNENLVHMIEHAQKELQKLRKHIQDLNWQRKNM-----QLTAGSKLREMESNWVSLVSKN 192
E L + + +L K ++ +L Q +N +L +K + + S
Sbjct: 579 VREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGTAESKQLNV 638
Query: 193 YEIERTIVQLENEIYQIKQQHGE 215
YEI+ + +LE E+ KQ+ GE
Sbjct: 639 YEIK--VNKLELELESAKQKFGE 659
Score = 28.9 bits (63), Expect = 3.7
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 107 VNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHM-------IEHAQKELQKLRKH 159
V + +LE++ +++N EL S CN + N+ L +++ Q+++ +K
Sbjct: 499 VKDLKTELENE--KLKNTELTSH--CNKLSLENKELTQETSDMTLELKNQQEDINNNKKQ 554
Query: 160 IQDLNWQRKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANK- 218
+ + Q +N+Q T E+E L K E++ + + E +++Q NK
Sbjct: 555 EERMLKQIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKY 614
Query: 219 -ENIRQD 224
E ++Q+
Sbjct: 615 IEELQQE 621
>gi|45430055 translokin [Homo sapiens]
Length = 500
Score = 40.0 bits (92), Expect = 0.002
Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 16/180 (8%)
Query: 42 RYRPTKNYLSYLTAPDYSAF------ETDIMRNEFERLAARQPIELLSMKRYELPAPSSG 95
R P+K L+Y + + F + I R E ER+ A + ++ LS + E
Sbjct: 51 RRSPSKPTLAYPESNSRAIFSALKNLQDKIRRLELERIQAEESVKTLSRETIEYKKVLDE 110
Query: 96 QKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQK 155
Q QE N+ + +H L L +++ CN + E + +MI+HA+ E
Sbjct: 111 QI------QERENSKNEESKHNQELTSQL-LAAENKCNLLEKQLEYMRNMIKHAEMERTS 163
Query: 156 LRKHIQDLNWQRKNMQLTAGSKLRE---MESNWVSLVSKNYEIERTIVQLENEIYQIKQQ 212
+ + L +R++ Q S+L + +E + L + E+ + +LE ++++ +Q+
Sbjct: 164 VLEKQVSLERERQHDQTHVQSQLEKLDLLEQEYNKLTTMQALAEKKMQELEAKLHEEEQE 223
Score = 29.3 bits (64), Expect = 2.8
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 116 HQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAG 175
H ++E L+L+ Q YN+ L M A+K++Q+L + + +RK MQ A
Sbjct: 181 HVQSQLEKLDLLEQE-------YNK-LTTMQALAEKKMQELEAKLHEEEQERKRMQAKAA 232
Query: 176 SKLREMESN 184
+E+N
Sbjct: 233 ELQTGLETN 241
>gi|56550043 sarcolemma associated protein [Homo sapiens]
Length = 811
Score = 37.0 bits (84), Expect = 0.014
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 114 LEHQAVRIENLELMSQHGCN-AWK--VYNENLVHMIEHAQKELQ---------KLRKHIQ 161
LE + ++ L ++Q + +W+ + + L+ +E +LQ LRK +
Sbjct: 182 LEQKLATLQRLLAITQEASDTSWQALIDEDRLLSRLEVMGNQLQACSKNQTEDSLRKELI 241
Query: 162 DLNWQRKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKENI 221
L + N + TA LR + + +V K E+ER++ E+E +K+ + E +E +
Sbjct: 242 ALQEDKHNYETTAKESLRRVLQEKIEVVRKLSEVERSLSNTEDECTHLKEMN-ERTQEEL 300
Query: 222 RQ 223
R+
Sbjct: 301 RE 302
Score = 33.1 bits (74), Expect = 0.20
Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 20/202 (9%)
Query: 29 REAAAALVEEETRRYRPTKNYLSYLTAPDYSAFE---TDIMRNEFERLAARQPIELLSMK 85
R+A VEE T++ + + L L + E ++I E L+AR I LL
Sbjct: 514 RKAYRNQVEESTKQIQVLQAQLQRLHIDTENLREEKDSEITSTRDELLSARDEILLLHQA 573
Query: 86 RYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHM 145
++ +S + DI + QE + A+LE E N++++ +
Sbjct: 574 AAKV---ASERDTDIASLQEELKKVRAELERWRKAASEYEKEITSLQNSFQLRCQQCEDQ 630
Query: 146 ----IEHAQKELQKLRKHIQDLNWQ-----RKNMQLTAGSKLREMESNWVSLVSKNYEIE 196
Q EL+KLRK L + R+N+ L++ + +E E + S +
Sbjct: 631 QREEATRLQGELEKLRKEWNALETECHSLKRENVLLSSELQRQEKELHNSQKQSLELTSD 690
Query: 197 RTIVQ-----LENEIYQIKQQH 213
+I+Q LEN++ +K+QH
Sbjct: 691 LSILQMSRKELENQVGSLKEQH 712
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 36.6 bits (83), Expect = 0.018
Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 19/166 (11%)
Query: 67 RNEFERLAARQPIELLSMKRYELPAPSSGQKND-------ITAWQECVNNSMAQLEHQAV 119
+ ++E L A+Q K E A SSG + + +E +N + + +
Sbjct: 1442 KTQYEELKAQQD------KVMETSAQSSGDHQEQHVSVQEMQELKETLNQAETKSKSLES 1495
Query: 120 RIENLE-LMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKL 178
++ENL+ +S+ A NL Q EL +LR+ +QD Q + ++ K
Sbjct: 1496 QVENLQKTLSEKETEA-----RNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKE 1550
Query: 179 REMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKENIRQD 224
+ V+ SK + QL E ++KQ++G +++ D
Sbjct: 1551 EKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELD 1596
Score = 27.7 bits (60), Expect = 8.3
Identities = 17/68 (25%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 139 NENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLV--SKNYEIE 196
NE L +E+ +++++L + +++ N + +QL KL E++++ VS+ K E E
Sbjct: 131 NERLSQELEYLTEDVKRLNEKLKESNTTKGELQL----KLDELQASDVSVKYREKRLEQE 186
Query: 197 RTIVQLEN 204
+ ++ +N
Sbjct: 187 KELLHSQN 194
>gi|16262452 cingulin [Homo sapiens]
Length = 1203
Score = 35.4 bits (80), Expect = 0.040
Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 146 IEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSL---VSKNYEIERTIVQL 202
+E +KEL + ++ +++L +R++ ++ + RE+E L + E+E +QL
Sbjct: 627 VEVLKKELLRTQEELKELQAERQSQEVAGRHRDRELEKQLAVLRVEADRGRELEEQNLQL 686
Query: 203 ENEIYQIKQQHGEANK 218
+ + Q++Q EA+K
Sbjct: 687 QKTLQQLRQDCEEASK 702
Score = 32.3 bits (72), Expect = 0.34
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 19/122 (15%)
Query: 113 QLEHQAVRIENLELMSQHGCNAWKVYN--ENLVHMIEHAQKELQKLRKHIQD-------L 163
Q + +R+ EL + G +V + + + H+ + Q++ ++LR+ +QD L
Sbjct: 484 QRVEEQLRLRERELTALKGALKEEVASRDQEVEHVRQQYQRDTEQLRRSMQDATQDHAVL 543
Query: 164 NWQRKNMQLTAGSKLREME------SNWVSLVSKNYE----IERTIVQLENEIYQIKQQH 213
+R+ M RE+E +W S+ KN E ++ ++QL E +++++
Sbjct: 544 EAERQKMSALVRGLQRELEETSEETGHWQSMFQKNKEDLRATKQELLQLRMEKEEMEEEL 603
Query: 214 GE 215
GE
Sbjct: 604 GE 605
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 35.4 bits (80), Expect = 0.040
Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 22/169 (13%)
Query: 59 SAFETDIMRNEFERLAARQP----IELLSMKRYELPAPSSGQKND----------ITAWQ 104
S+FE + E E++ ++ +E+L + EL + ND +++
Sbjct: 2416 SSFENILQEKEQEKVQMKEKSSTAMEMLQTQLKELNERVAALHNDQEACKAKEQNLSSQV 2475
Query: 105 ECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLN 164
EC+ AQL +N ++ Q N E+ +E +E+ +L+ IQD
Sbjct: 2476 ECLELEKAQLLQGLDEAKNNYIVLQSSVNGLIQEVEDGKQKLEKKDEEISRLKNQIQD-- 2533
Query: 165 WQRKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQH 213
Q SKL ++E +N E+ V+LE +I ++ ++
Sbjct: 2534 ------QEQLVSKLSQVEGEHQLWKEQNLELRNLTVELEQKIQVLQSKN 2576
Score = 30.8 bits (68), Expect = 0.98
Identities = 33/168 (19%), Positives = 68/168 (40%), Gaps = 20/168 (11%)
Query: 54 TAPDYSAFETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQ 113
T +++A E + + E E L A+ S++ EL D+ + N +
Sbjct: 2350 TNQEHAALEAENSKGEVETLKAKIEGMTQSLRGLEL---------DVVTIRSEKENLTNE 2400
Query: 114 LEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLT 173
L+ + RI LE+++ N + + V M E + ++ L+ +++LN
Sbjct: 2401 LQKEQERISELEIINSSFENILQEKEQEKVQMKEKSSTAMEMLQTQLKELN--------- 2451
Query: 174 AGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKENI 221
++ + ++ + +K + + LE E Q+ Q EA I
Sbjct: 2452 --ERVAALHNDQEACKAKEQNLSSQVECLELEKAQLLQGLDEAKNNYI 2497
Score = 28.9 bits (63), Expect = 3.7
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 154 QKLRKHIQDLNWQRKNMQLTAGS---KLREMESNWVSLVSKNYEIERTIVQ--------L 202
QKL+K +DL+ QR+N + S K++E E + +S+ +T+ Q L
Sbjct: 362 QKLKKLTEDLSCQRQNAESARCSLEQKIKEKEKEFQEELSRQQRSFQTLDQECIQMKARL 421
Query: 203 ENEIYQIKQQHGEANKE 219
E+ Q K H E
Sbjct: 422 TQELQQAKNMHNVLQAE 438
>gi|34577114 cytomatrix protein p110 [Homo sapiens]
Length = 957
Score = 35.0 bits (79), Expect = 0.052
Identities = 37/202 (18%), Positives = 92/202 (45%), Gaps = 18/202 (8%)
Query: 37 EEETRRYRPTKNYLSYLTAPDYSAFETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQ 96
EEE ++ K++ ++ + ++ + E E LA + +E LS + +
Sbjct: 416 EEEIKQIEVYKSHSKFMKTK-IDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVL 474
Query: 97 KNDITAWQECVNNSMAQLEHQAVRIENLE------------LMSQHGCNAWKVYNENLVH 144
K +TA ++ +++ +R+E E L + G A ++ ++
Sbjct: 475 KESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEI--RDMKD 532
Query: 145 MIEHAQKELQKLRKHIQDLNWQ--RKNMQLT-AGSKLREMESNWVSLVSKNYEIERTIVQ 201
M+E ++++ L+K I++L Q K+ QLT +++ ++++ + + +E + +
Sbjct: 533 MLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSE 592
Query: 202 LENEIYQIKQQHGEANKENIRQ 223
E I ++K+Q ++E + +
Sbjct: 593 KERIIERLKEQRERDDRERLEE 614
>gi|50083279 centrosome protein 4 [Homo sapiens]
Length = 1140
Score = 35.0 bits (79), Expect = 0.052
Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 19/183 (10%)
Query: 30 EAAAALVEEETRRYRPTKNYLSYLTAPDYSAFETDIMRNEFERLAARQPIELLSMKRYEL 89
E AA+ E+E + R K Y+T + S +E+ + E E ++L + +
Sbjct: 840 ELEAAVQEKEEMKSRVHK----YIT--EVSRWESLMAAKEKENQDLLDRFQMLHNRAEDW 893
Query: 90 PAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHA 149
+ + + ++ + + + + H R+E LE Q NA Y + M + A
Sbjct: 894 EVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAK-A 952
Query: 150 QKELQKLRKHIQDLNWQRKNMQLTAGSKLREM--------ESNWVSLVSKNYEIERTIVQ 201
L++ +H +D K L S LRE+ + L SKN E ER +V+
Sbjct: 953 MSRLEEELRHQED----EKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVE 1008
Query: 202 LEN 204
LEN
Sbjct: 1009 LEN 1011
>gi|153945715 myosin VC [Homo sapiens]
Length = 1742
Score = 34.7 bits (78), Expect = 0.068
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 120 RIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLR 179
+I+ LE + + Y E + +++L KL+KH +L Q++ +QL K
Sbjct: 925 KIQKLEAELEKAATHRRNYEEKGKRYRDAVEEKLAKLQKHNSELETQKEQIQLKLQEKTE 984
Query: 180 EMESNWVSLVSKNYE----IERTIVQLENEIYQIKQQHGEANKENIRQD 224
E++ +L + ++ ER + LE +++K Q E ++++++
Sbjct: 985 ELKEKMDNLTKQLFDDVQKEERQRMLLEKS-FELKTQDYEKQIQSLKEE 1032
>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
Length = 1780
Score = 33.9 bits (76), Expect = 0.12
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 105 ECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLN 164
E V ++A++E V EN E G A+ + EN + + + EL K H Q
Sbjct: 825 EEVRPNIAEIEDIRVLQENNE-----GLRAFLLTIENELKNEKEEKAELNKQIVHFQQEL 879
Query: 165 WQRKNMQLTAGSKLREMESNWVSLV-------SKNYEIERTIVQLENEI 206
+ LT ++++++SN+ + SKN E E I++L NEI
Sbjct: 880 SLSEKKNLTLSKEVQQIQSNYDIAIAELHVQKSKNQEQEEKIMKLSNEI 928
>gi|28195388 RAB11 family interacting protein 4 (class II) [Homo
sapiens]
Length = 637
Score = 33.9 bits (76), Expect = 0.12
Identities = 39/198 (19%), Positives = 82/198 (41%), Gaps = 38/198 (19%)
Query: 32 AAALVEEETRRYRPTKNYLSYLTAPDYSAFETDIMRNEFERLAARQPIELLSMKRYELPA 91
A +EEE RR+R L ER A + +ELL+ + +L
Sbjct: 393 AEQALEEEARRHREAYGKL--------------------EREKATE-VELLNARVQQLEE 431
Query: 92 PSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQK 151
++ + +T + + + + R+E+ L + + +K + L QK
Sbjct: 432 ENTELRTTVTRLKSQTEKLDEERQRMSDRLEDTSLRLKDEMDLYKRMMDKLRQNRLEFQK 491
Query: 152 ELQKLRKHIQDLNWQRKNMQL------------TAGSKLREMESNWVSLVSKNYEIERTI 199
E + ++ I+DL + +++Q+ +A S L E + ++ E+E +
Sbjct: 492 EREATQELIEDLRKELEHLQMYKLDCERPGRGRSASSGLGEFNAR-----AREVELEHEV 546
Query: 200 VQLENEIYQIKQQHGEAN 217
+L+ E Y+++ Q+ + N
Sbjct: 547 KRLKQENYKLRDQNDDLN 564
>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
Length = 1684
Score = 33.5 bits (75), Expect = 0.15
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 26/147 (17%)
Query: 94 SGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHA---- 149
+ D+ A E + ++ LE Q + ++ + M A K+ E + EHA
Sbjct: 1065 NSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIK--EHATTVN 1122
Query: 150 ---------QKELQKLRKHIQDLNWQRKNMQLTAGSKL------REMESNWVSLVSKNYE 194
QKE ++L+K +Q+L +K+ Q T + R M+ L +KN +
Sbjct: 1123 ELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNNK 1182
Query: 195 IERTIVQLENEIYQIKQQHGEANKENI 221
IE LE EI +I++Q E +E I
Sbjct: 1183 IE----DLEQEI-KIQKQKQETLQEEI 1204
Score = 32.7 bits (73), Expect = 0.26
Identities = 25/124 (20%), Positives = 53/124 (42%), Gaps = 5/124 (4%)
Query: 97 KNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKL 156
KN++ A + + A L+ Q N +L + N ++ Q+E++K+
Sbjct: 135 KNELMAVRSKYSEDKANLQKQLEEAMNTQLELSEQLK----FQNNSEDNVKKLQEEIEKI 190
Query: 157 RKHIQD-LNWQRKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGE 215
R ++ + + +K + T K + + + + ++ I L+ E+ Q+K H E
Sbjct: 191 RPGFEEQILYLQKQLDATTDEKKETVTQLQNIIEANSQHYQKNINSLQEELLQLKAIHQE 250
Query: 216 ANKE 219
KE
Sbjct: 251 EVKE 254
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 33.5 bits (75), Expect = 0.15
Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 14/157 (8%)
Query: 60 AFETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAV 119
A E ++++ ++LAA + + + +L A + + A E A+ E
Sbjct: 849 AKEEELVKVREKQLAAENRLTEMETLQSQLMAEKLQLQEQLQAETELC----AEAEELRA 904
Query: 120 RIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQ-------RKNMQL 172
R+ + + C+ + E +H Q E +K++++IQ+L Q R+ +QL
Sbjct: 905 RLTAKKQELEEICHDLEARVEEEEERCQHLQAEKKKMQQNIQELEEQLEEEESARQKLQL 964
Query: 173 ---TAGSKLREMESNWVSLVSKNYEIERTIVQLENEI 206
T +KL+++E + L +N ++ + LE+ I
Sbjct: 965 EKVTTEAKLKKLEEEQIILEDQNCKLAKEKKLLEDRI 1001
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 33.5 bits (75), Expect = 0.15
Identities = 36/173 (20%), Positives = 73/173 (42%), Gaps = 24/173 (13%)
Query: 64 DIMRNEFERLAAR---------------QPIELLSMKRYELPAPSSGQKNDITAWQECVN 108
D++R++ ++L R Q ++ + E + G++N + + ++
Sbjct: 1260 DVLRDQVQKLEERLTDTEAEKSQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELH 1319
Query: 109 NSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRK 168
+MA L+ + R E + +Q + ENL +EH Q + + R +
Sbjct: 1320 ETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVEHLQAAVVEARAQASAAGILEE 1379
Query: 169 NMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKENI 221
+++ TA S L+ L ++ E ER Q E ++K G+A +EN+
Sbjct: 1380 DLR-TARSALK--------LKNEEVESERERAQALQEQGELKVAQGKALQENL 1423
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 33.1 bits (74), Expect = 0.20
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 151 KELQKLRKHIQDLNWQRKNMQLTAGSKLREME---SNWVSLVSKNYEIERTIVQLENEIY 207
+++ L++ I+ L+ Q +++ L + +E+E + WV KN E+ +VQ+EN++
Sbjct: 5882 EDVMVLKEQIEHLHRQWEDLCLRVAIRKQEIEDRLNTWVVFNEKNKELCAWLVQMENKVL 5941
Query: 208 QIKQQHGEANKENIRQD 224
Q E E +++D
Sbjct: 5942 QTADISIEEMIEKLQKD 5958
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 33.1 bits (74), Expect = 0.20
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 151 KELQKLRKHIQDLNWQRKNMQLTAGSKLREME---SNWVSLVSKNYEIERTIVQLENEIY 207
+++ L++ I+ L+ Q +++ L + +E+E + WV KN E+ +VQ+EN++
Sbjct: 5882 EDVMVLKEQIEHLHRQWEDLCLRVAIRKQEIEDRLNTWVVFNEKNKELCAWLVQMENKVL 5941
Query: 208 QIKQQHGEANKENIRQD 224
Q E E +++D
Sbjct: 5942 QTADISIEEMIEKLQKD 5958
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 33.1 bits (74), Expect = 0.20
Identities = 38/190 (20%), Positives = 84/190 (44%), Gaps = 33/190 (17%)
Query: 61 FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR 120
F M++ FE+ AA+ E+ +K + +++ A ++ V +L +A
Sbjct: 152 FNIKQMKDLFEQKAAQLATEIADIK-----SKYDEERSLREAAEQKVTRLTEELNKEATV 206
Query: 121 IENL--ELMSQHGCNAWKVYNENLV-------HMIEHAQKELQKLRKHIQDLNWQRKNMQ 171
I++L EL+ + G V + LV +M ++E +KL+ + L Q + +
Sbjct: 207 IQDLKTELLQRPGIEDVAVLKKELVQVQTLMDNMTLERERESEKLKDECKKLQSQYASSE 266
Query: 172 LTAGS-----------------KLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHG 214
T +L++++S+ L KN + +++ E + +++++H
Sbjct: 267 ATISQLRSELAKGPQEVAVYVQELQKLKSSVNELTQKNQTLTENLLKKEQDYTKLEEKHN 326
Query: 215 E--ANKENIR 222
E +K+NI+
Sbjct: 327 EESVSKKNIQ 336
Score = 32.3 bits (72), Expect = 0.34
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 24/179 (13%)
Query: 63 TDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIE 122
T+ ++N+ E + +Q E L + E A ++ + + + VN +QL ++
Sbjct: 581 TEKLKNQSE--SHKQAQENLHDQVQEQKAHLRAAQDRVLSLETSVNELNSQLNESKEKVS 638
Query: 123 NLE----------LMSQHGCNAWKVYNENLVHMIEHA----QKELQKLRKHIQDLNWQRK 168
L+ L ++ A + +N + ++A Q+EL K+ + + + +
Sbjct: 639 QLDIQIKAKTELLLSAEAAKTAQRADLQNHLDTAQNALQDKQQELNKITTQLDQVTAKLQ 698
Query: 169 NMQLTAG---SKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKENIRQD 224
+ Q S L+E + ++SL K E+E I +LE + ++K A+KE QD
Sbjct: 699 DKQEHCSQLESHLKEYKEKYLSLEQKTEELEGQIKKLEADSLEVK-----ASKEQALQD 752
Score = 29.6 bits (65), Expect = 2.2
Identities = 32/160 (20%), Positives = 66/160 (41%), Gaps = 9/160 (5%)
Query: 62 ETDIMRNEFERLAARQPIEL--LSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAV 119
ET I E EL + M++ L S K+ ++ + + NS ++ E +
Sbjct: 822 ETKIQHEELNNRIQTTVTELQKVKMEKEALMTELSTVKDKLSKVSDSLKNSKSEFEKENQ 881
Query: 120 RIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLR 179
+ + L + C K L +E+ KE ++L+K ++ ++L +L
Sbjct: 882 KGKAAILDLEKTCKELK---HQLQVQMENTLKEQKELKKSLEKEKEASHQLKL----ELN 934
Query: 180 EMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKE 219
M+ + + + E+ QL+ I ++KQ + K+
Sbjct: 935 SMQEQLIQAQNTLKQNEKEEQQLQGNINELKQSSEQKKKQ 974
>gi|4885583 Rho-associated, coiled-coil containing protein kinase 1
[Homo sapiens]
Length = 1354
Score = 32.7 bits (73), Expect = 0.26
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 15/132 (11%)
Query: 109 NSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRK 168
N LE +IE +++ QH N ++ E + + E+ L+ ++DL +
Sbjct: 472 NQRRNLESTVSQIEKEKMLLQHRINEYQRKAEQENEKRRNVENEVSTLKDQLEDLKKVSQ 531
Query: 169 NMQLT-------------AGSKLREMESNWVSLVSKNYEIERTIVQLE--NEIYQIKQQH 213
N QL A LR V L + E+ ++I QLE N Q + +
Sbjct: 532 NSQLANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRI 591
Query: 214 GEANKENIRQDF 225
E +K +D+
Sbjct: 592 LENSKSQTDKDY 603
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 32.3 bits (72), Expect = 0.34
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 150 QKELQKLRKHIQDLNWQ-------RKNMQL---TAGSKLREMESNWVSLVSKNYEIERTI 199
Q E +K++ HIQDL Q R+ +QL TA +K+++ME + L +N + +
Sbjct: 942 QNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFIKEK 1001
Query: 200 VQLENEIYQIKQQHGEANKE 219
+E+ I + Q E ++
Sbjct: 1002 KLMEDRIAECSSQLAEEEEK 1021
>gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens]
Length = 731
Score = 32.3 bits (72), Expect = 0.34
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 140 ENLVHMIEHAQKELQKL-------RKHIQDLNWQRKNMQLTAGSKLREMESNWVSLVSKN 192
E L H E ++E+QKL R +QD+ Q+ N +A +L+++ +
Sbjct: 469 EELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQIAGQKASK 528
Query: 193 YEIERTIVQLENEIYQIKQ 211
E+E + +L+ E + I++
Sbjct: 529 QELETELERLKQEFHYIEE 547
Score = 27.7 bits (60), Expect = 8.3
Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 93 SSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKE 152
+S Q + +QE ++ + A L+ + + ++ N ++ +NL I A+++
Sbjct: 340 NSLQNQALQTFQERLHEADATLKREQESYKQMQSEFAARLNKVEMERQNLAEAITLAERK 399
Query: 153 LQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQ 212
+K + +L Q K +L +ES+ L+ + R + E I +K+
Sbjct: 400 YSDEKKRVDELQQQVKLYKL-------NLESSKQELIDYKQKATRILQSKEKLINSLKEG 452
Query: 213 HG 214
G
Sbjct: 453 SG 454
>gi|157388975 coiled-coil domain containing 99 [Homo sapiens]
Length = 605
Score = 32.3 bits (72), Expect = 0.34
Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 31/224 (13%)
Query: 24 EAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSAFETDIMRNEF---------ERLA 74
EA + L E E R + + L + + + + D RNE E+
Sbjct: 2 EADIITNLRCRLKEAEEERLKAAQYGLQLVESQNELQNQLDKCRNEMMTMTESYEQEKYT 61
Query: 75 ARQPIEL----LSMKRYELPAPSSGQKNDITAWQECVNNSMAQ-LEHQAVRIENLELMSQ 129
++ +EL L E A QK + +E ++ S Q + +IE L++
Sbjct: 62 LQREVELKSRMLESLSCECEAIKQQQKMHLEKLEEQLSRSHGQEVNELKTKIEKLKVELD 121
Query: 130 HGCNAWKVYNENLVHMIEHAQKEL-----QKLRKHIQDLNWQRKNMQLTAGSKLREMESN 184
++ + L H ++H QKEL ++LR + + + L +L EMES
Sbjct: 122 EA----RLSEKQLKHQVDH-QKELLSCKSEELRVMSERVQESMSSEMLALQIELTEMESM 176
Query: 185 WVSLVS-------KNYEIERTIVQLENEIYQIKQQHGEANKENI 221
+L + ++E I L ++ ++K++ E KE +
Sbjct: 177 KTTLKEEVNELQYRQEQLELLITNLMRQVDRLKEEKEEREKEAV 220
>gi|21687020 ecotropic viral integration site 5-like isoform 2 [Homo
sapiens]
Length = 794
Score = 32.0 bits (71), Expect = 0.44
Identities = 39/182 (21%), Positives = 70/182 (38%), Gaps = 51/182 (28%)
Query: 57 DYSAFETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEH 116
+Y+A ++ M + E R LL + L +K +T QE N + + E
Sbjct: 366 EYAAMKSKEMEEQIEIKRLRTENRLLKQRIETL------EKGQVTRAQEAEENYVIKREL 419
Query: 117 QAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAG- 175
VR + C++ A ++LQK + I+ L Q++N +LT
Sbjct: 420 AVVRQQ---------CSS--------------AAEDLQKAQSTIRQLQEQQENPRLTEDF 456
Query: 176 -------------------SKLREMESNWVSLVSKNYEI--ERTIVQLENEIYQIKQQHG 214
LREM+ + + +N + E + QL+ E+ +K + G
Sbjct: 457 VSHLETELEQSRLRETETLGALREMQDKVLDMEKRNSSLPDENNVAQLQEELKALKVREG 516
Query: 215 EA 216
+A
Sbjct: 517 QA 518
>gi|120587023 down-regulated in metastasis [Homo sapiens]
Length = 2785
Score = 32.0 bits (71), Expect = 0.44
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 124 LELMSQHGCNA-----WKVYNENLVHMIEHAQKELQK---LRKHIQDLNWQR 167
+EL+S H WKVY E+L HA+KELQ K + D +W++
Sbjct: 740 IELISSHAHEMENKQFWKVYYEHLEKAATHAEKELQNDMTDEKSVGDESWEQ 791
>gi|89036565 PREDICTED: similar to Temporarily Assigned Gene name
family member (tag-184) [Homo sapiens]
Length = 2785
Score = 32.0 bits (71), Expect = 0.44
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 124 LELMSQHGCNA-----WKVYNENLVHMIEHAQKELQK---LRKHIQDLNWQR 167
+EL+S H WKVY E+L HA+KELQ K + D +W++
Sbjct: 740 IELISSHAHEMENKQFWKVYYEHLEKAATHAEKELQNDMTDEKSVGDESWEQ 791
>gi|20149533 Fc fragment of IgE, low affinity II, receptor for
(CD23A) [Homo sapiens]
Length = 321
Score = 31.6 bits (70), Expect = 0.57
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 103 WQECVNNSMAQLEHQAVR-----IENLELMSQHGCN-AWKVYNENLVHMIEHAQKELQKL 156
W S+ QLE +A R +NLE S HG A K + + +E + E Q+L
Sbjct: 45 WHWDTTQSLKQLEERAARNVSQVSKNLE--SHHGDQMAQKSQSTQISQELEELRAEQQRL 102
Query: 157 RKHIQDLNWQRKNMQLTAGS-KLREM-ESNWVSLVSKNYEIERTIVQLENEI 206
+ +L+W +Q S K +E+ E N S + + E T +++E ++
Sbjct: 103 KSQDLELSWNLNGLQADLSSFKSQELNERNEASDLLERLREEVTKLRMELQV 154
>gi|215982794 myosin VA isoform 2 [Homo sapiens]
Length = 1828
Score = 31.6 bits (70), Expect = 0.57
Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 25/202 (12%)
Query: 28 VREAAAALVEEETRRYRPTKNYLSYLTAPDY--SAFETDIMRNEFERLAARQPIELLSMK 85
+RE A ++++ R + +Y + A Y F + + E ++L IE S++
Sbjct: 861 LREHKAVIIQKRVRGWLARTHYKRSMHAIIYLQCCFRRMMAKRELKKLK----IEARSVE 916
Query: 86 RYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHM 145
RY+ G +N I Q V+ + ++ NLE + + E L
Sbjct: 917 RYK--KLHIGMENKIMQLQRKVDEQNKDYKCLVEKLTNLEGIYNSETEKLRSDLERLQLS 974
Query: 146 IEHA----------QKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLVSKNYEI 195
E A Q+E+ KLRK ++ ++K ++ A +E E LVS N +
Sbjct: 975 EEEAKVATGRVLSLQEEIAKLRKDLEQTRSEKKCIEEHADRYKQETE----QLVS-NLKE 1029
Query: 196 ERTIVQLENEI--YQIKQQHGE 215
E T+++ E E ++I QQ E
Sbjct: 1030 ENTLLKQEKEALNHRIVQQAKE 1051
>gi|215982791 myosin VA isoform 1 [Homo sapiens]
Length = 1855
Score = 31.6 bits (70), Expect = 0.57
Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 25/202 (12%)
Query: 28 VREAAAALVEEETRRYRPTKNYLSYLTAPDY--SAFETDIMRNEFERLAARQPIELLSMK 85
+RE A ++++ R + +Y + A Y F + + E ++L IE S++
Sbjct: 861 LREHKAVIIQKRVRGWLARTHYKRSMHAIIYLQCCFRRMMAKRELKKLK----IEARSVE 916
Query: 86 RYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHM 145
RY+ G +N I Q V+ + ++ NLE + + E L
Sbjct: 917 RYK--KLHIGMENKIMQLQRKVDEQNKDYKCLVEKLTNLEGIYNSETEKLRSDLERLQLS 974
Query: 146 IEHA----------QKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLVSKNYEI 195
E A Q+E+ KLRK ++ ++K ++ A +E E LVS N +
Sbjct: 975 EEEAKVATGRVLSLQEEIAKLRKDLEQTRSEKKCIEEHADRYKQETE----QLVS-NLKE 1029
Query: 196 ERTIVQLENEI--YQIKQQHGE 215
E T+++ E E ++I QQ E
Sbjct: 1030 ENTLLKQEKEALNHRIVQQAKE 1051
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,323,511
Number of Sequences: 37866
Number of extensions: 349059
Number of successful extensions: 1764
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 185
Number of HSP's that attempted gapping in prelim test: 1531
Number of HSP's gapped (non-prelim): 443
length of query: 225
length of database: 18,247,518
effective HSP length: 99
effective length of query: 126
effective length of database: 14,498,784
effective search space: 1826846784
effective search space used: 1826846784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.