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Search of human proteins with 4885185
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4885185 distal-less homeobox 3 [Homo sapiens]
(287 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4885185 distal-less homeobox 3 [Homo sapiens] 600 e-172
gi|4885187 distal-less homeobox 5 [Homo sapiens] 259 2e-69
gi|4758168 distal-less homeobox 2 [Homo sapiens] 216 1e-56
gi|82659115 distal-less homeobox 6 [Homo sapiens] 139 4e-33
gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens] 137 1e-32
gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens] 124 1e-28
gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens] 120 1e-27
gi|14149728 BarH-like homeobox 1 [Homo sapiens] 86 4e-17
gi|6633798 BarH-like homeobox 2 [Homo sapiens] 82 4e-16
gi|27886557 msh homeobox 2 [Homo sapiens] 82 7e-16
gi|147901462 brain specific homeobox [Homo sapiens] 79 4e-15
gi|118582284 msh homeobox 1 [Homo sapiens] 79 5e-15
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap... 79 5e-15
gi|39930383 BarH-like homeobox 2 [Homo sapiens] 77 1e-14
gi|153218470 BarH-like homeobox 1 [Homo sapiens] 77 2e-14
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens] 76 3e-14
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 76 3e-14
gi|24497515 homeobox A3 isoform b [Homo sapiens] 76 4e-14
gi|24497513 homeobox A3 isoform a [Homo sapiens] 76 4e-14
gi|13562112 homeobox A3 isoform a [Homo sapiens] 76 4e-14
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 74 1e-13
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 73 3e-13
gi|5031761 homeobox A1 isoform a [Homo sapiens] 73 3e-13
gi|70608170 H6 family homeobox 2 [Homo sapiens] 72 4e-13
gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens] 72 4e-13
gi|226437602 NK1 homeobox 2 [Homo sapiens] 72 6e-13
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 72 6e-13
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 72 6e-13
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 72 6e-13
gi|7110735 ventral anterior homeobox 2 [Homo sapiens] 72 6e-13
>gi|4885185 distal-less homeobox 3 [Homo sapiens]
Length = 287
Score = 600 bits (1548), Expect = e-172
Identities = 287/287 (100%), Positives = 287/287 (100%)
Query: 1 MSGSFDRKLSSILTDISSSLSCHAGSKDSPTLPESSVTDLGYYSAPQHDYYSGQPYGQTV 60
MSGSFDRKLSSILTDISSSLSCHAGSKDSPTLPESSVTDLGYYSAPQHDYYSGQPYGQTV
Sbjct: 1 MSGSFDRKLSSILTDISSSLSCHAGSKDSPTLPESSVTDLGYYSAPQHDYYSGQPYGQTV 60
Query: 61 NPYTYHHQFNLNGLAGTGAYSPKSEYTYGASYRQYGAYREQPLPAQDPVSVKEEPEAEVR 120
NPYTYHHQFNLNGLAGTGAYSPKSEYTYGASYRQYGAYREQPLPAQDPVSVKEEPEAEVR
Sbjct: 61 NPYTYHHQFNLNGLAGTGAYSPKSEYTYGASYRQYGAYREQPLPAQDPVSVKEEPEAEVR 120
Query: 121 MVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNR 180
MVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNR
Sbjct: 121 MVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNR 180
Query: 181 RSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARSQLPPPLPYSAS 240
RSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARSQLPPPLPYSAS
Sbjct: 181 RSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARSQLPPPLPYSAS 240
Query: 241 PSYLDDPTNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPPNPGAVY 287
PSYLDDPTNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPPNPGAVY
Sbjct: 241 PSYLDDPTNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPPNPGAVY 287
>gi|4885187 distal-less homeobox 5 [Homo sapiens]
Length = 289
Score = 259 bits (662), Expect = 2e-69
Identities = 151/287 (52%), Positives = 184/287 (64%), Gaps = 21/287 (7%)
Query: 1 MSGSFDRKLSSILTD-----ISSSLSCHAGSKDSPTLPESSVTDLGYYS----APQHDYY 51
M+G FDR++ SI + +S + H S++SPTLPESS TD YYS AP H Y
Sbjct: 1 MTGVFDRRVPSIRSGDFQAPFQTSAAMHHPSQESPTLPESSATDSDYYSPTGGAP-HGYC 59
Query: 52 S--GQPYGQTVNPYTYHHQFNLNGLAGTGAYSPKSEYTYGASYRQYG-AYREQPLPAQDP 108
S YG+ +NPY Y + +NG AG+ ++Y+Y +SY QYG AY P P
Sbjct: 60 SPTSASYGKALNPYQYQYH-GVNGSAGSYPAKAYADYSYASSYHQYGGAYNRVPSATNQP 118
Query: 109 VSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGL 168
KE E EVRMVNGKPKKVRKPRTIYSS+QLAALQRRFQK QYLALPERAELAA LGL
Sbjct: 119 E--KEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGL 176
Query: 169 TQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPAR 228
TQTQVKIWFQN+RSK KK+ KNGE+P EHSP++SD MACNSP SPA+W+ S
Sbjct: 177 TQTQVKIWFQNKRSKIKKIMKNGEMPPEHSPSSSDPMACNSPQSPAVWEPQGSSRSLSHH 236
Query: 229 SQLPPPLP-YSASPSYLDDPTNSWYHAQNLSGPHLQQQPPQPATLHH 274
PP S + SYL++ + SWY + + + P P +L H
Sbjct: 237 PHAHPPTSNQSPASSYLEN-SASWYTS---AASSINSHLPPPGSLQH 279
>gi|4758168 distal-less homeobox 2 [Homo sapiens]
Length = 328
Score = 216 bits (551), Expect = 1e-56
Identities = 141/295 (47%), Positives = 170/295 (57%), Gaps = 32/295 (10%)
Query: 17 SSSLSCHAGSKDSPTLPESSVTDLGYYSAPQHDYYSGQPYGQTVNPYTY--HHQFNLNGL 74
SSS S H ++SPTLP S+ TD YY+ QH G G +PY + +Q+ +GL
Sbjct: 42 SSSSSLHK-PQESPTLPVSTATDSSYYTNQQHPAGGGGGGG---SPYAHMGSYQYQASGL 97
Query: 75 AGTGAYSPKSEYTYG--ASYRQYGAYREQPLPAQDPVSVKEEPEAEVRMVNGKPKKVRKP 132
YS KS Y G A+Y Y Y PA + KE+ E E+R+VNGKPKKVRKP
Sbjct: 98 NNV-PYSAKSSYDLGYTAAYTSYAPYGTSSSPANNEPE-KEDLEPEIRIVNGKPKKVRKP 155
Query: 133 RTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNGE 192
RTIYSS+QLAALQRRFQK QYLALPERAELAA LGLTQTQVKIWFQNRRSKFKK++K+GE
Sbjct: 156 RTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGE 215
Query: 193 VPLEHSPNNSDSMACNSPP--SPALWD------TSSHSTPAPARSQL--PPPLPYSASPS 242
+P E P S S C SPP +PA WD + P S P SA+ +
Sbjct: 216 IPSEQHPGASASPPCASPPVSAPASWDFGVPQRMAGGGGPGSGGSGAGSSGSSPSSAASA 275
Query: 243 YLDDPTNSWYHAQNLSGPHLQ--------QQPPQP--ATLHHASPGPPPNPGAVY 287
+L + WYH + S HLQ Q PQP HH G P + G ++
Sbjct: 276 FLGN--YPWYHQTSGSASHLQATAPLLHPTQTPQPHHHHHHHGGGGAPVSAGTIF 328
>gi|82659115 distal-less homeobox 6 [Homo sapiens]
Length = 265
Score = 139 bits (349), Expect = 4e-33
Identities = 101/240 (42%), Positives = 123/240 (51%), Gaps = 35/240 (14%)
Query: 46 PQHDYYSGQPYGQTVNPYTYHHQFNLNGL----AGTGAYSPKSEYTYG-ASYRQYG---- 96
P H +S + + +HHQ + +G G +Y+ +S Y S+ Q+
Sbjct: 42 PLHCLHSAAAAAAAGSHHHHHHQHHHHGSPYASGGGNSYNHRSLAAYPYMSHSQHSPYLQ 101
Query: 97 AYREQPLPAQ------DPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQK 150
+Y AQ D E+R NGK KK+RKPRTIYSS QL AL RFQ+
Sbjct: 102 SYHNSSAAAQTRGDDTDQQKTTVIENGEIRF-NGKGKKIRKPRTIYSSLQLQALNHRFQQ 160
Query: 151 AQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSP-NNSDSMACNS 209
QYLALPERAELAA LGLTQTQVKIWFQN+RSKFKKL K G P E P S +++ S
Sbjct: 161 TQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLLKQGSNPHESDPLQGSAALSPRS 220
Query: 210 PPSPALWDTSSHSTPAPARSQLPPPLPYSASPSYLDDPTNSWYHAQNLSGPHLQ-QQPPQ 268
P P +WD S A A+ PP Y P Y + WY S PH Q PQ
Sbjct: 221 PALPPVWDVS-----ASAKGVSMPPNSY--MPGY-----SHWY-----SSPHQDTMQRPQ 263
>gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]
Length = 255
Score = 137 bits (344), Expect = 1e-32
Identities = 98/224 (43%), Positives = 120/224 (53%), Gaps = 23/224 (10%)
Query: 43 YSAPQHDYYSGQPYGQTVNPYTYHHQFNLNGLAGTGAYSPKSEYTYGASYRQYGAYREQP 102
+S P Y S + + P Y + +++ A + S Y AS Q + E P
Sbjct: 50 HSQPDGAYSSASSFSR---PLGYPYVNSVSSHASSPYISSVQSYPGSASLAQ--SRLEDP 104
Query: 103 LPAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAEL 162
+ +V E EVR NGK KK+RKPRTIYSS QL AL RRFQ+ QYLALPERAEL
Sbjct: 105 GADSEKSTVVEG--GEVRF-NGKGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAEL 161
Query: 163 AAQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSP-NNSDSMACNSPPSPALWDTSSH 221
AA LGLTQTQVKIWFQN+RSKFKKL K G LE S N +++ SPP P W+ +S
Sbjct: 162 AASLGLTQTQVKIWFQNKRSKFKKLMKQGGAALEGSALANGRALSAGSPPVPPGWNPNSS 221
Query: 222 STPAPARSQLPPPLPYSASPSYLDDPTNSWY---HAQNLSGPHL 262
S + S PSY SWY H + + P L
Sbjct: 222 SGKGSGGN------AGSYIPSY-----TSWYPSAHQEAMQQPQL 254
>gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]
Length = 240
Score = 124 bits (311), Expect = 1e-28
Identities = 83/179 (46%), Positives = 98/179 (54%), Gaps = 28/179 (15%)
Query: 73 GLAGTGAYSPKSEYTY----------------GASYR--QYGAYREQPL--PAQDPVSVK 112
GL+ T A SP Y+ G SY Q A QPL PA+ P ++
Sbjct: 34 GLSPTTAASPNLSYSRPYGHLLSYPYTEPANPGDSYLSCQQPAALSQPLCGPAEHPQELE 93
Query: 113 EE-------PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQ 165
+ PE R KK+RKPRTIYSS QL L +RFQ QYLALPERA+LAAQ
Sbjct: 94 ADSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQ 153
Query: 166 LGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHS-PNNSDSMACNSPPSPALWDTSSHST 223
LGLTQTQVKIWFQN+RSK+KKL K E P + S++ SPP P+LWD T
Sbjct: 154 LGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGT 212
>gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens]
Length = 168
Score = 120 bits (302), Expect = 1e-27
Identities = 65/110 (59%), Positives = 74/110 (67%), Gaps = 1/110 (0%)
Query: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174
PE R KK+RKPRTIYSS QL L +RFQ QYLALPERA+LAAQLGLTQTQVK
Sbjct: 31 PEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVK 90
Query: 175 IWFQNRRSKFKKLYKNGEVPLEHS-PNNSDSMACNSPPSPALWDTSSHST 223
IWFQN+RSK+KKL K E P + S++ SPP P+LWD T
Sbjct: 91 IWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGT 140
>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
Length = 327
Score = 85.9 bits (211), Expect = 4e-17
Identities = 58/159 (36%), Positives = 78/159 (49%), Gaps = 33/159 (20%)
Query: 111 VKEEPEAEVRMVNGKP----KKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQL 166
VKEE + E+ P KK RK RT ++ +QLA L+R F++ +YL++ +R ELAA L
Sbjct: 156 VKEEGDREISSSRDSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASL 215
Query: 167 GLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNS-------------DSMACNSPPSP 213
LT TQVK W+QNRR+K+K+ G L + N S S+ N P
Sbjct: 216 NLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGA 275
Query: 214 ALWDTSSHSTPAPA----------------RSQLPPPLP 236
AL+ S P PA S+ PPPLP
Sbjct: 276 ALYLYRGPSAPPPALQRPLVPRILIHGLQGASEPPPPLP 314
Score = 33.5 bits (75), Expect = 0.22
Identities = 31/94 (32%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 194 PLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARSQLPPPLPYSASPSYLDDPTNS-WY 252
PLE SP + S C+SP SP D TP P + P L P L P S
Sbjct: 35 PLELSPRSESSSDCSSPASPGR-DCLETGTPRPGGAS-GPGLDSHLQPGQLSAPAQSRTV 92
Query: 253 HAQNLSGPHLQQQPPQPATLHHASPGPP--PNPG 284
+ L L P A ++S G P P PG
Sbjct: 93 TSSFLIRDILADCKPLAACAPYSSSGQPAAPEPG 126
>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
Length = 279
Score = 82.4 bits (202), Expect = 4e-16
Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 116 EAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKI 175
E+E + KK R+ RTI++ QL L+++FQK +YL+ P+R +LA LGLTQ QVK
Sbjct: 120 ESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKT 179
Query: 176 WFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARSQLPP-- 233
W+QNRR K+KK+ G P + P S + ++ A + QL P
Sbjct: 180 WYQNRRMKWKKMVLKGGQEAPTKPKGRPKKN-SIPTSEEIEAEEKMNSQAQGQEQLEPSQ 238
Query: 234 ---PLPYSASPSYLDDPTNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPP 281
L + P D P + + P P L S PPP
Sbjct: 239 GQEELCEAQEPKARDVPL------------EMAEPPDPPQELPIPSSEPPP 277
>gi|27886557 msh homeobox 2 [Homo sapiens]
Length = 267
Score = 81.6 bits (200), Expect = 7e-16
Identities = 51/121 (42%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Query: 125 KPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKF 184
K K RKPRT +++ QL AL+R+F++ QYL++ ERAE ++ L LT+TQVKIWFQNRR+K
Sbjct: 138 KHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKA 197
Query: 185 KKLYKN--GEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAP-ARSQLP-PPLPYSAS 240
K+L + ++ + P S + P S L S + P R LP PP+ A+
Sbjct: 198 KRLQEAELEKLKMAAKPMLPSSFSLPFPISSPLQAASIYGASYPFHRPVLPIPPVGLYAT 257
Query: 241 P 241
P
Sbjct: 258 P 258
>gi|147901462 brain specific homeobox [Homo sapiens]
Length = 233
Score = 79.3 bits (194), Expect = 4e-15
Identities = 55/152 (36%), Positives = 77/152 (50%), Gaps = 19/152 (12%)
Query: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174
P + + GK + RK RT++S QL+ L++RF+ +YL+ PER ELA L L++TQVK
Sbjct: 96 PHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVK 155
Query: 175 IWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSH-STPAPARSQLPP 233
WFQNRR K KK + + + A + P SP S +T A AR LP
Sbjct: 156 TWFQNRRMKHKKQLRKSQ---------DEPKAPDGPESPEGSPRGSEAATAAEARLSLP- 205
Query: 234 PLPYSASPSYLDDPTNS---WYHAQNLSGPHL 262
A P L +P + + SGPH+
Sbjct: 206 -----AGPFVLTEPEDEVDIGDEGELGSGPHV 232
>gi|118582284 msh homeobox 1 [Homo sapiens]
Length = 303
Score = 79.0 bits (193), Expect = 5e-15
Identities = 37/63 (58%), Positives = 51/63 (80%)
Query: 125 KPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKF 184
K K RKPRT +++ QL AL+R+F++ QYL++ ERAE ++ L LT+TQVKIWFQNRR+K
Sbjct: 168 KHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKA 227
Query: 185 KKL 187
K+L
Sbjct: 228 KRL 230
>gi|210147470 NK2 transcription factor related, locus 6 [Homo
sapiens]
Length = 219
Score = 79.0 bits (193), Expect = 5e-15
Identities = 55/145 (37%), Positives = 73/145 (50%), Gaps = 14/145 (9%)
Query: 125 KPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKF 184
K ++ RKPR ++S Q+ AL+RRF++ +YL+ PER LA+ L LT TQVKIWFQNRR K
Sbjct: 46 KARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKC 105
Query: 185 KKLYKNGEVPLEHSPNNSDSMACNSPPSPAL-WDTSSHSTPAPARSQLPPPL-----PYS 238
K+ ++ + L P +A P L D P P P P PYS
Sbjct: 106 KRQRQDKSLELAGHPLTPRRVAV-----PVLVRDGKPCLGPGPGAPAFPSPYSAAVSPYS 160
Query: 239 ASPSYLDDPTNSWY---HAQNLSGP 260
Y P + Y +A SGP
Sbjct: 161 CYGGYSGAPYGAGYGTCYAGAPSGP 185
>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
Length = 387
Score = 77.4 bits (189), Expect = 1e-14
Identities = 58/177 (32%), Positives = 82/177 (46%), Gaps = 23/177 (12%)
Query: 112 KEEPEAEVRMVNGKP----KKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLG 167
KEE + E+ P KK RK RT +S +QL L+R F++ +YL++ +R +LAA L
Sbjct: 211 KEEGDREITSSRESPPVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALN 270
Query: 168 LTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACNSPP---SPALWDTSSHSTP 224
LT TQVK W+QNRR+K+K+ G L + N S P P+L + +T
Sbjct: 271 LTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYHPSLLGSMDSTTA 330
Query: 225 APARSQLPPPLPYSASPSYLDDPTNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPP 281
A A + + YS S Y P LQ+ +H PG P
Sbjct: 331 AAAAAAM-----YS-----------SMYRTPPAPHPQLQRPLVPRVLIHGLGPGGQP 371
>gi|153218470 BarH-like homeobox 1 [Homo sapiens]
Length = 254
Score = 76.6 bits (187), Expect = 2e-14
Identities = 34/67 (50%), Positives = 49/67 (73%)
Query: 125 KPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKF 184
K KK R+ RT+++ QL L++RF+K +YL+ P+R +LA LGL+Q QVK W+QNRR K+
Sbjct: 138 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKW 197
Query: 185 KKLYKNG 191
KK+ G
Sbjct: 198 KKIVLQG 204
>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
Length = 324
Score = 76.3 bits (186), Expect = 3e-14
Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 21/160 (13%)
Query: 102 PLPAQDPVSVKEEPEAEVRMVN-----------GKPKKVRKPRTIYSSYQLAALQRRFQK 150
P PA+DP + K+E A + V + ++ RKPR ++S Q+ L+RRF++
Sbjct: 100 PDPAKDPRAEKKELCALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQ 159
Query: 151 AQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACN-- 208
+YL+ PER +LA+ L LT TQVKIWFQNRR K K+ ++ + L P A
Sbjct: 160 QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIA 219
Query: 209 -----SPPSPALWDTSSHSTPAPARSQLPPPLPYSASPSY 243
P L D++ + APA P Y+A P+Y
Sbjct: 220 VPVLVRDGKPCLGDSAPY---APAYGVGLNPYGYNAYPAY 256
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 76.3 bits (186), Expect = 3e-14
Identities = 38/76 (50%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 125 KPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKF 184
KP+ RKPR ++S Q+ L+RRF++ +YL+ PER LA+ L LT TQVKIWFQNRR K
Sbjct: 144 KPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKC 203
Query: 185 KKLYKNGEVPL-EHSP 199
K+ ++ + L H+P
Sbjct: 204 KRQRQDKSLELGAHAP 219
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 75.9 bits (185), Expect = 4e-14
Identities = 54/154 (35%), Positives = 71/154 (46%), Gaps = 22/154 (14%)
Query: 130 RKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYK 189
++ RT Y+S QL L++ F +YL P R E+A L LT+ Q+KIWFQNRR K+KK K
Sbjct: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
Query: 190 NGEVPLEHSPNNSDSMACNSPPSPALWDTSSHS--TPAPARSQLPPPLPYSASPSYLDDP 247
G+ L S S S + PP + S HS P Q PPP +Y P
Sbjct: 94 -GKGMLTSSGGQSPSRS-PVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPP 151
Query: 248 TNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPP 281
+ PA+L +P PPP
Sbjct: 152 AS------------------YPASLPSCAPPPPP 167
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 75.9 bits (185), Expect = 4e-14
Identities = 54/154 (35%), Positives = 71/154 (46%), Gaps = 22/154 (14%)
Query: 130 RKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYK 189
++ RT Y+S QL L++ F +YL P R E+A L LT+ Q+KIWFQNRR K+KK K
Sbjct: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251
Query: 190 NGEVPLEHSPNNSDSMACNSPPSPALWDTSSHS--TPAPARSQLPPPLPYSASPSYLDDP 247
G+ L S S S + PP + S HS P Q PPP +Y P
Sbjct: 252 -GKGMLTSSGGQSPSRS-PVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPP 309
Query: 248 TNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPP 281
+ PA+L +P PPP
Sbjct: 310 AS------------------YPASLPSCAPPPPP 325
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 75.9 bits (185), Expect = 4e-14
Identities = 54/154 (35%), Positives = 71/154 (46%), Gaps = 22/154 (14%)
Query: 130 RKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYK 189
++ RT Y+S QL L++ F +YL P R E+A L LT+ Q+KIWFQNRR K+KK K
Sbjct: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251
Query: 190 NGEVPLEHSPNNSDSMACNSPPSPALWDTSSHS--TPAPARSQLPPPLPYSASPSYLDDP 247
G+ L S S S + PP + S HS P Q PPP +Y P
Sbjct: 252 -GKGMLTSSGGQSPSRS-PVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPP 309
Query: 248 TNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPP 281
+ PA+L +P PPP
Sbjct: 310 AS------------------YPASLPSCAPPPPP 325
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 73.9 bits (180), Expect = 1e-13
Identities = 70/225 (31%), Positives = 100/225 (44%), Gaps = 28/225 (12%)
Query: 79 AYSPKSEYTYGASY--RQYGAYREQPLPAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIY 136
A +P EY Y ++ G R P P + EA++ KK R+ RT +
Sbjct: 88 APAPAPEYEAPRPYCPKEPGEARPSPGLPVGPAT----GEAKLSEEEQPKKKHRRNRTTF 143
Query: 137 SSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYK--NGEVP 194
++YQL L+R F+K+ Y + R ELA ++ L + +V++WFQNRR+K+++ K +
Sbjct: 144 TTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMK 203
Query: 195 LEHSPNNSDSMACNSPPSPAL----WDTSSHSTPA----PARSQLPPPLPYSASPSYLDD 246
L+ SP S S SPPS L S PA P S L PPLP + L
Sbjct: 204 LQDSPLLSFS---RSPPSATLSPLGAGPGSGGGPAGGALPLESWLGPPLP-GGGATALQS 259
Query: 247 PTNSWYHAQNLSGPHLQQQPPQP--------ATLHHASPGPPPNP 283
AQ+L + PP P L +P PP P
Sbjct: 260 LPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPPPSYP 304
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 73.2 bits (178), Expect = 3e-13
Identities = 55/180 (30%), Positives = 74/180 (41%), Gaps = 19/180 (10%)
Query: 123 NGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRS 182
+ K K R+ RT ++ QL AL+ +F+ +YL++ ER LA L LT+TQVKIWFQNRR+
Sbjct: 91 DSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRT 150
Query: 183 KFKKLYKNGEVPLEHSPNNSDSMACN---------SP--PSPALWDTSSHSTPAPARSQL 231
K+KK + SP PSP + PA +
Sbjct: 151 KWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHG 210
Query: 232 PPPLPYSASPSYLDDPT--------NSWYHAQNLSGPHLQQQPPQPATLHHASPGPPPNP 283
P L +A +L P + Y A PHL P P P P P
Sbjct: 211 PGGLVCAAQLPFLSSPAVLSPFVLGSQTYGAPAFYAPHLLSPVPLXXXXXXXPPRPLPGP 270
>gi|5031761 homeobox A1 isoform a [Homo sapiens]
Length = 335
Score = 72.8 bits (177), Expect = 3e-13
Identities = 64/205 (31%), Positives = 89/205 (43%), Gaps = 26/205 (12%)
Query: 41 GYYSAPQ---HDYYSGQPYGQTVNPYTYHHQFNLNGLAGTGAYSPKSEYTYGASYRQY-- 95
G S+P H ++ G G +P HH + + A S AS+++
Sbjct: 133 GNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSPLHASHQEACR 192
Query: 96 GAYREQPLPAQ--DPVSVKEEPEAEVRMVN----GKPKKVRKPRTIYSSYQLAALQRRFQ 149
E PAQ D + VK P ++ G+P VR T +++ QL L++ F
Sbjct: 193 SPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVR---TNFTTKQLTELEKEFH 249
Query: 150 KAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPL------------EH 197
+YL R E+AA L L +TQVKIWFQNRR K KK K G +P+ E
Sbjct: 250 FNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATPPGNDEKAEE 309
Query: 198 SPNNSDSMACNSPPSPALWDTSSHS 222
S S S C P + DT + S
Sbjct: 310 SSEKSSSSPCVPSPGSSTSDTLTTS 334
>gi|70608170 H6 family homeobox 2 [Homo sapiens]
Length = 273
Score = 72.4 bits (176), Expect = 4e-13
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 6/169 (3%)
Query: 73 GLAGTGAYSPKSEYTYGASYRQYGAYREQPLPAQDPVSVKEEP-EAEVRMVNGKPKKVRK 131
G G+G + S+ + +E+ LPA P E P + G KK K
Sbjct: 94 GSGGSGPGGLERTPFLSPSHSDFKEEKERLLPAGSPSPGSERPRDGGAERQAGAAKK--K 151
Query: 132 PRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNG 191
RT++S Q+ L+ F +YL+ ERA LA+ L LT+TQVK WFQNRR+K+K+ +
Sbjct: 152 TRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKR-QLSA 210
Query: 192 EVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARSQLPPPLPYSAS 240
E+ + + S + P D+S P P P PL Y S
Sbjct: 211 ELEAANMAHASAQTLVSMP--LVFRDSSLLRVPVPRSLAFPAPLYYPGS 257
>gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens]
Length = 273
Score = 72.4 bits (176), Expect = 4e-13
Identities = 49/137 (35%), Positives = 68/137 (49%), Gaps = 23/137 (16%)
Query: 56 YGQTVNPYTYHH------QFNLNGLAGTGAYSPKSEYTYGASYRQYGAYREQPLPAQDPV 109
Y + NPYT Q++L+GLA GA + + +P + P
Sbjct: 66 YDSSDNPYTRWLASTEGLQYSLHGLAA------------GAPPQDSSSKSPEPSADESPD 113
Query: 110 SVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLT 169
+ KE P G K RK R ++S Q L+RRF++ +YL+ PER LA+ + LT
Sbjct: 114 NDKETPGG-----GGDAGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLT 168
Query: 170 QTQVKIWFQNRRSKFKK 186
TQVKIWFQN R K K+
Sbjct: 169 PTQVKIWFQNHRYKMKR 185
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 72.0 bits (175), Expect = 6e-13
Identities = 36/83 (43%), Positives = 50/83 (60%)
Query: 104 PAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELA 163
P + P P R + K R+ RT ++ QL AL+ +F+ +YL++ ER LA
Sbjct: 138 PVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLA 197
Query: 164 AQLGLTQTQVKIWFQNRRSKFKK 186
L LT+TQVKIWFQNRR+K+KK
Sbjct: 198 LSLSLTETQVKIWFQNRRTKWKK 220
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 72.0 bits (175), Expect = 6e-13
Identities = 36/83 (43%), Positives = 50/83 (60%)
Query: 104 PAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELA 163
P + P P R + K R+ RT ++ QL AL+ +F+ +YL++ ER LA
Sbjct: 160 PVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLA 219
Query: 164 AQLGLTQTQVKIWFQNRRSKFKK 186
L LT+TQVKIWFQNRR+K+KK
Sbjct: 220 LSLSLTETQVKIWFQNRRTKWKK 242
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 72.0 bits (175), Expect = 6e-13
Identities = 36/83 (43%), Positives = 50/83 (60%)
Query: 104 PAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELA 163
P + P P R + K R+ RT ++ QL AL+ +F+ +YL++ ER LA
Sbjct: 160 PVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLA 219
Query: 164 AQLGLTQTQVKIWFQNRRSKFKK 186
L LT+TQVKIWFQNRR+K+KK
Sbjct: 220 LSLSLTETQVKIWFQNRRTKWKK 242
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 72.0 bits (175), Expect = 6e-13
Identities = 36/83 (43%), Positives = 50/83 (60%)
Query: 104 PAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELA 163
P + P P R + K R+ RT ++ QL AL+ +F+ +YL++ ER LA
Sbjct: 160 PVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLA 219
Query: 164 AQLGLTQTQVKIWFQNRRSKFKK 186
L LT+TQVKIWFQNRR+K+KK
Sbjct: 220 LSLSLTETQVKIWFQNRRTKWKK 242
>gi|7110735 ventral anterior homeobox 2 [Homo sapiens]
Length = 290
Score = 72.0 bits (175), Expect = 6e-13
Identities = 72/219 (32%), Positives = 101/219 (46%), Gaps = 25/219 (11%)
Query: 74 LAGTGAYSPKSEYTYGASYRQYGAYRE-QPLPAQDP----VSVKEEPEAEVRMVNGKPKK 128
+AGT A SP A R+ GA + QP P + + V++ +V K
Sbjct: 46 VAGTSASSP-------AGSRESGADSDGQPGPGEADHCRRILVRDAKGTIREIVLPKGLD 98
Query: 129 VRKP---RTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFK 185
+ +P RT +++ QL L+ FQ+ QY+ ER ELA QL L++TQVK+WFQNRR+K K
Sbjct: 99 LDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQK 158
Query: 186 KLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARSQLP-----PPLPYSAS 240
K+ LE ++S S A + L + + A S L P LP S
Sbjct: 159 ---KDQSRDLEKRASSSASEAFATSNILRLLEQGRLLSVPRAPSLLALTPSLPGLPASHR 215
Query: 241 PSYLDDPTNSWYHAQNLSGPHLQQ--QPPQPATLHHASP 277
+ L DP NS LS PP PA ++P
Sbjct: 216 GTSLGDPRNSSPRLNPLSSASASPPLPPPLPAVCFSSAP 254
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.128 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,936,755
Number of Sequences: 37866
Number of extensions: 900162
Number of successful extensions: 6094
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 410
Number of HSP's that attempted gapping in prelim test: 4631
Number of HSP's gapped (non-prelim): 1693
length of query: 287
length of database: 18,247,518
effective HSP length: 101
effective length of query: 186
effective length of database: 14,423,052
effective search space: 2682687672
effective search space used: 2682687672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.