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Search of human proteins with 49355765
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
(360 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 716 0.0
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 709 0.0
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 590 e-169
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 590 e-169
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 589 e-168
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 588 e-168
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 582 e-166
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 579 e-165
gi|38201714 ELAV-like 1 [Homo sapiens] 465 e-131
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 117 2e-26
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 110 2e-24
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 110 2e-24
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 110 2e-24
gi|4506447 RNA binding motif, single stranded interacting protei... 110 3e-24
gi|8400718 RNA binding motif, single stranded interacting protei... 110 3e-24
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 106 3e-23
gi|51317355 RNA binding motif, single stranded interacting prote... 105 8e-23
gi|51317353 RNA binding motif, single stranded interacting prote... 105 8e-23
gi|51317351 RNA binding motif, single stranded interacting prote... 105 8e-23
gi|4506449 RNA binding motif, single stranded interacting protei... 104 1e-22
gi|188219593 TIA1 protein isoform 1 [Homo sapiens] 100 2e-21
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens] 100 3e-21
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s... 99 8e-21
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 97 2e-20
gi|188219591 TIA1 protein isoform 2 [Homo sapiens] 96 4e-20
gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens] 96 7e-20
gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Hom... 90 3e-18
gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo... 90 3e-18
gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens] 88 1e-17
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa... 87 2e-17
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 716 bits (1849), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG 60
MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
Sbjct: 1 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG 60
Query: 61 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA 120
SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
Sbjct: 61 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA 120
Query: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
Sbjct: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
Query: 181 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD 240
EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
Sbjct: 181 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD 240
Query: 241 NLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPF 300
NLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPF
Sbjct: 241 NLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPF 300
Query: 301 GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA 360
GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA
Sbjct: 301 GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA 360
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 709 bits (1831), Expect = 0.0
Identities = 360/367 (98%), Positives = 360/367 (98%), Gaps = 7/367 (1%)
Query: 1 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG 60
MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
Sbjct: 1 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG 60
Query: 61 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA 120
SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
Sbjct: 61 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA 120
Query: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
Sbjct: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
Query: 181 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD 240
EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
Sbjct: 181 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD 240
Query: 241 NLLNMAYGVK-------RFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL 293
NLLNMAYGVK RFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL
Sbjct: 241 NLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL 300
Query: 294 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK 353
WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK
Sbjct: 301 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK 360
Query: 354 TSKQHKA 360
TSKQHKA
Sbjct: 361 TSKQHKA 367
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 590 bits (1522), Expect = e-169
Identities = 300/366 (81%), Positives = 319/366 (87%), Gaps = 11/366 (3%)
Query: 4 QILGAMESQVGGGPAGPALPNGPL---------LGTNGATDDSKTNLIVNYLPQNMTQDE 54
QI+ ME QV GP NGP + T TDDSKTNLIVNYLPQNMTQ+E
Sbjct: 6 QIISTMEPQVSNGPTSNT-SNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEE 64
Query: 55 FKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSY 114
F+SLFGSIG+IESCKLVRDKITGQSLGYGFVNY DP DA+KAINTLNGL+LQTKTIKVSY
Sbjct: 65 FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 124
Query: 115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
ARPSSASIRDANLYVSGLPKTM+QKE+EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD
Sbjct: 125 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 184
Query: 175 KRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQT 234
KRIEAEEAIKGLNGQKP GA EPITVKFANNPSQK+ QALL+ LYQS RRY GPLHHQ
Sbjct: 185 KRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQA 244
Query: 235 QRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLW 294
QRFRLDNLLNMAYGVKRFSPI IDGM+ L G+ + G G GWCIFVYNLSP++DESVLW
Sbjct: 245 QRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIP-GHTGTGWCIFVYNLSPDSDESVLW 303
Query: 295 QLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKT 354
QLFGPFGAV NVKVIRDF TNKCKGFGFVTMTNYDEAAMAIASLNGYRLG+RVLQVSFKT
Sbjct: 304 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 363
Query: 355 SKQHKA 360
+K HK+
Sbjct: 364 NKAHKS 369
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 590 bits (1522), Expect = e-169
Identities = 300/366 (81%), Positives = 319/366 (87%), Gaps = 11/366 (3%)
Query: 4 QILGAMESQVGGGPAGPALPNGPL---------LGTNGATDDSKTNLIVNYLPQNMTQDE 54
QI+ ME QV GP NGP + T TDDSKTNLIVNYLPQNMTQ+E
Sbjct: 3 QIISTMEPQVSNGPTSNT-SNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEE 61
Query: 55 FKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSY 114
F+SLFGSIG+IESCKLVRDKITGQSLGYGFVNY DP DA+KAINTLNGL+LQTKTIKVSY
Sbjct: 62 FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 121
Query: 115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
ARPSSASIRDANLYVSGLPKTM+QKE+EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD
Sbjct: 122 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 181
Query: 175 KRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQT 234
KRIEAEEAIKGLNGQKP GA EPITVKFANNPSQK+ QALL+ LYQS RRY GPLHHQ
Sbjct: 182 KRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQA 241
Query: 235 QRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLW 294
QRFRLDNLLNMAYGVKRFSPI IDGM+ L G+ + G G GWCIFVYNLSP++DESVLW
Sbjct: 242 QRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIP-GHTGTGWCIFVYNLSPDSDESVLW 300
Query: 295 QLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKT 354
QLFGPFGAV NVKVIRDF TNKCKGFGFVTMTNYDEAAMAIASLNGYRLG+RVLQVSFKT
Sbjct: 301 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 360
Query: 355 SKQHKA 360
+K HK+
Sbjct: 361 NKAHKS 366
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 589 bits (1518), Expect = e-168
Identities = 299/368 (81%), Positives = 319/368 (86%), Gaps = 11/368 (2%)
Query: 2 VTQILGAMESQVGGGPAGPALPNGPL---------LGTNGATDDSKTNLIVNYLPQNMTQ 52
+ I+ ME QV GP NGP + T TDDSKTNLIVNYLPQNMTQ
Sbjct: 1 MVMIISTMEPQVSNGPTSNT-SNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQ 59
Query: 53 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 112
+EF+SLFGSIG+IESCKLVRDKITGQSLGYGFVNY DP DA+KAINTLNGL+LQTKTIKV
Sbjct: 60 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 119
Query: 113 SYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 172
SYARPSSASIRDANLYVSGLPKTM+QKE+EQLFSQYGRIITSRILVDQVTGVSRGVGFIR
Sbjct: 120 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 179
Query: 173 FDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHH 232
FDKRIEAEEAIKGLNGQKP GA EPITVKFANNPSQK+ QALL+ LYQS RRY GPLHH
Sbjct: 180 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHH 239
Query: 233 QTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESV 292
Q QRFRLDNLLNMAYGVKRFSPI IDGM+ L G+ + G G GWCIFVYNLSP++DESV
Sbjct: 240 QAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIP-GHTGTGWCIFVYNLSPDSDESV 298
Query: 293 LWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSF 352
LWQLFGPFGAV NVKVIRDF TNKCKGFGFVTMTNYDEAAMAIASLNGYRLG+RVLQVSF
Sbjct: 299 LWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 358
Query: 353 KTSKQHKA 360
KT+K HK+
Sbjct: 359 KTNKAHKS 366
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 588 bits (1517), Expect = e-168
Identities = 299/365 (81%), Positives = 318/365 (87%), Gaps = 11/365 (3%)
Query: 5 ILGAMESQVGGGPAGPALPNGPL---------LGTNGATDDSKTNLIVNYLPQNMTQDEF 55
I+ ME QV GP NGP + T TDDSKTNLIVNYLPQNMTQ+EF
Sbjct: 21 IISTMEPQVSNGPTSNT-SNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEF 79
Query: 56 KSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
+SLFGSIG+IESCKLVRDKITGQSLGYGFVNY DP DA+KAINTLNGL+LQTKTIKVSYA
Sbjct: 80 RSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 139
Query: 116 RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 175
RPSSASIRDANLYVSGLPKTM+QKE+EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK
Sbjct: 140 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 199
Query: 176 RIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQ 235
RIEAEEAIKGLNGQKP GA EPITVKFANNPSQK+ QALL+ LYQS RRY GPLHHQ Q
Sbjct: 200 RIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQ 259
Query: 236 RFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQ 295
RFRLDNLLNMAYGVKRFSPI IDGM+ L G+ + G G GWCIFVYNLSP++DESVLWQ
Sbjct: 260 RFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIP-GHTGTGWCIFVYNLSPDSDESVLWQ 318
Query: 296 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTS 355
LFGPFGAV NVKVIRDF TNKCKGFGFVTMTNYDEAAMAIASLNGYRLG+RVLQVSFKT+
Sbjct: 319 LFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 378
Query: 356 KQHKA 360
K HK+
Sbjct: 379 KAHKS 383
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 582 bits (1500), Expect = e-166
Identities = 294/360 (81%), Positives = 316/360 (87%), Gaps = 9/360 (2%)
Query: 9 MESQVGGGPAGPALPNGPLLGTN--------GATDDSKTNLIVNYLPQNMTQDEFKSLFG 60
ME+Q+ GP NGP N G T+DSKTNLIVNYLPQNMTQ+E KSLFG
Sbjct: 1 METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFG 60
Query: 61 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA 120
SIG+IESCKLVRDKITGQSLGYGFVNY DP DA+KAINTLNGL+LQTKTIKVSYARPSSA
Sbjct: 61 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA 120
Query: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
SIRDANLYVSGLPKTM+QKE+EQLFSQYGRIITSRILVDQVTG+SRGVGFIRFDKRIEAE
Sbjct: 121 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
Query: 181 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD 240
EAIKGLNGQKP GA EPITVKFANNPSQKT QA+L+ LYQS RRY GPL Q QRFRLD
Sbjct: 181 EAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLD 240
Query: 241 NLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPF 300
NLLNMAYGVKRFSP+ IDGM+ LAG+ + G G GWCIFVYNL+P+ADES+LWQ+FGPF
Sbjct: 241 NLLNMAYGVKRFSPMTIDGMTSLAGINIP-GHPGTGWCIFVYNLAPDADESILWQMFGPF 299
Query: 301 GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA 360
GAVTNVKVIRDF TNKCKGFGFVTMTNYDEAAMAIASLNGYRLG+RVLQVSFKT+K HKA
Sbjct: 300 GAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA 359
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 579 bits (1493), Expect = e-165
Identities = 299/382 (78%), Positives = 319/382 (83%), Gaps = 25/382 (6%)
Query: 2 VTQILGAMESQVGGGPAGPALPNGPL---------LGTNGATDDSKTNLIVNYLPQNMTQ 52
+ I+ ME QV GP NGP + T TDDSKTNLIVNYLPQNMTQ
Sbjct: 1 MVMIISTMEPQVSNGPTSNT-SNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQ 59
Query: 53 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 112
+EF+SLFGSIG+IESCKLVRDKITGQSLGYGFVNY DP DA+KAINTLNGL+LQTKTIKV
Sbjct: 60 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 119
Query: 113 SYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 172
SYARPSSASIRDANLYVSGLPKTM+QKE+EQLFSQYGRIITSRILVDQVTGVSRGVGFIR
Sbjct: 120 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 179
Query: 173 FDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHH 232
FDKRIEAEEAIKGLNGQKP GA EPITVKFANNPSQK+ QALL+ LYQS RRY GPLHH
Sbjct: 180 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHH 239
Query: 233 QTQRFRLDNLLNMAYGVK--------------RFSPIAIDGMSGLAGVGLSGGAAGAGWC 278
Q QRFRLDNLLNMAYGVK RFSPI IDGM+ L G+ + G G GWC
Sbjct: 240 QAQRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIP-GHTGTGWC 298
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
IFVYNLSP++DESVLWQLFGPFGAV NVKVIRDF TNKCKGFGFVTMTNYDEAAMAIASL
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 339 NGYRLGERVLQVSFKTSKQHKA 360
NGYRLG+RVLQVSFKT+K HK+
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHKS 380
>gi|38201714 ELAV-like 1 [Homo sapiens]
Length = 326
Score = 465 bits (1196), Expect = e-131
Identities = 226/325 (69%), Positives = 268/325 (82%), Gaps = 14/325 (4%)
Query: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
D +TNLIVNYLPQNMTQDE +SLF SIG++ES KL+RDK+ G SLGYGFVNY DA+
Sbjct: 16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Query: 95 KAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
+AINTLNGL+LQ+KTIKVSYARPSS I+DANLY+SGLP+TM+QK++E +FS++GRII S
Sbjct: 76 RAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 135
Query: 155 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQAL 214
R+LVDQ TG+SRGV FIRFDKR EAEEAI NG KP G++EPITVKFA NP+Q AL
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVAL 195
Query: 215 LTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAG 274
L+ LY S ARR+ GP+HHQ QRF RFSP+ +D MSGL+GV + G A+
Sbjct: 196 LSQLYHSPARRFGGPVHHQAQRF-------------RFSPMGVDHMSGLSGVNVPGNAS- 241
Query: 275 AGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMA 334
+GWCIF+YNL +ADE +LWQ+FGPFGAVTNVKVIRDF TNKCKGFGFVTMTNY+EAAMA
Sbjct: 242 SGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMA 301
Query: 335 IASLNGYRLGERVLQVSFKTSKQHK 359
IASLNGYRLG+++LQVSFKT+K HK
Sbjct: 302 IASLNGYRLGDKILQVSFKTNKSHK 326
Score = 55.1 bits (131), Expect = 1e-07
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Query: 115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
A I NL V+ LP+ M+Q E+ LFS G + +++++ D+V G S G GF+ +
Sbjct: 10 AEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYV 69
Query: 175 KRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQT 234
+AE AI LNG + ++ I V +A S+ A +LY S R +
Sbjct: 70 TAKDAERAINTLNGLRL--QSKTIKVSYARPSSEVIKDA---NLYISGLPRTMTQKDVED 124
Query: 235 QRFRLDNLLNMAYGVKRFSPIAIDGMSGLA 264
R ++N S + +D +GL+
Sbjct: 125 MFSRFGRIIN--------SRVLVDQTTGLS 146
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 117 bits (292), Expect = 2e-26
Identities = 87/328 (26%), Positives = 155/328 (47%), Gaps = 61/328 (18%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
N+ + L ++ F + G+I SCK+ D+ S G+GFV++ A +AINT
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINT 157
Query: 100 LNGLKLQTKTIKVSY--------ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRI 151
+NG+ L + + V + A + ++ N+YV LP + ++ ++ LFSQ+G++
Sbjct: 158 MNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKM 217
Query: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTG 211
++ +++ D +G SR GF+ F+K EA++A+ +NG+ + +G
Sbjct: 218 LSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGK------------------EVSG 258
Query: 212 QALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGG 271
+ L YAG + +R N L +RF + D + GV L
Sbjct: 259 RLL-----------YAGRAQKRVER---QNELK-----RRFEQMKQDRLRRYQGVNL--- 296
Query: 272 AAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEA 331
+V NL D+ L + F P+G +T+ KV+ + KGFGFV ++ +EA
Sbjct: 297 --------YVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEA 346
Query: 332 AMAIASLNGYRLGERVLQVSFKTSKQHK 359
A+ +NG +G + L V+ K+ +
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALAQRKEER 374
Score = 81.3 bits (199), Expect = 1e-15
Identities = 44/151 (29%), Positives = 83/151 (54%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
+L V L ++T+ F G I S ++ RD T +SLGY ++N+ P DA++A++T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
+N L+ + I++ +++ P N+++ L ++ K + FS +G I++ ++
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
D+ SRG GF+ F+ A++AI +NG
Sbjct: 132 CDE--HGSRGFGFVHFETHEAAQQAINTMNG 160
Score = 76.6 bits (187), Expect = 3e-14
Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 28/213 (13%)
Query: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
TN+ V LP ++ + + LF G + S K++RD +G S +GFVN+ +A KA+
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVV 249
Query: 99 TLNGLKLQTKTIKVSYA------------------RPSSASIRDANLYVSGLPKTMSQKE 140
+NG ++ + + A + + NLYV L ++ +
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 141 MEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200
+ + FS YG I +++++ + G S+G GF+ F EA +A+ +NG+ + +P+ V
Sbjct: 310 LRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGR--IVGTKPLYV 365
Query: 201 KFANNPSQKTGQALLTHLYQ---SSARRYAGPL 230
A ++ +A+LT+ Y S+ R + PL
Sbjct: 366 ALAQRKEER--KAILTNQYMQRLSTMRTLSNPL 396
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
IF+ NL D L+ F FG + + KV D + +GFGFV ++ A AI ++
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACD--EHGSRGFGFVHFETHEAAQQAINTM 158
Query: 339 NGYRLGERVLQVS-FKTSKQHKA 360
NG L +R + V FK+ ++ +A
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREA 181
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 110 bits (275), Expect = 2e-24
Identities = 83/330 (25%), Positives = 153/330 (46%), Gaps = 65/330 (19%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
N+ + L +++ F + G+I SCK+V D+ S GY FV++ ADKAI
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEK 157
Query: 100 LNGLKLQTKTIKVSYARPSSASIRDA----------NLYVSGLPKTMSQKEMEQLFSQYG 149
+NG+ L + KV R S R+A N+Y+ + + + +++LFSQ+G
Sbjct: 158 MNGMLLNDR--KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 150 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
+ ++ +++ D G S+G GF+ ++K +A +A++ +NG++ G + F +K
Sbjct: 216 KTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISG-----KIIFVGRAQKK 269
Query: 210 TGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLS 269
+ Q+ +R +F + + +S GV L
Sbjct: 270 VER-------QAELKR-------------------------KFEQLKQERISRYQGVNL- 296
Query: 270 GGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 329
++ NL D+ L + F PFG++T+ KV+ + + KGFGFV ++ +
Sbjct: 297 ----------YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPE 344
Query: 330 EAAMAIASLNGYRLGERVLQVSFKTSKQHK 359
EA A+ +NG +G + L V+ K+ +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 85.9 bits (211), Expect = 5e-17
Identities = 45/151 (29%), Positives = 88/151 (58%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
+L V L ++T+ F G + S ++ RD IT +SLGY +VN+ P DA++A++T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
+N ++ K I++ +++ PS N+++ L K++ K + FS +G I++ +++
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
D+ S+G F+ F+ + A++AI+ +NG
Sbjct: 132 CDE--NGSKGYAFVHFETQEAADKAIEKMNG 160
Score = 84.7 bits (208), Expect = 1e-16
Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 28/215 (13%)
Query: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91
GA TN+ + + + + K LF G S K++RD G+S G+GFV+Y
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHE 242
Query: 92 DADKAINTLNGLKLQTKTIKVSYARPS------------------SASIRDANLYVSGLP 133
DA+KA+ +NG ++ K I V A+ + + NLY+ L
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLD 302
Query: 134 KTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
T+ +++ + FS +G I +++++++ G S+G GF+ F EA +A+ +NG+ +
Sbjct: 303 DTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGR--IV 358
Query: 194 AAEPITVKFANNPSQKTGQALLTHLYQSSARRYAG 228
++P+ V A ++ HL +R AG
Sbjct: 359 GSKPLYVALAQRKEERK-----AHLTNQYMQRVAG 388
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+F+ NL D L+ F FG + + KV+ D N KG+ FV + A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 339 NGYRLGERVLQVS-FKTSKQHKA 360
NG L +R + V FK+ K+ +A
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREA 181
Score = 40.0 bits (92), Expect = 0.003
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
++V +L + E++L++ F P G V +++V RD T + G+ +V +A A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 339 N 339
N
Sbjct: 73 N 73
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 110 bits (275), Expect = 2e-24
Identities = 83/330 (25%), Positives = 153/330 (46%), Gaps = 65/330 (19%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
N+ + L +++ F + G+I SCK+V D+ S GY FV++ ADKAI
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEK 157
Query: 100 LNGLKLQTKTIKVSYARPSSASIRDA----------NLYVSGLPKTMSQKEMEQLFSQYG 149
+NG+ L + KV R S R+A N+Y+ + + + +++LFSQ+G
Sbjct: 158 MNGMLLNDR--KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 150 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
+ ++ +++ D G S+G GF+ ++K +A +A++ +NG++ G + F +K
Sbjct: 216 KTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISG-----KIIFVGRAQKK 269
Query: 210 TGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLS 269
+ Q+ +R +F + + +S GV L
Sbjct: 270 VER-------QAELKR-------------------------KFEQLKQERISRYQGVNL- 296
Query: 270 GGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 329
++ NL D+ L + F PFG++T+ KV+ + + KGFGFV ++ +
Sbjct: 297 ----------YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPE 344
Query: 330 EAAMAIASLNGYRLGERVLQVSFKTSKQHK 359
EA A+ +NG +G + L V+ K+ +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 85.9 bits (211), Expect = 5e-17
Identities = 45/151 (29%), Positives = 88/151 (58%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
+L V L ++T+ F G + S ++ RD IT +SLGY +VN+ P DA++A++T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
+N ++ K I++ +++ PS N+++ L K++ K + FS +G I++ +++
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
D+ S+G F+ F+ + A++AI+ +NG
Sbjct: 132 CDE--NGSKGYAFVHFETQEAADKAIEKMNG 160
Score = 84.7 bits (208), Expect = 1e-16
Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 28/215 (13%)
Query: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91
GA TN+ + + + + K LF G S K++RD G+S G+GFV+Y
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHE 242
Query: 92 DADKAINTLNGLKLQTKTIKVSYARPS------------------SASIRDANLYVSGLP 133
DA+KA+ +NG ++ K I V A+ + + NLY+ L
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLD 302
Query: 134 KTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
T+ +++ + FS +G I +++++++ G S+G GF+ F EA +A+ +NG+ +
Sbjct: 303 DTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGR--IV 358
Query: 194 AAEPITVKFANNPSQKTGQALLTHLYQSSARRYAG 228
++P+ V A ++ HL +R AG
Sbjct: 359 GSKPLYVALAQRKEERK-----AHLTNQYMQRVAG 388
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+F+ NL D L+ F FG + + KV+ D N KG+ FV + A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 339 NGYRLGERVLQVS-FKTSKQHKA 360
NG L +R + V FK+ K+ +A
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREA 181
Score = 40.0 bits (92), Expect = 0.003
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
++V +L + E++L++ F P G V +++V RD T + G+ +V +A A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 339 N 339
N
Sbjct: 73 N 73
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 110 bits (275), Expect = 2e-24
Identities = 83/330 (25%), Positives = 153/330 (46%), Gaps = 65/330 (19%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
N+ + L +++ F + G+I SCK+V D+ S GY FV++ ADKAI
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEK 157
Query: 100 LNGLKLQTKTIKVSYARPSSASIRDA----------NLYVSGLPKTMSQKEMEQLFSQYG 149
+NG+ L + KV R S R+A N+Y+ + + + +++LFSQ+G
Sbjct: 158 MNGMLLNDR--KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFG 215
Query: 150 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
+ ++ +++ D G S+G GF+ ++K +A +A++ +NG++ G + F +K
Sbjct: 216 KTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISG-----KIIFVGRAQKK 269
Query: 210 TGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLS 269
+ Q+ +R +F + + +S GV L
Sbjct: 270 VER-------QAELKR-------------------------KFEQLKQERISRYQGVNL- 296
Query: 270 GGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 329
++ NL D+ L + F PFG++T+ KV+ + + KGFGFV ++ +
Sbjct: 297 ----------YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPE 344
Query: 330 EAAMAIASLNGYRLGERVLQVSFKTSKQHK 359
EA A+ +NG +G + L V+ K+ +
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Score = 85.9 bits (211), Expect = 5e-17
Identities = 45/151 (29%), Positives = 88/151 (58%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
+L V L ++T+ F G + S ++ RD IT +SLGY +VN+ P DA++A++T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
+N ++ K I++ +++ PS N+++ L K++ K + FS +G I++ +++
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
D+ S+G F+ F+ + A++AI+ +NG
Sbjct: 132 CDE--NGSKGYAFVHFETQEAADKAIEKMNG 160
Score = 84.7 bits (208), Expect = 1e-16
Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 28/215 (13%)
Query: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91
GA TN+ + + + + K LF G S K++RD G+S G+GFV+Y
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHE 242
Query: 92 DADKAINTLNGLKLQTKTIKVSYARPS------------------SASIRDANLYVSGLP 133
DA+KA+ +NG ++ K I V A+ + + NLY+ L
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLD 302
Query: 134 KTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
T+ +++ + FS +G I +++++++ G S+G GF+ F EA +A+ +NG+ +
Sbjct: 303 DTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGR--IV 358
Query: 194 AAEPITVKFANNPSQKTGQALLTHLYQSSARRYAG 228
++P+ V A ++ HL +R AG
Sbjct: 359 GSKPLYVALAQRKEERK-----AHLTNQYMQRVAG 388
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+F+ NL D L+ F FG + + KV+ D N KG+ FV + A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 339 NGYRLGERVLQVS-FKTSKQHKA 360
NG L +R + V FK+ K+ +A
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREA 181
Score = 40.0 bits (92), Expect = 0.003
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
++V +L + E++L++ F P G V +++V RD T + G+ +V +A A+ ++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 339 N 339
N
Sbjct: 73 N 73
>gi|4506447 RNA binding motif, single stranded interacting protein 1
isoform c [Homo sapiens]
Length = 403
Score = 110 bits (274), Expect = 3e-24
Identities = 73/219 (33%), Positives = 108/219 (49%), Gaps = 21/219 (9%)
Query: 4 QILGAMESQVGGGPAGPALPNGPLLGTNGATDD-------SKTNLIVNYLPQNMTQDEFK 56
Q L A +S V P P P+ N ++ SKTNL + LP + T +
Sbjct: 20 QYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLV 79
Query: 57 SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR 116
L G I S K + DK T + GYGFV++ P A KA++ L +Q + K
Sbjct: 80 KLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQD 139
Query: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
P+ NLY+S LP +M ++E+E + +G++I++RIL D +G SRGVGF R +
Sbjct: 140 PT-------NLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMEST 191
Query: 177 IEAEEAIKGLNG---QKPLGAA---EPITVKFANNPSQK 209
+ E I NG + P G + EP+ KFA+ +K
Sbjct: 192 EKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKK 230
Score = 50.4 bits (119), Expect = 2e-06
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 254 PIAIDGMSGLAGVGLSGGAAGAGWC------IFVYNLSPEADESVLWQLFGPFGAVTNVK 307
P+A S + S ++ +GW +++ L P + L +L P+G + + K
Sbjct: 33 PMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTK 92
Query: 308 VIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
I D TTNKCKG+GFV + A A+++L
Sbjct: 93 AILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 123
Score = 37.7 bits (86), Expect = 0.016
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+++ NL DE L + PFG V + +++RD ++ +G GF M + ++ I
Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIGHF 201
Query: 339 NG 340
NG
Sbjct: 202 NG 203
>gi|8400718 RNA binding motif, single stranded interacting protein 1
isoform a [Homo sapiens]
Length = 406
Score = 110 bits (274), Expect = 3e-24
Identities = 73/219 (33%), Positives = 108/219 (49%), Gaps = 21/219 (9%)
Query: 4 QILGAMESQVGGGPAGPALPNGPLLGTNGATDD-------SKTNLIVNYLPQNMTQDEFK 56
Q L A +S V P P P+ N ++ SKTNL + LP + T +
Sbjct: 20 QYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLV 79
Query: 57 SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR 116
L G I S K + DK T + GYGFV++ P A KA++ L +Q + K
Sbjct: 80 KLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQD 139
Query: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
P+ NLY+S LP +M ++E+E + +G++I++RIL D +G SRGVGF R +
Sbjct: 140 PT-------NLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMEST 191
Query: 177 IEAEEAIKGLNG---QKPLGAA---EPITVKFANNPSQK 209
+ E I NG + P G + EP+ KFA+ +K
Sbjct: 192 EKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKK 230
Score = 50.4 bits (119), Expect = 2e-06
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 254 PIAIDGMSGLAGVGLSGGAAGAGWC------IFVYNLSPEADESVLWQLFGPFGAVTNVK 307
P+A S + S ++ +GW +++ L P + L +L P+G + + K
Sbjct: 33 PMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTK 92
Query: 308 VIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
I D TTNKCKG+GFV + A A+++L
Sbjct: 93 AILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 123
Score = 37.7 bits (86), Expect = 0.016
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+++ NL DE L + PFG V + +++RD ++ +G GF M + ++ I
Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIGHF 201
Query: 339 NG 340
NG
Sbjct: 202 NG 203
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 106 bits (265), Expect = 3e-23
Identities = 82/330 (24%), Positives = 152/330 (46%), Gaps = 65/330 (19%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
N+ + L +++ F + G+I SCK+V D+ S GYGFV++ A++AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157
Query: 100 LNGLKLQTKTIKVSYARPSSASIRDA----------NLYVSGLPKTMSQKEMEQLFSQYG 149
+NG+ L + KV R S R+A N+Y+ + M + ++ LF ++G
Sbjct: 158 MNGMLLNDR--KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 215
Query: 150 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
++ +++ D+ +G S+G GF+ F++ +A++A+ +NG++ G
Sbjct: 216 PALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNG---------------- 258
Query: 210 TGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLS 269
+Y A++ + QT+ R +F + D ++ GV L
Sbjct: 259 ------KQIYVGRAQK---KVERQTELKR------------KFEQMKQDRITRYQGVNL- 296
Query: 270 GGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 329
+V NL D+ L + F PFG +T+ KV+ + + KGFGFV ++ +
Sbjct: 297 ----------YVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPE 344
Query: 330 EAAMAIASLNGYRLGERVLQVSFKTSKQHK 359
EA A+ +NG + + L V+ K+ +
Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 89.0 bits (219), Expect = 6e-18
Identities = 47/151 (31%), Positives = 88/151 (58%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
+L V L ++T+ F G I S ++ RD IT +SLGY +VN+ P DA++A++T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
+N ++ K +++ +++ PS N+++ L K++ K + FS +G I++ +++
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
D+ S+G GF+ F+ + AE AI+ +NG
Sbjct: 132 CDE--NGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 85.9 bits (211), Expect = 5e-17
Identities = 62/220 (28%), Positives = 107/220 (48%), Gaps = 28/220 (12%)
Query: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91
GA TN+ + ++M + K LFG G S K++ D+ +G+S G+GFV++
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHE 242
Query: 92 DADKAINTLNGLKLQTKTIKVSYARPS------------------SASIRDANLYVSGLP 133
DA KA++ +NG +L K I V A+ + NLYV L
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 134 KTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
+ + + + FS +G I +++++++ G S+G GF+ F EA +A+ +NG+ +
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR--IV 358
Query: 194 AAEPITVKFANNPSQKTGQALLTHLY---QSSARRYAGPL 230
A +P+ V A ++ QA LT+ Y +S R P+
Sbjct: 359 ATKPLYVALAQRKEER--QAHLTNQYMQRMASVRAVPNPV 396
Score = 67.8 bits (164), Expect = 1e-11
Identities = 66/264 (25%), Positives = 120/264 (45%), Gaps = 33/264 (12%)
Query: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
PS+ S A+LYV L +++ + + FS G I++ R+ D +T S G ++ F +
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 177 IEAEEAIKGLNGQKPLGAAEPITVKFA-NNPSQK---TGQALLTHLYQSSARR-----YA 227
+AE A+ +N G +P+ + ++ +PS + G + +L +S + ++
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
Query: 228 GPLHHQTQRFRLDNLLNMAYGVKRF-----SPIAIDGMSGL------AGVGL-------- 268
+ + + D + YG F + AI+ M+G+ VG
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 269 --SGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMT 326
G A +++ N + D+ L LFG FG +VKV+ D + K KGFGFV+
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFE 239
Query: 327 NYDEAAMAIASLNGYRLGERVLQV 350
+++A A+ +NG L + + V
Sbjct: 240 RHEDAQKAVDEMNGKELNGKQIYV 263
Score = 50.8 bits (120), Expect = 2e-06
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
IF+ NL D L+ F FG + + KV+ D N KG+GFV + A AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKM 158
Query: 339 NGYRLGERVLQVS-FKTSKQHKA 360
NG L +R + V FK+ K+ +A
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREA 181
>gi|51317355 RNA binding motif, single stranded interacting protein
3 isoform 1 [Homo sapiens]
Length = 437
Score = 105 bits (261), Expect = 8e-23
Identities = 69/201 (34%), Positives = 103/201 (51%), Gaps = 16/201 (7%)
Query: 17 PAGPALPNGPLLGTNGATDD--SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
P P+ + +N ++ + SKTNL + LP T + L G I S K + DK
Sbjct: 37 PPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 96
Query: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPK 134
T Q GYGFV++ P A KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 135 TMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG---QKP 191
+M ++E+E + +G +I++RIL D GVSRGVGF R + + E I+ NG + P
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTP 208
Query: 192 LG---AAEPITVKFANNPSQK 209
G +EP+ KFA+ +K
Sbjct: 209 PGIPAPSEPLLCKFADGGQKK 229
Score = 46.2 bits (108), Expect = 5e-05
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+++ L P + L +L P+G + + K I D TN+CKG+GFV + A A+ASL
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 122
Score = 36.6 bits (83), Expect = 0.036
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+++ NL DE L + PFG V + +++RD +G GF M + ++ + I
Sbjct: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHF 200
Query: 339 NG 340
NG
Sbjct: 201 NG 202
>gi|51317353 RNA binding motif, single stranded interacting protein
3 isoform 3 [Homo sapiens]
Length = 419
Score = 105 bits (261), Expect = 8e-23
Identities = 69/201 (34%), Positives = 103/201 (51%), Gaps = 16/201 (7%)
Query: 17 PAGPALPNGPLLGTNGATDD--SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
P P+ + +N ++ + SKTNL + LP T + L G I S K + DK
Sbjct: 36 PPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 95
Query: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPK 134
T Q GYGFV++ P A KA+ +L +Q + K P+ NLY+S LP
Sbjct: 96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 148
Query: 135 TMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG---QKP 191
+M ++E+E + +G +I++RIL D GVSRGVGF R + + E I+ NG + P
Sbjct: 149 SMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTP 207
Query: 192 LG---AAEPITVKFANNPSQK 209
G +EP+ KFA+ +K
Sbjct: 208 PGIPAPSEPLLCKFADGGQKK 228
Score = 46.2 bits (108), Expect = 5e-05
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+++ L P + L +L P+G + + K I D TN+CKG+GFV + A A+ASL
Sbjct: 62 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 121
Score = 36.6 bits (83), Expect = 0.036
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+++ NL DE L + PFG V + +++RD +G GF M + ++ + I
Sbjct: 141 LYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHF 199
Query: 339 NG 340
NG
Sbjct: 200 NG 201
>gi|51317351 RNA binding motif, single stranded interacting protein
3 isoform 2 [Homo sapiens]
Length = 420
Score = 105 bits (261), Expect = 8e-23
Identities = 69/201 (34%), Positives = 103/201 (51%), Gaps = 16/201 (7%)
Query: 17 PAGPALPNGPLLGTNGATDD--SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
P P+ + +N ++ + SKTNL + LP T + L G I S K + DK
Sbjct: 37 PPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 96
Query: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPK 134
T Q GYGFV++ P A KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 135 TMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG---QKP 191
+M ++E+E + +G +I++RIL D GVSRGVGF R + + E I+ NG + P
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTP 208
Query: 192 LG---AAEPITVKFANNPSQK 209
G +EP+ KFA+ +K
Sbjct: 209 PGIPAPSEPLLCKFADGGQKK 229
Score = 46.2 bits (108), Expect = 5e-05
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+++ L P + L +L P+G + + K I D TN+CKG+GFV + A A+ASL
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 122
Score = 36.6 bits (83), Expect = 0.036
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+++ NL DE L + PFG V + +++RD +G GF M + ++ + I
Sbjct: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHF 200
Query: 339 NG 340
NG
Sbjct: 201 NG 202
>gi|4506449 RNA binding motif, single stranded interacting protein 2
[Homo sapiens]
Length = 407
Score = 104 bits (259), Expect = 1e-22
Identities = 65/187 (34%), Positives = 97/187 (51%), Gaps = 14/187 (7%)
Query: 29 GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
G+NG SKTNL + L T + L G I S K + DK T + GYGFV++
Sbjct: 46 GSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFD 105
Query: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
P+ A KA+ L +Q + K P+ NLY+S LP +M ++E+E + +
Sbjct: 106 SPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQELEGMLKPF 158
Query: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG---QKPLGA---AEPITVKF 202
G++I++RIL D +G SRGVGF R + + E I NG + P G ++P+ KF
Sbjct: 159 GQVISTRILRD-TSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKF 217
Query: 203 ANNPSQK 209
A+ +K
Sbjct: 218 ADGGPKK 224
Score = 48.1 bits (113), Expect = 1e-05
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+++ L P + L +L P+G + + K I D TTNKCKG+GFV + A A+ +L
Sbjct: 58 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 117
Score = 38.1 bits (87), Expect = 0.012
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+++ NL DE L + PFG V + +++RD T+ +G GF M + ++ I
Sbjct: 137 LYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGTSRGVGFARMESTEKCEAIITHF 195
Query: 339 NG 340
NG
Sbjct: 196 NG 197
>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
Length = 375
Score = 100 bits (249), Expect = 2e-21
Identities = 81/319 (25%), Positives = 144/319 (45%), Gaps = 56/319 (17%)
Query: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
D+ L V L +++T+ LF IG ++CK++ D T + Y FV + + A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 95 KAINTLNGLKLQTKTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLFSQYGR 150
A+ +NG K+ K +KV++A S+ +D + ++V L ++ ++++ F+ +GR
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR 120
Query: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT 210
I +R++ D TG S+G GF+ F + +AE AI+ + GQ G P+ K+
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 180
Query: 211 GQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSG 270
Y+S+ T++ D ++N + SP G GL+
Sbjct: 181 -------TYESN-----------TKQLSYDEVVNQS------SPSNCTVYCGGVTSGLT- 215
Query: 271 GAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDE 330
E ++ Q F PFG + ++V D KG+ FV +++
Sbjct: 216 -------------------EQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHES 250
Query: 331 AAMAIASLNGYRLGERVLQ 349
AA AI S+NG + V++
Sbjct: 251 AAHAIVSVNGTTIEGHVVK 269
Score = 60.1 bits (144), Expect = 3e-09
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+FV +LSPE + F PFG +++ +V++D T K KG+GFV+ N +A AI +
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 339 NGYRLGERVLQVSFKTSK 356
G LG R ++ ++ T K
Sbjct: 157 GGQWLGGRQIRTNWATRK 174
Score = 42.4 bits (98), Expect = 7e-04
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
++V NLS + E+++ QLF G N K+I D N + FV + AA A+A++
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAM 66
Query: 339 NGYRLGERVLQVSFKTS 355
NG ++ + ++V++ T+
Sbjct: 67 NGRKIMGKEVKVNWATT 83
Score = 30.0 bits (66), Expect = 3.4
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKT 109
+T+ + F G I ++ DK GY FV ++ A AI ++NG ++
Sbjct: 214 LTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSVNGTTIEGHV 267
Query: 110 IKVSYAR 116
+K + +
Sbjct: 268 VKCYWGK 274
>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
Length = 375
Score = 100 bits (248), Expect = 3e-21
Identities = 77/319 (24%), Positives = 143/319 (44%), Gaps = 56/319 (17%)
Query: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
D L V L +++T+ LF IG +SCK++ + + Y FV + + DA
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAA 62
Query: 95 KAINTLNGLKLQTKTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLFSQYGR 150
A+ +NG K+ K +KV++A S+ +D + ++V L ++ ++++ F+ +G+
Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGK 122
Query: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT 210
I +R++ D TG S+G GF+ F +++AE AI + GQ G P+ K+
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 182
Query: 211 GQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSG 270
Q + T++ R ++++N + SP G GL+
Sbjct: 183 TQ------------------ENNTKQLRFEDVVNQS------SPKNCTVYCGGIASGLT- 217
Query: 271 GAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDE 330
+ ++ Q F PFG + ++V + KG+ FV + ++
Sbjct: 218 -------------------DQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHES 252
Query: 331 AAMAIASLNGYRLGERVLQ 349
AA AI S+NG + V++
Sbjct: 253 AAHAIVSVNGTTIEGHVVK 271
Score = 60.5 bits (145), Expect = 2e-09
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+FV +LSPE + F PFG +++ +V++D T K KG+GFV+ N +A AI +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 339 NGYRLGERVLQVSFKTSK 356
G LG R ++ ++ T K
Sbjct: 159 GGQWLGGRQIRTNWATRK 176
Score = 41.6 bits (96), Expect = 0.001
Identities = 23/77 (29%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
++V NLS + E ++ QLF G + K+I + T+N + FV + +AA A+A++
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAALAAM 68
Query: 339 NGYRLGERVLQVSFKTS 355
NG ++ + ++V++ T+
Sbjct: 69 NGRKILGKEVKVNWATT 85
Score = 30.0 bits (66), Expect = 3.4
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105
+ +T + F G I ++ +K GY FV +S A AI ++NG +
Sbjct: 212 IASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTI 265
Query: 106 QTKTIKVSYARPS 118
+ +K + + S
Sbjct: 266 EGHVVKCYWGKES 278
>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
sapiens]
Length = 370
Score = 98.6 bits (244), Expect = 8e-21
Identities = 76/322 (23%), Positives = 145/322 (45%), Gaps = 63/322 (19%)
Query: 31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90
N A +L V L ++T+D F ++G + S ++ RD++T +SLGY +VN+
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 91 NDADKAINTLNGLKLQTKTIKVSYARPSSASIRD--ANLYVSGLPKTMSQKEMEQLFSQY 148
DA KA++T+N ++ K+I++ +++ + R N+++ L K++ K + + FS +
Sbjct: 62 ADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAF 121
Query: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQ 208
G+I++S+++ D S+G F+ F + A+ AI+ +NG K L + +F N
Sbjct: 122 GKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNG-KLLKGCKVFVGRFKN---- 174
Query: 209 KTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGL 268
R D + F+ + I G
Sbjct: 175 -----------------------------RKDREAELRSKASEFTNVYIKNFGG------ 199
Query: 269 SGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNY 328
+ D+ L +F +G +VKV+ D ++ K KGFGFV+ ++
Sbjct: 200 ------------------DMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSH 240
Query: 329 DEAAMAIASLNGYRLGERVLQV 350
+ A A+ +NG + +++ V
Sbjct: 241 EAAKKAVEEMNGRDINGQLIFV 262
Score = 92.8 bits (229), Expect = 4e-19
Identities = 79/322 (24%), Positives = 141/322 (43%), Gaps = 65/322 (20%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
N+ + L +++ F + G I S K++ D S GY FV++ + + AD+AI
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDD--QGSKGYAFVHFQNQSAADRAIEE 156
Query: 100 LNGLKLQTKTIKVSYARPSSASIRDA----------NLYVSGLPKTMSQKEMEQLFSQYG 149
+NG L K KV R + R+A N+Y+ M + ++ +FS+YG
Sbjct: 157 MNGKLL--KGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYG 214
Query: 150 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
+ ++ +++ D +G S+G GF+ FD A++A++ +NG+
Sbjct: 215 KTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGR------------------DI 255
Query: 210 TGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLS 269
GQ + Q R A L M +KR + + G GV L
Sbjct: 256 NGQLIFVGRAQKKVERQA-------------ELKQMFEQLKR------ERIRGCQGVKL- 295
Query: 270 GGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 329
++ NL D+ L F FG+++ VKV+++ + KGFG + ++ +
Sbjct: 296 ----------YIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE--EGQSKGFGLICFSSPE 343
Query: 330 EAAMAIASLNGYRLGERVLQVS 351
+A A+ +NG LG + L ++
Sbjct: 344 DATKAMTEMNGRILGSKPLSIA 365
Score = 67.0 bits (162), Expect = 2e-11
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 25/179 (13%)
Query: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
TN+ + +M + K +F G S K++ D +G+S G+GFV++ A KA+
Sbjct: 190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVE 248
Query: 99 TLNGLKLQTKTIKVSYA------------------RPSSASIRDANLYVSGLPKTMSQKE 140
+NG + + I V A R + LY+ L T+ ++
Sbjct: 249 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 308
Query: 141 MEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ----KPLGAA 195
+ FS +G I SR+ V Q G S+G G I F +A +A+ +NG+ KPL A
Sbjct: 309 LRNEFSSFGSI--SRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIA 365
Score = 47.8 bits (112), Expect = 2e-05
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
L + L + ++ ++ F S G I K+++++ GQS G+G + +S P DA KA+ +
Sbjct: 295 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEM 352
Query: 101 NGLKLQTKTIKVSYAR 116
NG L +K + ++ A+
Sbjct: 353 NGRILGSKPLSIALAQ 368
Score = 43.5 bits (101), Expect = 3e-04
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+F+ NL D L++ F FG + + KV+ D KG+ FV N A AI +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 339 NGYRL-GERVLQVSFKTSKQHKA 360
NG L G +V FK K +A
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREA 180
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 97.4 bits (241), Expect = 2e-20
Identities = 78/328 (23%), Positives = 147/328 (44%), Gaps = 61/328 (18%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
N+ V L +++ + G+I SC +V D+ S GYGFV++ A++AI
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKK 157
Query: 100 LNGLKL--------QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRI 151
+NG+ L Q K+ K A + + N+Y+ + M + ++ LF ++G
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTG 211
++ +++ D+ +G S+G GF+ F++ +A++A+ +NG++ G
Sbjct: 218 LSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNG------------------ 258
Query: 212 QALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGG 271
+Y A++ + QT+ R F + D ++ V L
Sbjct: 259 ----KQIYVGRAQK---KVERQTELKR------------TFEQMKQDRITRYQVVNL--- 296
Query: 272 AAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEA 331
+V NL D+ L + F PFG +T+ KV+ + + KGFGFV ++ +EA
Sbjct: 297 --------YVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEA 346
Query: 332 AMAIASLNGYRLGERVLQVSFKTSKQHK 359
A+ +NG + + L V+ K+ +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRKEER 374
Score = 83.6 bits (205), Expect = 3e-16
Identities = 58/206 (28%), Positives = 101/206 (49%), Gaps = 25/206 (12%)
Query: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91
GA N+ + ++M + K LFG G S K++ D+ +G+S G+GFV++
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHE 242
Query: 92 DADKAINTLNGLKLQTKTIKVSYARPS------------------SASIRDANLYVSGLP 133
DA KA++ +NG +L K I V A+ + NLYV L
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLD 302
Query: 134 KTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
+ + + + FS +G I +++++++ G S+G GF+ F EA +A+ +NG+ +
Sbjct: 303 DGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR--IV 358
Query: 194 AAEPITVKFANNPSQKTGQALLTHLY 219
A +P+ V A ++ QA LT+ Y
Sbjct: 359 ATKPLYVALAQRKEER--QAYLTNEY 382
Score = 78.6 bits (192), Expect = 8e-15
Identities = 45/151 (29%), Positives = 81/151 (53%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
+L V L ++T+ F G I S ++ RD IT S Y +VN+ DA+ A++T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
+N ++ K +++ +++ PS N++V L K+++ K + S +G I++ ++
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVV 131
Query: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
D+ S+G GF+ F+ AE AIK +NG
Sbjct: 132 CDE--NGSKGYGFVHFETHEAAERAIKKMNG 160
Score = 66.2 bits (160), Expect = 4e-11
Identities = 65/267 (24%), Positives = 115/267 (43%), Gaps = 39/267 (14%)
Query: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
PS+ S A+LYV L +++ + + FS G I++ RI D +T S ++ F
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 177 IEAEEAIKGLNGQKPLGAAEPITVKFA-NNPSQK---TGQALLTHLYQSSARRYAGPLHH 232
+AE A+ +N G +P+ + ++ +PS + G + +L +S + L+
Sbjct: 63 KDAEHALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNK---ALYD 117
Query: 233 QTQRFR--------LDNLLNMAYG-------------VKRFSPIAIDGMSGLAGVGLS-- 269
F D + YG +K+ + + ++G G S
Sbjct: 118 TVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK 177
Query: 270 ------GGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 323
G A +++ N + D+ L LFG FG +VKV+ D + K KGFGFV
Sbjct: 178 EREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFV 236
Query: 324 TMTNYDEAAMAIASLNGYRLGERVLQV 350
+ +++A A+ +NG L + + V
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 45.8 bits (107), Expect = 6e-05
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
IFV NL + L+ FG + + V+ D N KG+GFV ++ A AI +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKM 158
Query: 339 NGYRL-GERVLQVSFKTSKQHKA 360
NG L G +V FK+ K+ +A
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREA 181
>gi|188219591 TIA1 protein isoform 2 [Homo sapiens]
Length = 386
Score = 96.3 bits (238), Expect = 4e-20
Identities = 81/330 (24%), Positives = 144/330 (43%), Gaps = 67/330 (20%)
Query: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
D+ L V L +++T+ LF IG ++CK++ D T + Y FV + + A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 95 KAINTLNGLKLQTKTIKVSYARPSSASIRDAN---------------LYVSGLPKTMSQK 139
A+ +NG K+ K +KV++A S+ +D + ++V L ++ +
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 140 EMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPIT 199
+++ F+ +GRI +R++ D TG S+G GF+ F + +AE AI+ + GQ G
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 200 VKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDG 259
P+ K+ Y+S+ T++ D ++N + SP
Sbjct: 181 WATRKPPAPKS-------TYESN-----------TKQLSYDEVVNQS------SPSNCTV 216
Query: 260 MSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKG 319
G GL+ E ++ Q F PFG + ++V D KG
Sbjct: 217 YCGGVTSGLT--------------------EQLMRQTFSPFGQIMEIRVFPD------KG 250
Query: 320 FGFVTMTNYDEAAMAIASLNGYRLGERVLQ 349
+ FV +++ AA AI S+NG + V++
Sbjct: 251 YSFVRFNSHESAAHAIVSVNGTTIEGHVVK 280
Score = 68.2 bits (165), Expect = 1e-11
Identities = 59/231 (25%), Positives = 98/231 (42%), Gaps = 55/231 (23%)
Query: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
LYV L + +++ + QLFSQ G ++++D T + F+ F + A A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 187 NGQKPLGAAEPITVKFANNP-SQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNM 245
NG+K +G + + V +A P SQK + T + S +R H
Sbjct: 67 NGRKIMG--KEVKVNWATTPSSQKKDTSSSTVV---STQRSQDHFH-------------- 107
Query: 246 AYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTN 305
+FV +LSPE + F PFG +++
Sbjct: 108 ---------------------------------VFVGDLSPEITTEDIKAAFAPFGRISD 134
Query: 306 VKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 356
+V++D T K KG+GFV+ N +A AI + G LG R ++ ++ T K
Sbjct: 135 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Score = 30.0 bits (66), Expect = 3.4
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKT 109
+T+ + F G I ++ DK GY FV ++ A AI ++NG ++
Sbjct: 225 LTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSVNGTTIEGHV 278
Query: 110 IKVSYAR 116
+K + +
Sbjct: 279 VKCYWGK 285
>gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]
Length = 392
Score = 95.5 bits (236), Expect = 7e-20
Identities = 79/334 (23%), Positives = 146/334 (43%), Gaps = 69/334 (20%)
Query: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRD----KITGQSLG--------- 81
D L V L +++T+ LF IG +SCK++ + + S+G
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSN 64
Query: 82 --YGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDAN----LYVSGLPKT 135
Y FV + + DA A+ +NG K+ K +KV++A S+ +D + ++V L
Sbjct: 65 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Query: 136 MSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAA 195
++ ++++ F+ +G+I +R++ D TG S+G GF+ F +++AE AI + GQ G
Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 196 EPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPI 255
P+ K+ Q + T++ R ++++N + SP
Sbjct: 185 IRTNWATRKPPAPKSTQ------------------ENNTKQLRFEDVVNQS------SPK 220
Query: 256 AIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTN 315
G GL+ + ++ Q F PFG + ++V +
Sbjct: 221 NCTVYCGGIASGLT--------------------DQLMRQTFSPFGQIMEIRVFPE---- 256
Query: 316 KCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 349
KG+ FV + ++ AA AI S+NG + V++
Sbjct: 257 --KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
Score = 60.5 bits (145), Expect = 2e-09
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+FV +LSPE + F PFG +++ +V++D T K KG+GFV+ N +A AI +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 339 NGYRLGERVLQVSFKTSK 356
G LG R ++ ++ T K
Sbjct: 176 GGQWLGGRQIRTNWATRK 193
Score = 33.5 bits (75), Expect = 0.30
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRD----FTTNKCKGFG-----------FV 323
++V NLS + E ++ QLF G + K+I + N GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 324 TMTNYDEAAMAIASLNGYRLGERVLQVSFKTS 355
+ +AA A+A++NG ++ + ++V++ T+
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATT 102
Score = 30.0 bits (66), Expect = 3.4
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105
+ +T + F G I ++ +K GY FV +S A AI ++NG +
Sbjct: 229 IASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTI 282
Query: 106 QTKTIKVSYARPS 118
+ +K + + S
Sbjct: 283 EGHVVKCYWGKES 295
>gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Homo
sapiens]
Length = 200
Score = 90.1 bits (222), Expect = 3e-18
Identities = 50/151 (33%), Positives = 84/151 (55%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
+L V L +T+ F G I S ++ RDKIT +SLGY +VNY P DA +A+ T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
LN ++ + +++ +++ PS N+++ L KT+ K + +FS +G I++ ++
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
D+ +G GF+ F K+ AE AI +NG
Sbjct: 123 CDEKG--PKGYGFVHFQKQESAERAIDVMNG 151
Score = 44.3 bits (103), Expect = 2e-04
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+F+ NL D L+ +F FG + + KV D KG+GFV + A AI +
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQKQESAERAIDVM 149
Query: 339 NGYRLGERVLQVS-FKTSKQHKA 360
NG L R + V FK+ K+ +A
Sbjct: 150 NGMFLNYRKIFVGRFKSHKEREA 172
Score = 42.7 bits (99), Expect = 5e-04
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
++V +L PE E++L++ F P G + ++++ RD T + G+ +V +A A+ +L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 339 N 339
N
Sbjct: 64 N 64
Score = 42.4 bits (98), Expect = 7e-04
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
N+ + L + + ++F + G+I SCK+ D+ + GYGFV++ A++AI+
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDV 148
Query: 100 LNGLKLQTKTIKV 112
+NG+ L + I V
Sbjct: 149 MNGMFLNYRKIFV 161
>gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo
sapiens]
Length = 200
Score = 90.1 bits (222), Expect = 3e-18
Identities = 50/151 (33%), Positives = 84/151 (55%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
+L V L +T+ F G I S ++ RDKIT +SLGY +VNY P DA +A+ T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
LN ++ + +++ +++ PS N+++ L KT+ K + +FS +G I++ ++
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
D+ +G GF+ F K+ AE AI +NG
Sbjct: 123 CDEKG--PKGYGFVHFQKQESAERAIDVMNG 151
Score = 44.3 bits (103), Expect = 2e-04
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+F+ NL D L+ +F FG + + KV D KG+GFV + A AI +
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQKQESAERAIDVM 149
Query: 339 NGYRLGERVLQVS-FKTSKQHKA 360
NG L R + V FK+ K+ +A
Sbjct: 150 NGMFLNYRKIFVGRFKSHKEREA 172
Score = 42.7 bits (99), Expect = 5e-04
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
++V +L PE E++L++ F P G + ++++ RD T + G+ +V +A A+ +L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 339 N 339
N
Sbjct: 64 N 64
Score = 42.4 bits (98), Expect = 7e-04
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
N+ + L + + ++F + G+I SCK+ D+ + GYGFV++ A++AI+
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDV 148
Query: 100 LNGLKLQTKTIKV 112
+NG+ L + I V
Sbjct: 149 MNGMFLNYRKIFV 161
>gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
Length = 382
Score = 88.2 bits (217), Expect = 1e-17
Identities = 73/327 (22%), Positives = 150/327 (45%), Gaps = 62/327 (18%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
N+ + L +++ LF + G+I SCK+V D S GY +V++ A++AI
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWH 164
Query: 100 LNGLKLQTKTIKV---SYARPSSASIRD------ANLYVSGLPKTMSQKEMEQLFSQYGR 150
+NG++L + + V + +A +R N++V + + +++++LF +YG
Sbjct: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 224
Query: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT 210
+ +++ D +G S+G GF+R++ A++A+ L+G+ G
Sbjct: 225 TESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKV--------------- 268
Query: 211 GQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSG 270
LY A++ +++ L + +RF + + S GV
Sbjct: 269 -------LYVGRAQK------------KIERLAELR---RRFERLRLKEKSRPPGVP--- 303
Query: 271 GAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDE 330
I++ NL ++ L + F FG+++ KV+ + + KGFG V ++++E
Sbjct: 304 --------IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEE 353
Query: 331 AAMAIASLNGYRLGERVLQVSFKTSKQ 357
A A+ +NG +G + L V+ +++
Sbjct: 354 ATKAVDEMNGRIVGSKPLHVTLGQARR 380
Score = 81.3 bits (199), Expect = 1e-15
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 4/153 (2%)
Query: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
K L V L ++T+D F G + ++ RD +T LGYG+VN+ P DA+ A+
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
Query: 98 NTLNGLKLQTKTIKVSYARPSSASIRD--ANLYVSGLPKTMSQKEMEQLFSQYGRIITSR 155
NT+N + K ++ +++P + N+++ L K++ + + LFS +G I++ +
Sbjct: 77 NTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 156 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
++ D S+G ++ FD A AI +NG
Sbjct: 137 VVCDD--NGSKGYAYVHFDSLAAANRAIWHMNG 167
Score = 72.0 bits (175), Expect = 8e-13
Identities = 46/176 (26%), Positives = 87/176 (49%), Gaps = 25/176 (14%)
Query: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
TN+ V + ++ ++ K LF G ES K++RD +G+S G+GFV Y A KA+
Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257
Query: 99 TLNGLKLQTKTIKVSYARPSSASIRDAN------------------LYVSGLPKTMSQKE 140
L+G + K + V A+ + + +Y+ L +T++ ++
Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 317
Query: 141 MEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ----KPL 192
+++ FS +G I ++++++ G +G G + F EA +A+ +NG+ KPL
Sbjct: 318 LKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371
Score = 44.7 bits (104), Expect = 1e-04
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
IF+ NL D L+ LF FG + + KV+ D N KG+ +V + A AI +
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165
Query: 339 NGYRLGERVLQVS-FKTSKQHKA 360
NG RL R + V FK ++ A
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAA 188
Score = 36.2 bits (82), Expect = 0.047
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
++V +L P+ E +L++ F P G + ++ RD T G+G+V +A A+ ++
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 339 N 339
N
Sbjct: 80 N 80
>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
sapiens]
Length = 485
Score = 87.4 bits (215), Expect = 2e-17
Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 10/211 (4%)
Query: 4 QILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIG 63
Q+L S VG +GP P G +G D L V +P+++ + + K LF G
Sbjct: 15 QLLQPRPSPVGS--SGPEPPGGQ---PDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFG 69
Query: 64 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL---QTKTIKVSYARPSSA 120
I +++D TG G F+ Y + A KA L+ K + I+V A S
Sbjct: 70 RIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR 129
Query: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
RD L+V L K S++++ +LF +G +I ++ G S+G F++F EA+
Sbjct: 130 GGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFSSHTEAQ 188
Query: 181 EAIKGLNGQKPL-GAAEPITVKFANNPSQKT 210
AI L+G + + GA+ + VKFA+ ++T
Sbjct: 189 AAIHALHGSQTMPGASSSLVVKFADTDKERT 219
Score = 73.2 bits (178), Expect = 3e-13
Identities = 91/360 (25%), Positives = 141/360 (39%), Gaps = 60/360 (16%)
Query: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
L V L + ++++ LF G I+ C ++R G S G FV +S +A AI+ L
Sbjct: 136 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHAL 194
Query: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS------ 154
+G S P ++S + +T+ + M+Q+ Q G + S
Sbjct: 195 HG----------SQTMPGASSSLVVKFADTDKERTL--RRMQQMVGQLGILTPSLTLPFS 242
Query: 155 ------RILVDQVTGV--------SRGVGFIRFDKRIEAEEAIKGLNG----------QK 190
+ L+ Q T V S GV F + ++ GL
Sbjct: 243 PYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSP 302
Query: 191 PL-------GAAEPITVKFAN-------NPSQKTGQALLTHLYQSSARRYAGPLHHQTQR 236
PL G PIT FA +P+ +T A Y + + A LH
Sbjct: 303 PLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLH---PA 359
Query: 237 FRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQL 296
F Y +PIA + G +F+Y+L E ++ L Q+
Sbjct: 360 FSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQM 419
Query: 297 FGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 356
F PFG + + KV D TN+ K FGFV+ N A AI ++NG+++G + L+V K K
Sbjct: 420 FLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 479
Score = 60.8 bits (146), Expect = 2e-09
Identities = 32/92 (34%), Positives = 46/92 (50%)
Query: 26 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFV 85
PLL NL + +LPQ E +F G+I S K+ D+ T QS +GFV
Sbjct: 387 PLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFV 446
Query: 86 NYSDPNDADKAINTLNGLKLQTKTIKVSYARP 117
++ +P A AI +NG ++ K +KV RP
Sbjct: 447 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 478
Score = 32.7 bits (73), Expect = 0.52
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
+FV + DE L LF FG + + V++D T KG F+T D A A +L
Sbjct: 47 LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 339 N 339
+
Sbjct: 107 H 107
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,782,247
Number of Sequences: 37866
Number of extensions: 542809
Number of successful extensions: 3094
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 1725
Number of HSP's gapped (non-prelim): 1049
length of query: 360
length of database: 18,247,518
effective HSP length: 103
effective length of query: 257
effective length of database: 14,347,320
effective search space: 3687261240
effective search space used: 3687261240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.