BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|4885185 distal-less homeobox 3 [Homo sapiens] (287 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|4885185 distal-less homeobox 3 [Homo sapiens] 600 e-172 gi|4885187 distal-less homeobox 5 [Homo sapiens] 259 2e-69 gi|4758168 distal-less homeobox 2 [Homo sapiens] 216 1e-56 gi|82659115 distal-less homeobox 6 [Homo sapiens] 139 4e-33 gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens] 137 1e-32 gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens] 124 1e-28 gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens] 120 1e-27 gi|14149728 BarH-like homeobox 1 [Homo sapiens] 86 4e-17 gi|6633798 BarH-like homeobox 2 [Homo sapiens] 82 4e-16 gi|27886557 msh homeobox 2 [Homo sapiens] 82 7e-16 gi|147901462 brain specific homeobox [Homo sapiens] 79 4e-15 gi|118582284 msh homeobox 1 [Homo sapiens] 79 5e-15 gi|210147470 NK2 transcription factor related, locus 6 [Homo sap... 79 5e-15 gi|39930383 BarH-like homeobox 2 [Homo sapiens] 77 1e-14 gi|153218470 BarH-like homeobox 1 [Homo sapiens] 77 2e-14 gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens] 76 3e-14 gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 76 3e-14 gi|24497515 homeobox A3 isoform b [Homo sapiens] 76 4e-14 gi|24497513 homeobox A3 isoform a [Homo sapiens] 76 4e-14 gi|13562112 homeobox A3 isoform a [Homo sapiens] 76 4e-14 gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 74 1e-13 gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 73 3e-13 gi|5031761 homeobox A1 isoform a [Homo sapiens] 73 3e-13 gi|70608170 H6 family homeobox 2 [Homo sapiens] 72 4e-13 gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens] 72 4e-13 gi|226437602 NK1 homeobox 2 [Homo sapiens] 72 6e-13 gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 72 6e-13 gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 72 6e-13 gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 72 6e-13 gi|7110735 ventral anterior homeobox 2 [Homo sapiens] 72 6e-13 >gi|4885185 distal-less homeobox 3 [Homo sapiens] Length = 287 Score = 600 bits (1548), Expect = e-172 Identities = 287/287 (100%), Positives = 287/287 (100%) Query: 1 MSGSFDRKLSSILTDISSSLSCHAGSKDSPTLPESSVTDLGYYSAPQHDYYSGQPYGQTV 60 MSGSFDRKLSSILTDISSSLSCHAGSKDSPTLPESSVTDLGYYSAPQHDYYSGQPYGQTV Sbjct: 1 MSGSFDRKLSSILTDISSSLSCHAGSKDSPTLPESSVTDLGYYSAPQHDYYSGQPYGQTV 60 Query: 61 NPYTYHHQFNLNGLAGTGAYSPKSEYTYGASYRQYGAYREQPLPAQDPVSVKEEPEAEVR 120 NPYTYHHQFNLNGLAGTGAYSPKSEYTYGASYRQYGAYREQPLPAQDPVSVKEEPEAEVR Sbjct: 61 NPYTYHHQFNLNGLAGTGAYSPKSEYTYGASYRQYGAYREQPLPAQDPVSVKEEPEAEVR 120 Query: 121 MVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNR 180 MVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNR Sbjct: 121 MVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNR 180 Query: 181 RSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARSQLPPPLPYSAS 240 RSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARSQLPPPLPYSAS Sbjct: 181 RSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARSQLPPPLPYSAS 240 Query: 241 PSYLDDPTNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPPNPGAVY 287 PSYLDDPTNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPPNPGAVY Sbjct: 241 PSYLDDPTNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPPNPGAVY 287 >gi|4885187 distal-less homeobox 5 [Homo sapiens] Length = 289 Score = 259 bits (662), Expect = 2e-69 Identities = 151/287 (52%), Positives = 184/287 (64%), Gaps = 21/287 (7%) Query: 1 MSGSFDRKLSSILTD-----ISSSLSCHAGSKDSPTLPESSVTDLGYYS----APQHDYY 51 M+G FDR++ SI + +S + H S++SPTLPESS TD YYS AP H Y Sbjct: 1 MTGVFDRRVPSIRSGDFQAPFQTSAAMHHPSQESPTLPESSATDSDYYSPTGGAP-HGYC 59 Query: 52 S--GQPYGQTVNPYTYHHQFNLNGLAGTGAYSPKSEYTYGASYRQYG-AYREQPLPAQDP 108 S YG+ +NPY Y + +NG AG+ ++Y+Y +SY QYG AY P P Sbjct: 60 SPTSASYGKALNPYQYQYH-GVNGSAGSYPAKAYADYSYASSYHQYGGAYNRVPSATNQP 118 Query: 109 VSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGL 168 KE E EVRMVNGKPKKVRKPRTIYSS+QLAALQRRFQK QYLALPERAELAA LGL Sbjct: 119 E--KEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGL 176 Query: 169 TQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPAR 228 TQTQVKIWFQN+RSK KK+ KNGE+P EHSP++SD MACNSP SPA+W+ S Sbjct: 177 TQTQVKIWFQNKRSKIKKIMKNGEMPPEHSPSSSDPMACNSPQSPAVWEPQGSSRSLSHH 236 Query: 229 SQLPPPLP-YSASPSYLDDPTNSWYHAQNLSGPHLQQQPPQPATLHH 274 PP S + SYL++ + SWY + + + P P +L H Sbjct: 237 PHAHPPTSNQSPASSYLEN-SASWYTS---AASSINSHLPPPGSLQH 279 >gi|4758168 distal-less homeobox 2 [Homo sapiens] Length = 328 Score = 216 bits (551), Expect = 1e-56 Identities = 141/295 (47%), Positives = 170/295 (57%), Gaps = 32/295 (10%) Query: 17 SSSLSCHAGSKDSPTLPESSVTDLGYYSAPQHDYYSGQPYGQTVNPYTY--HHQFNLNGL 74 SSS S H ++SPTLP S+ TD YY+ QH G G +PY + +Q+ +GL Sbjct: 42 SSSSSLHK-PQESPTLPVSTATDSSYYTNQQHPAGGGGGGG---SPYAHMGSYQYQASGL 97 Query: 75 AGTGAYSPKSEYTYG--ASYRQYGAYREQPLPAQDPVSVKEEPEAEVRMVNGKPKKVRKP 132 YS KS Y G A+Y Y Y PA + KE+ E E+R+VNGKPKKVRKP Sbjct: 98 NNV-PYSAKSSYDLGYTAAYTSYAPYGTSSSPANNEPE-KEDLEPEIRIVNGKPKKVRKP 155 Query: 133 RTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNGE 192 RTIYSS+QLAALQRRFQK QYLALPERAELAA LGLTQTQVKIWFQNRRSKFKK++K+GE Sbjct: 156 RTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGE 215 Query: 193 VPLEHSPNNSDSMACNSPP--SPALWD------TSSHSTPAPARSQL--PPPLPYSASPS 242 +P E P S S C SPP +PA WD + P S P SA+ + Sbjct: 216 IPSEQHPGASASPPCASPPVSAPASWDFGVPQRMAGGGGPGSGGSGAGSSGSSPSSAASA 275 Query: 243 YLDDPTNSWYHAQNLSGPHLQ--------QQPPQP--ATLHHASPGPPPNPGAVY 287 +L + WYH + S HLQ Q PQP HH G P + G ++ Sbjct: 276 FLGN--YPWYHQTSGSASHLQATAPLLHPTQTPQPHHHHHHHGGGGAPVSAGTIF 328 >gi|82659115 distal-less homeobox 6 [Homo sapiens] Length = 265 Score = 139 bits (349), Expect = 4e-33 Identities = 101/240 (42%), Positives = 123/240 (51%), Gaps = 35/240 (14%) Query: 46 PQHDYYSGQPYGQTVNPYTYHHQFNLNGL----AGTGAYSPKSEYTYG-ASYRQYG---- 96 P H +S + + +HHQ + +G G +Y+ +S Y S+ Q+ Sbjct: 42 PLHCLHSAAAAAAAGSHHHHHHQHHHHGSPYASGGGNSYNHRSLAAYPYMSHSQHSPYLQ 101 Query: 97 AYREQPLPAQ------DPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQK 150 +Y AQ D E+R NGK KK+RKPRTIYSS QL AL RFQ+ Sbjct: 102 SYHNSSAAAQTRGDDTDQQKTTVIENGEIRF-NGKGKKIRKPRTIYSSLQLQALNHRFQQ 160 Query: 151 AQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSP-NNSDSMACNS 209 QYLALPERAELAA LGLTQTQVKIWFQN+RSKFKKL K G P E P S +++ S Sbjct: 161 TQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLLKQGSNPHESDPLQGSAALSPRS 220 Query: 210 PPSPALWDTSSHSTPAPARSQLPPPLPYSASPSYLDDPTNSWYHAQNLSGPHLQ-QQPPQ 268 P P +WD S A A+ PP Y P Y + WY S PH Q PQ Sbjct: 221 PALPPVWDVS-----ASAKGVSMPPNSY--MPGY-----SHWY-----SSPHQDTMQRPQ 263 >gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens] Length = 255 Score = 137 bits (344), Expect = 1e-32 Identities = 98/224 (43%), Positives = 120/224 (53%), Gaps = 23/224 (10%) Query: 43 YSAPQHDYYSGQPYGQTVNPYTYHHQFNLNGLAGTGAYSPKSEYTYGASYRQYGAYREQP 102 +S P Y S + + P Y + +++ A + S Y AS Q + E P Sbjct: 50 HSQPDGAYSSASSFSR---PLGYPYVNSVSSHASSPYISSVQSYPGSASLAQ--SRLEDP 104 Query: 103 LPAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAEL 162 + +V E EVR NGK KK+RKPRTIYSS QL AL RRFQ+ QYLALPERAEL Sbjct: 105 GADSEKSTVVEG--GEVRF-NGKGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAEL 161 Query: 163 AAQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSP-NNSDSMACNSPPSPALWDTSSH 221 AA LGLTQTQVKIWFQN+RSKFKKL K G LE S N +++ SPP P W+ +S Sbjct: 162 AASLGLTQTQVKIWFQNKRSKFKKLMKQGGAALEGSALANGRALSAGSPPVPPGWNPNSS 221 Query: 222 STPAPARSQLPPPLPYSASPSYLDDPTNSWY---HAQNLSGPHL 262 S + S PSY SWY H + + P L Sbjct: 222 SGKGSGGN------AGSYIPSY-----TSWYPSAHQEAMQQPQL 254 >gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens] Length = 240 Score = 124 bits (311), Expect = 1e-28 Identities = 83/179 (46%), Positives = 98/179 (54%), Gaps = 28/179 (15%) Query: 73 GLAGTGAYSPKSEYTY----------------GASYR--QYGAYREQPL--PAQDPVSVK 112 GL+ T A SP Y+ G SY Q A QPL PA+ P ++ Sbjct: 34 GLSPTTAASPNLSYSRPYGHLLSYPYTEPANPGDSYLSCQQPAALSQPLCGPAEHPQELE 93 Query: 113 EE-------PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQ 165 + PE R KK+RKPRTIYSS QL L +RFQ QYLALPERA+LAAQ Sbjct: 94 ADSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQ 153 Query: 166 LGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHS-PNNSDSMACNSPPSPALWDTSSHST 223 LGLTQTQVKIWFQN+RSK+KKL K E P + S++ SPP P+LWD T Sbjct: 154 LGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGT 212 >gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens] Length = 168 Score = 120 bits (302), Expect = 1e-27 Identities = 65/110 (59%), Positives = 74/110 (67%), Gaps = 1/110 (0%) Query: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174 PE R KK+RKPRTIYSS QL L +RFQ QYLALPERA+LAAQLGLTQTQVK Sbjct: 31 PEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVK 90 Query: 175 IWFQNRRSKFKKLYKNGEVPLEHS-PNNSDSMACNSPPSPALWDTSSHST 223 IWFQN+RSK+KKL K E P + S++ SPP P+LWD T Sbjct: 91 IWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKAGT 140 >gi|14149728 BarH-like homeobox 1 [Homo sapiens] Length = 327 Score = 85.9 bits (211), Expect = 4e-17 Identities = 58/159 (36%), Positives = 78/159 (49%), Gaps = 33/159 (20%) Query: 111 VKEEPEAEVRMVNGKP----KKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQL 166 VKEE + E+ P KK RK RT ++ +QLA L+R F++ +YL++ +R ELAA L Sbjct: 156 VKEEGDREISSSRDSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASL 215 Query: 167 GLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNS-------------DSMACNSPPSP 213 LT TQVK W+QNRR+K+K+ G L + N S S+ N P Sbjct: 216 NLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGA 275 Query: 214 ALWDTSSHSTPAPA----------------RSQLPPPLP 236 AL+ S P PA S+ PPPLP Sbjct: 276 ALYLYRGPSAPPPALQRPLVPRILIHGLQGASEPPPPLP 314 Score = 33.5 bits (75), Expect = 0.22 Identities = 31/94 (32%), Positives = 37/94 (39%), Gaps = 5/94 (5%) Query: 194 PLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARSQLPPPLPYSASPSYLDDPTNS-WY 252 PLE SP + S C+SP SP D TP P + P L P L P S Sbjct: 35 PLELSPRSESSSDCSSPASPGR-DCLETGTPRPGGAS-GPGLDSHLQPGQLSAPAQSRTV 92 Query: 253 HAQNLSGPHLQQQPPQPATLHHASPGPP--PNPG 284 + L L P A ++S G P P PG Sbjct: 93 TSSFLIRDILADCKPLAACAPYSSSGQPAAPEPG 126 >gi|6633798 BarH-like homeobox 2 [Homo sapiens] Length = 279 Score = 82.4 bits (202), Expect = 4e-16 Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 18/171 (10%) Query: 116 EAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKI 175 E+E + KK R+ RTI++ QL L+++FQK +YL+ P+R +LA LGLTQ QVK Sbjct: 120 ESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKT 179 Query: 176 WFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARSQLPP-- 233 W+QNRR K+KK+ G P + P S + ++ A + QL P Sbjct: 180 WYQNRRMKWKKMVLKGGQEAPTKPKGRPKKN-SIPTSEEIEAEEKMNSQAQGQEQLEPSQ 238 Query: 234 ---PLPYSASPSYLDDPTNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPP 281 L + P D P + + P P L S PPP Sbjct: 239 GQEELCEAQEPKARDVPL------------EMAEPPDPPQELPIPSSEPPP 277 >gi|27886557 msh homeobox 2 [Homo sapiens] Length = 267 Score = 81.6 bits (200), Expect = 7e-16 Identities = 51/121 (42%), Positives = 73/121 (60%), Gaps = 4/121 (3%) Query: 125 KPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKF 184 K K RKPRT +++ QL AL+R+F++ QYL++ ERAE ++ L LT+TQVKIWFQNRR+K Sbjct: 138 KHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKA 197 Query: 185 KKLYKN--GEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAP-ARSQLP-PPLPYSAS 240 K+L + ++ + P S + P S L S + P R LP PP+ A+ Sbjct: 198 KRLQEAELEKLKMAAKPMLPSSFSLPFPISSPLQAASIYGASYPFHRPVLPIPPVGLYAT 257 Query: 241 P 241 P Sbjct: 258 P 258 >gi|147901462 brain specific homeobox [Homo sapiens] Length = 233 Score = 79.3 bits (194), Expect = 4e-15 Identities = 55/152 (36%), Positives = 77/152 (50%), Gaps = 19/152 (12%) Query: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174 P + + GK + RK RT++S QL+ L++RF+ +YL+ PER ELA L L++TQVK Sbjct: 96 PHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVK 155 Query: 175 IWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSH-STPAPARSQLPP 233 WFQNRR K KK + + + A + P SP S +T A AR LP Sbjct: 156 TWFQNRRMKHKKQLRKSQ---------DEPKAPDGPESPEGSPRGSEAATAAEARLSLP- 205 Query: 234 PLPYSASPSYLDDPTNS---WYHAQNLSGPHL 262 A P L +P + + SGPH+ Sbjct: 206 -----AGPFVLTEPEDEVDIGDEGELGSGPHV 232 >gi|118582284 msh homeobox 1 [Homo sapiens] Length = 303 Score = 79.0 bits (193), Expect = 5e-15 Identities = 37/63 (58%), Positives = 51/63 (80%) Query: 125 KPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKF 184 K K RKPRT +++ QL AL+R+F++ QYL++ ERAE ++ L LT+TQVKIWFQNRR+K Sbjct: 168 KHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKA 227 Query: 185 KKL 187 K+L Sbjct: 228 KRL 230 >gi|210147470 NK2 transcription factor related, locus 6 [Homo sapiens] Length = 219 Score = 79.0 bits (193), Expect = 5e-15 Identities = 55/145 (37%), Positives = 73/145 (50%), Gaps = 14/145 (9%) Query: 125 KPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKF 184 K ++ RKPR ++S Q+ AL+RRF++ +YL+ PER LA+ L LT TQVKIWFQNRR K Sbjct: 46 KARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKC 105 Query: 185 KKLYKNGEVPLEHSPNNSDSMACNSPPSPAL-WDTSSHSTPAPARSQLPPPL-----PYS 238 K+ ++ + L P +A P L D P P P P PYS Sbjct: 106 KRQRQDKSLELAGHPLTPRRVAV-----PVLVRDGKPCLGPGPGAPAFPSPYSAAVSPYS 160 Query: 239 ASPSYLDDPTNSWY---HAQNLSGP 260 Y P + Y +A SGP Sbjct: 161 CYGGYSGAPYGAGYGTCYAGAPSGP 185 >gi|39930383 BarH-like homeobox 2 [Homo sapiens] Length = 387 Score = 77.4 bits (189), Expect = 1e-14 Identities = 58/177 (32%), Positives = 82/177 (46%), Gaps = 23/177 (12%) Query: 112 KEEPEAEVRMVNGKP----KKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLG 167 KEE + E+ P KK RK RT +S +QL L+R F++ +YL++ +R +LAA L Sbjct: 211 KEEGDREITSSRESPPVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALN 270 Query: 168 LTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACNSPP---SPALWDTSSHSTP 224 LT TQVK W+QNRR+K+K+ G L + N S P P+L + +T Sbjct: 271 LTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYHPSLLGSMDSTTA 330 Query: 225 APARSQLPPPLPYSASPSYLDDPTNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPP 281 A A + + YS S Y P LQ+ +H PG P Sbjct: 331 AAAAAAM-----YS-----------SMYRTPPAPHPQLQRPLVPRVLIHGLGPGGQP 371 >gi|153218470 BarH-like homeobox 1 [Homo sapiens] Length = 254 Score = 76.6 bits (187), Expect = 2e-14 Identities = 34/67 (50%), Positives = 49/67 (73%) Query: 125 KPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKF 184 K KK R+ RT+++ QL L++RF+K +YL+ P+R +LA LGL+Q QVK W+QNRR K+ Sbjct: 138 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKW 197 Query: 185 KKLYKNG 191 KK+ G Sbjct: 198 KKIVLQG 204 >gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens] Length = 324 Score = 76.3 bits (186), Expect = 3e-14 Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 21/160 (13%) Query: 102 PLPAQDPVSVKEEPEAEVRMVN-----------GKPKKVRKPRTIYSSYQLAALQRRFQK 150 P PA+DP + K+E A + V + ++ RKPR ++S Q+ L+RRF++ Sbjct: 100 PDPAKDPRAEKKELCALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQ 159 Query: 151 AQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACN-- 208 +YL+ PER +LA+ L LT TQVKIWFQNRR K K+ ++ + L P A Sbjct: 160 QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIA 219 Query: 209 -----SPPSPALWDTSSHSTPAPARSQLPPPLPYSASPSY 243 P L D++ + APA P Y+A P+Y Sbjct: 220 VPVLVRDGKPCLGDSAPY---APAYGVGLNPYGYNAYPAY 256 >gi|148746211 NK2 transcription factor related, locus 3 [Homo sapiens] Length = 364 Score = 76.3 bits (186), Expect = 3e-14 Identities = 38/76 (50%), Positives = 53/76 (69%), Gaps = 1/76 (1%) Query: 125 KPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKF 184 KP+ RKPR ++S Q+ L+RRF++ +YL+ PER LA+ L LT TQVKIWFQNRR K Sbjct: 144 KPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKC 203 Query: 185 KKLYKNGEVPL-EHSP 199 K+ ++ + L H+P Sbjct: 204 KRQRQDKSLELGAHAP 219 >gi|24497515 homeobox A3 isoform b [Homo sapiens] Length = 285 Score = 75.9 bits (185), Expect = 4e-14 Identities = 54/154 (35%), Positives = 71/154 (46%), Gaps = 22/154 (14%) Query: 130 RKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYK 189 ++ RT Y+S QL L++ F +YL P R E+A L LT+ Q+KIWFQNRR K+KK K Sbjct: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93 Query: 190 NGEVPLEHSPNNSDSMACNSPPSPALWDTSSHS--TPAPARSQLPPPLPYSASPSYLDDP 247 G+ L S S S + PP + S HS P Q PPP +Y P Sbjct: 94 -GKGMLTSSGGQSPSRS-PVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPP 151 Query: 248 TNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPP 281 + PA+L +P PPP Sbjct: 152 AS------------------YPASLPSCAPPPPP 167 >gi|24497513 homeobox A3 isoform a [Homo sapiens] Length = 443 Score = 75.9 bits (185), Expect = 4e-14 Identities = 54/154 (35%), Positives = 71/154 (46%), Gaps = 22/154 (14%) Query: 130 RKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYK 189 ++ RT Y+S QL L++ F +YL P R E+A L LT+ Q+KIWFQNRR K+KK K Sbjct: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251 Query: 190 NGEVPLEHSPNNSDSMACNSPPSPALWDTSSHS--TPAPARSQLPPPLPYSASPSYLDDP 247 G+ L S S S + PP + S HS P Q PPP +Y P Sbjct: 252 -GKGMLTSSGGQSPSRS-PVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPP 309 Query: 248 TNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPP 281 + PA+L +P PPP Sbjct: 310 AS------------------YPASLPSCAPPPPP 325 >gi|13562112 homeobox A3 isoform a [Homo sapiens] Length = 443 Score = 75.9 bits (185), Expect = 4e-14 Identities = 54/154 (35%), Positives = 71/154 (46%), Gaps = 22/154 (14%) Query: 130 RKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYK 189 ++ RT Y+S QL L++ F +YL P R E+A L LT+ Q+KIWFQNRR K+KK K Sbjct: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251 Query: 190 NGEVPLEHSPNNSDSMACNSPPSPALWDTSSHS--TPAPARSQLPPPLPYSASPSYLDDP 247 G+ L S S S + PP + S HS P Q PPP +Y P Sbjct: 252 -GKGMLTSSGGQSPSRS-PVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPP 309 Query: 248 TNSWYHAQNLSGPHLQQQPPQPATLHHASPGPPP 281 + PA+L +P PPP Sbjct: 310 AS------------------YPASLPSCAPPPPP 325 >gi|126116581 retina and anterior neural fold homeobox [Homo sapiens] Length = 346 Score = 73.9 bits (180), Expect = 1e-13 Identities = 70/225 (31%), Positives = 100/225 (44%), Gaps = 28/225 (12%) Query: 79 AYSPKSEYTYGASY--RQYGAYREQPLPAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIY 136 A +P EY Y ++ G R P P + EA++ KK R+ RT + Sbjct: 88 APAPAPEYEAPRPYCPKEPGEARPSPGLPVGPAT----GEAKLSEEEQPKKKHRRNRTTF 143 Query: 137 SSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYK--NGEVP 194 ++YQL L+R F+K+ Y + R ELA ++ L + +V++WFQNRR+K+++ K + Sbjct: 144 TTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMK 203 Query: 195 LEHSPNNSDSMACNSPPSPAL----WDTSSHSTPA----PARSQLPPPLPYSASPSYLDD 246 L+ SP S S SPPS L S PA P S L PPLP + L Sbjct: 204 LQDSPLLSFS---RSPPSATLSPLGAGPGSGGGPAGGALPLESWLGPPLP-GGGATALQS 259 Query: 247 PTNSWYHAQNLSGPHLQQQPPQP--------ATLHHASPGPPPNP 283 AQ+L + PP P L +P PP P Sbjct: 260 LPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPPPSYP 304 >gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] Length = 653 Score = 73.2 bits (178), Expect = 3e-13 Identities = 55/180 (30%), Positives = 74/180 (41%), Gaps = 19/180 (10%) Query: 123 NGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRS 182 + K K R+ RT ++ QL AL+ +F+ +YL++ ER LA L LT+TQVKIWFQNRR+ Sbjct: 91 DSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRT 150 Query: 183 KFKKLYKNGEVPLEHSPNNSDSMACN---------SP--PSPALWDTSSHSTPAPARSQL 231 K+KK + SP PSP + PA + Sbjct: 151 KWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHG 210 Query: 232 PPPLPYSASPSYLDDPT--------NSWYHAQNLSGPHLQQQPPQPATLHHASPGPPPNP 283 P L +A +L P + Y A PHL P P P P P Sbjct: 211 PGGLVCAAQLPFLSSPAVLSPFVLGSQTYGAPAFYAPHLLSPVPLXXXXXXXPPRPLPGP 270 >gi|5031761 homeobox A1 isoform a [Homo sapiens] Length = 335 Score = 72.8 bits (177), Expect = 3e-13 Identities = 64/205 (31%), Positives = 89/205 (43%), Gaps = 26/205 (12%) Query: 41 GYYSAPQ---HDYYSGQPYGQTVNPYTYHHQFNLNGLAGTGAYSPKSEYTYGASYRQY-- 95 G S+P H ++ G G +P HH + + A S AS+++ Sbjct: 133 GNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSPLHASHQEACR 192 Query: 96 GAYREQPLPAQ--DPVSVKEEPEAEVRMVN----GKPKKVRKPRTIYSSYQLAALQRRFQ 149 E PAQ D + VK P ++ G+P VR T +++ QL L++ F Sbjct: 193 SPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVR---TNFTTKQLTELEKEFH 249 Query: 150 KAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPL------------EH 197 +YL R E+AA L L +TQVKIWFQNRR K KK K G +P+ E Sbjct: 250 FNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATPPGNDEKAEE 309 Query: 198 SPNNSDSMACNSPPSPALWDTSSHS 222 S S S C P + DT + S Sbjct: 310 SSEKSSSSPCVPSPGSSTSDTLTTS 334 >gi|70608170 H6 family homeobox 2 [Homo sapiens] Length = 273 Score = 72.4 bits (176), Expect = 4e-13 Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 6/169 (3%) Query: 73 GLAGTGAYSPKSEYTYGASYRQYGAYREQPLPAQDPVSVKEEP-EAEVRMVNGKPKKVRK 131 G G+G + S+ + +E+ LPA P E P + G KK K Sbjct: 94 GSGGSGPGGLERTPFLSPSHSDFKEEKERLLPAGSPSPGSERPRDGGAERQAGAAKK--K 151 Query: 132 PRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNG 191 RT++S Q+ L+ F +YL+ ERA LA+ L LT+TQVK WFQNRR+K+K+ + Sbjct: 152 TRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKR-QLSA 210 Query: 192 EVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARSQLPPPLPYSAS 240 E+ + + S + P D+S P P P PL Y S Sbjct: 211 ELEAANMAHASAQTLVSMP--LVFRDSSLLRVPVPRSLAFPAPLYYPGS 257 >gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens] Length = 273 Score = 72.4 bits (176), Expect = 4e-13 Identities = 49/137 (35%), Positives = 68/137 (49%), Gaps = 23/137 (16%) Query: 56 YGQTVNPYTYHH------QFNLNGLAGTGAYSPKSEYTYGASYRQYGAYREQPLPAQDPV 109 Y + NPYT Q++L+GLA GA + + +P + P Sbjct: 66 YDSSDNPYTRWLASTEGLQYSLHGLAA------------GAPPQDSSSKSPEPSADESPD 113 Query: 110 SVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLT 169 + KE P G K RK R ++S Q L+RRF++ +YL+ PER LA+ + LT Sbjct: 114 NDKETPGG-----GGDAGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLT 168 Query: 170 QTQVKIWFQNRRSKFKK 186 TQVKIWFQN R K K+ Sbjct: 169 PTQVKIWFQNHRYKMKR 185 >gi|226437602 NK1 homeobox 2 [Homo sapiens] Length = 310 Score = 72.0 bits (175), Expect = 6e-13 Identities = 36/83 (43%), Positives = 50/83 (60%) Query: 104 PAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELA 163 P + P P R + K R+ RT ++ QL AL+ +F+ +YL++ ER LA Sbjct: 138 PVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLA 197 Query: 164 AQLGLTQTQVKIWFQNRRSKFKK 186 L LT+TQVKIWFQNRR+K+KK Sbjct: 198 LSLSLTETQVKIWFQNRRTKWKK 220 >gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] Length = 332 Score = 72.0 bits (175), Expect = 6e-13 Identities = 36/83 (43%), Positives = 50/83 (60%) Query: 104 PAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELA 163 P + P P R + K R+ RT ++ QL AL+ +F+ +YL++ ER LA Sbjct: 160 PVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLA 219 Query: 164 AQLGLTQTQVKIWFQNRRSKFKK 186 L LT+TQVKIWFQNRR+K+KK Sbjct: 220 LSLSLTETQVKIWFQNRRTKWKK 242 >gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] Length = 332 Score = 72.0 bits (175), Expect = 6e-13 Identities = 36/83 (43%), Positives = 50/83 (60%) Query: 104 PAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELA 163 P + P P R + K R+ RT ++ QL AL+ +F+ +YL++ ER LA Sbjct: 160 PVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLA 219 Query: 164 AQLGLTQTQVKIWFQNRRSKFKK 186 L LT+TQVKIWFQNRR+K+KK Sbjct: 220 LSLSLTETQVKIWFQNRRTKWKK 242 >gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] Length = 332 Score = 72.0 bits (175), Expect = 6e-13 Identities = 36/83 (43%), Positives = 50/83 (60%) Query: 104 PAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELA 163 P + P P R + K R+ RT ++ QL AL+ +F+ +YL++ ER LA Sbjct: 160 PVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLA 219 Query: 164 AQLGLTQTQVKIWFQNRRSKFKK 186 L LT+TQVKIWFQNRR+K+KK Sbjct: 220 LSLSLTETQVKIWFQNRRTKWKK 242 >gi|7110735 ventral anterior homeobox 2 [Homo sapiens] Length = 290 Score = 72.0 bits (175), Expect = 6e-13 Identities = 72/219 (32%), Positives = 101/219 (46%), Gaps = 25/219 (11%) Query: 74 LAGTGAYSPKSEYTYGASYRQYGAYRE-QPLPAQDP----VSVKEEPEAEVRMVNGKPKK 128 +AGT A SP A R+ GA + QP P + + V++ +V K Sbjct: 46 VAGTSASSP-------AGSRESGADSDGQPGPGEADHCRRILVRDAKGTIREIVLPKGLD 98 Query: 129 VRKP---RTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFK 185 + +P RT +++ QL L+ FQ+ QY+ ER ELA QL L++TQVK+WFQNRR+K K Sbjct: 99 LDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQK 158 Query: 186 KLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPARSQLP-----PPLPYSAS 240 K+ LE ++S S A + L + + A S L P LP S Sbjct: 159 ---KDQSRDLEKRASSSASEAFATSNILRLLEQGRLLSVPRAPSLLALTPSLPGLPASHR 215 Query: 241 PSYLDDPTNSWYHAQNLSGPHLQQ--QPPQPATLHHASP 277 + L DP NS LS PP PA ++P Sbjct: 216 GTSLGDPRNSSPRLNPLSSASASPPLPPPLPAVCFSSAP 254 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.310 0.128 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,936,755 Number of Sequences: 37866 Number of extensions: 900162 Number of successful extensions: 6094 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 322 Number of HSP's successfully gapped in prelim test: 410 Number of HSP's that attempted gapping in prelim test: 4631 Number of HSP's gapped (non-prelim): 1693 length of query: 287 length of database: 18,247,518 effective HSP length: 101 effective length of query: 186 effective length of database: 14,423,052 effective search space: 2682687672 effective search space used: 2682687672 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.