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Search of human proteins with 48717426
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|48717426 hypothetical protein LOC401565 [Homo sapiens]
(317 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|48717426 hypothetical protein LOC401565 [Homo sapiens] 686 0.0
gi|153791167 hypothetical protein LOC730112 [Homo sapiens] 65 1e-10
gi|93277074 ribonuclease P 25kDa subunit [Homo sapiens] 39 0.008
gi|150417989 cyclin K isoform 1 [Homo sapiens] 35 0.067
gi|73760403 Kruppel-like factor 10 isoform b [Homo sapiens] 34 0.15
gi|5032177 Kruppel-like factor 10 isoform a [Homo sapiens] 34 0.15
gi|58530845 zyxin [Homo sapiens] 34 0.20
gi|4508047 zyxin [Homo sapiens] 34 0.20
gi|64084766 fidgetin [Homo sapiens] 33 0.25
gi|192807332 arsenate resistance protein 2 isoform c [Homo sapiens] 33 0.33
gi|58331218 arsenate resistance protein 2 isoform a [Homo sapiens] 33 0.33
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 33 0.43
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 33 0.43
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 33 0.43
gi|39652628 oxidative stress-associated Src activator [Homo sapi... 33 0.43
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 32 0.57
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 32 0.57
gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapi... 32 0.57
gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sap... 32 0.57
gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapi... 32 0.57
gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapi... 32 0.57
gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapi... 32 0.57
gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapi... 32 0.57
gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapi... 32 0.57
gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapi... 32 0.57
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 32 0.57
gi|116517292 cut-like 2 [Homo sapiens] 32 0.74
gi|38683827 ADAM metallopeptidase with thrombospondin type 1 mot... 32 0.74
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 32 0.97
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 32 0.97
>gi|48717426 hypothetical protein LOC401565 [Homo sapiens]
Length = 317
Score = 686 bits (1769), Expect = 0.0
Identities = 317/317 (100%), Positives = 317/317 (100%)
Query: 1 MTTTQKHDLFTPEPHYVPGYAGFFPQLRYQVGNTYGRTTGQLLTDPSVQKSPCSVLSPMS 60
MTTTQKHDLFTPEPHYVPGYAGFFPQLRYQVGNTYGRTTGQLLTDPSVQKSPCSVLSPMS
Sbjct: 1 MTTTQKHDLFTPEPHYVPGYAGFFPQLRYQVGNTYGRTTGQLLTDPSVQKSPCSVLSPMS 60
Query: 61 KPKFIEDFSQSKPPRVPCQDLTEPYIPHYTSLKPSKNFEILGQLPPLEVDAQEPPGVENI 120
KPKFIEDFSQSKPPRVPCQDLTEPYIPHYTSLKPSKNFEILGQLPPLEVDAQEPPGVENI
Sbjct: 61 KPKFIEDFSQSKPPRVPCQDLTEPYIPHYTSLKPSKNFEILGQLPPLEVDAQEPPGVENI 120
Query: 121 PRQILLPAGFTPDTPHPPCPPGRKGDSRDLGHPVYGEEAWKSATPVCEAPRQHQLYHCQR 180
PRQILLPAGFTPDTPHPPCPPGRKGDSRDLGHPVYGEEAWKSATPVCEAPRQHQLYHCQR
Sbjct: 121 PRQILLPAGFTPDTPHPPCPPGRKGDSRDLGHPVYGEEAWKSATPVCEAPRQHQLYHCQR 180
Query: 181 DEYPPPARRQQETLDVGSFQRLPQLDHPNLIQRKAISGYAGFIPRFTWVMGLNYRDGVMQ 240
DEYPPPARRQQETLDVGSFQRLPQLDHPNLIQRKAISGYAGFIPRFTWVMGLNYRDGVMQ
Sbjct: 181 DEYPPPARRQQETLDVGSFQRLPQLDHPNLIQRKAISGYAGFIPRFTWVMGLNYRDGVMQ 240
Query: 241 AMDEFDKSQFLFRNPHCDLGEKLPGTHWPSNHIYSSQGLIPFYMGFIPAMQDNYALTFGN 300
AMDEFDKSQFLFRNPHCDLGEKLPGTHWPSNHIYSSQGLIPFYMGFIPAMQDNYALTFGN
Sbjct: 241 AMDEFDKSQFLFRNPHCDLGEKLPGTHWPSNHIYSSQGLIPFYMGFIPAMQDNYALTFGN 300
Query: 301 STRRAYWKEWAKRNHTL 317
STRRAYWKEWAKRNHTL
Sbjct: 301 STRRAYWKEWAKRNHTL 317
>gi|153791167 hypothetical protein LOC730112 [Homo sapiens]
Length = 216
Score = 64.7 bits (156), Expect = 1e-10
Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 14 PHYVPGYAGFFPQLRYQVGNTYGRTTGQLLTDPSVQKSP---CSVLSPMSKPKFIEDFSQ 70
PHY+PGY G P LR+ VG TYG+ TGQLL P P ++L P+ P+ E +
Sbjct: 16 PHYIPGYTGHCPLLRFSVGQTYGQVTGQLLRGPPGLAWPPVHRTLLPPIRPPRSPEVPRE 75
Query: 71 SKPPRVPCQDLTEPYIPHYTSLKPSKNFEILGQLPPLEVDA-------QEPPGVENIPRQ 123
S P R + L+ IP YT P F + +A E G E +P++
Sbjct: 76 SLPVRRGQERLSSSMIPGYTGFVPRAQFIFAKNCSQVWAEALSDFTHLHEKQGSEELPKE 135
>gi|93277074 ribonuclease P 25kDa subunit [Homo sapiens]
Length = 199
Score = 38.5 bits (88), Expect = 0.008
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 28/149 (18%)
Query: 25 PQLRYQVGNTYGRTTGQLLTDPSVQKSPCSVLSPMSKPKF--IEDFSQSKPPRVPCQDLT 82
P R V + GR T + +T + K + L +++ ++ + + QS PP P Q T
Sbjct: 60 PATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPG-PTQGQT 118
Query: 83 EPYIPHYTSLKPSKNFEILGQLPPLEV----DAQEPPGVENIPRQILLPAGFTPDTPHP- 137
+P+ + +L +P L + DA +P RQ G+ P PHP
Sbjct: 119 PG--------EPAASLSVLKNVPGLAILLSKDALDP-------RQ----PGYQPPNPHPG 159
Query: 138 -PCPPGRKGDSRDLGHPVYGEEAWKSATP 165
PP R LG P GE + K + P
Sbjct: 160 PSSPPAAPASKRSLGEPAAGEGSAKRSQP 188
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 35.4 bits (80), Expect = 0.067
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 62 PKFIEDFSQSKPPRVPCQDLTEPYIP--HYTSLKPSKNFEILGQL-PPLEVDAQEPPGVE 118
PK ++ PP++P + T P +P H + LG+ PP VDA + P V+
Sbjct: 341 PKEENKAAEPPPPKIPKIETTHPPLPPAHPPPDRKPPLAAALGEAEPPGPVDATDLPKVQ 400
Query: 119 NIPRQILLPAGFTPDTPHPPCPP 141
P P P PH P PP
Sbjct: 401 IPPPAHPAPVHQPPPLPHRPPPP 423
Score = 33.5 bits (75), Expect = 0.25
Identities = 41/155 (26%), Positives = 57/155 (36%), Gaps = 23/155 (14%)
Query: 38 TTGQLLTDPSVQKSPCSVLSPMSKPKFIEDFSQ--SKPPRVPCQDLTEPYIPHYTSLKPS 95
T QL PS+Q +P S+P + SQ K P+ P Q P S +PS
Sbjct: 269 TPHQLQQPPSLQPTPQVPQVQQSQPSQSSEPSQPQQKDPQQPAQQQQPAQQPKKPSPQPS 328
Query: 96 KNFEILGQL---PPLEVDAQEPPGVENIPRQILLPAGFTPDTPHPPCPPGRKGDSRDLGH 152
++ + P E A EPP + IP+ +T HPP PP R
Sbjct: 329 SPRQVKRAVVVSPKEENKAAEPPPPK-IPKI---------ETTHPPLPPAHPPPDR---- 374
Query: 153 PVYGEEAWKSATPVCEAPRQHQLYHCQRDEYPPPA 187
+ +A E P + + PPPA
Sbjct: 375 ----KPPLAAALGEAEPPGPVDATDLPKVQIPPPA 405
>gi|73760403 Kruppel-like factor 10 isoform b [Homo sapiens]
Length = 469
Score = 34.3 bits (77), Expect = 0.15
Identities = 33/129 (25%), Positives = 46/129 (35%), Gaps = 16/129 (12%)
Query: 27 LRYQVGNTYGRTTGQLLTDPSVQKSPCSVLSPMSKP--------------KFIEDFSQSK 72
L YQ N++ R T L + + + PC+ +SP + DFS
Sbjct: 167 LNYQ-NNSFRRRT-HLNVEAARKNIPCAAVSPNRSKCERNTVADVDEKASAALYDFSVPS 224
Query: 73 PPRVPCQDLTEPYIPHYTSLKPSKNFEILGQLPPLEVDAQEPPGVENIPRQILLPAGFTP 132
V C+ P P S+ S G +PP+ V Q P N P + P
Sbjct: 225 SETVICRSQPAPVSPQQKSVLVSPPAVSAGGVPPMPVICQMVPLPANNPVVTTVVPSTPP 284
Query: 133 DTPHPPCPP 141
P CPP
Sbjct: 285 SQPPAVCPP 293
>gi|5032177 Kruppel-like factor 10 isoform a [Homo sapiens]
Length = 480
Score = 34.3 bits (77), Expect = 0.15
Identities = 33/129 (25%), Positives = 46/129 (35%), Gaps = 16/129 (12%)
Query: 27 LRYQVGNTYGRTTGQLLTDPSVQKSPCSVLSPMSKP--------------KFIEDFSQSK 72
L YQ N++ R T L + + + PC+ +SP + DFS
Sbjct: 178 LNYQ-NNSFRRRT-HLNVEAARKNIPCAAVSPNRSKCERNTVADVDEKASAALYDFSVPS 235
Query: 73 PPRVPCQDLTEPYIPHYTSLKPSKNFEILGQLPPLEVDAQEPPGVENIPRQILLPAGFTP 132
V C+ P P S+ S G +PP+ V Q P N P + P
Sbjct: 236 SETVICRSQPAPVSPQQKSVLVSPPAVSAGGVPPMPVICQMVPLPANNPVVTTVVPSTPP 295
Query: 133 DTPHPPCPP 141
P CPP
Sbjct: 296 SQPPAVCPP 304
>gi|58530845 zyxin [Homo sapiens]
Length = 572
Score = 33.9 bits (76), Expect = 0.20
Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 28/151 (18%)
Query: 69 SQSKP-PRVPC--QDLTEPYIPHYTSLKPSKNFEILGQLPPLEVDAQEPPGVENIPRQIL 125
S S+P P+VP Q T+ ++ KP + Q P+ + +P G P
Sbjct: 204 SSSQPLPQVPAPAQSQTQFHVQPQPQPKPQVQLHVQSQTQPVSLANTQPRGP---PASSP 260
Query: 126 LPA-GFTPDTP--------HPPCPPGRKGD--SRDLGHPVYGEEAWKSATPVCEAP---- 170
PA F+P TP P PG G ++ LGHP EA + T + P
Sbjct: 261 APAPKFSPVTPKFTPVASKFSPGAPGGSGSQPNQKLGHP----EALSAGTGSPQPPSFTY 316
Query: 171 -RQHQLYHCQRDEY--PPPARRQQETLDVGS 198
+Q + Q ++ PPPA+ Q + G+
Sbjct: 317 AQQREKPRVQEKQHPVPPPAQNQNQVRSPGA 347
>gi|4508047 zyxin [Homo sapiens]
Length = 572
Score = 33.9 bits (76), Expect = 0.20
Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 28/151 (18%)
Query: 69 SQSKP-PRVPC--QDLTEPYIPHYTSLKPSKNFEILGQLPPLEVDAQEPPGVENIPRQIL 125
S S+P P+VP Q T+ ++ KP + Q P+ + +P G P
Sbjct: 204 SSSQPLPQVPAPAQSQTQFHVQPQPQPKPQVQLHVQSQTQPVSLANTQPRGP---PASSP 260
Query: 126 LPA-GFTPDTP--------HPPCPPGRKGD--SRDLGHPVYGEEAWKSATPVCEAP---- 170
PA F+P TP P PG G ++ LGHP EA + T + P
Sbjct: 261 APAPKFSPVTPKFTPVASKFSPGAPGGSGSQPNQKLGHP----EALSAGTGSPQPPSFTY 316
Query: 171 -RQHQLYHCQRDEY--PPPARRQQETLDVGS 198
+Q + Q ++ PPPA+ Q + G+
Sbjct: 317 AQQREKPRVQEKQHPVPPPAQNQNQVRSPGA 347
>gi|64084766 fidgetin [Homo sapiens]
Length = 759
Score = 33.5 bits (75), Expect = 0.25
Identities = 34/127 (26%), Positives = 43/127 (33%), Gaps = 20/127 (15%)
Query: 12 PEPHYVPGYAGFFPQLRYQVGNTYGRTTGQLLTDPSVQKSPCSVLSPMSKPKFIEDFSQS 71
P Y PGY G + Y S Q +P ++ SP P Q
Sbjct: 181 PSQEYAPGYNGSYLHSTY-----------------SSQPAP-ALPSPHPSPLHSSGLLQP 222
Query: 72 KPPRVPCQDLTEPYIPHYTSLKPSKNFEILGQLPPLEVDAQEPPGVENIPRQILLPAGFT 131
PP P L Y + TS S ++ P V + PG P LP+G
Sbjct: 223 PPPPPPPPALVPGY--NGTSNLSSYSYPSASYPPQTAVGSGYSPGGAPPPPSAYLPSGIP 280
Query: 132 PDTPHPP 138
TP PP
Sbjct: 281 APTPLPP 287
>gi|192807332 arsenate resistance protein 2 isoform c [Homo sapiens]
Length = 875
Score = 33.1 bits (74), Expect = 0.33
Identities = 30/90 (33%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 97 NFEILGQLPPL-EVDAQEPPGVENIPRQILLPAGFTPDTPHPPCPPGRKGDSRDLGHPV- 154
NF + P L E+ +PPG P QIL P G TP P+P P P+
Sbjct: 751 NFLTDAKRPALPEIKPAQPPG----PAQIL-PPGLTPGLPYPHQTPQGLMPYGQPRPPIL 805
Query: 155 -YGEEAWKSATPVCEAPRQHQLYHCQRDEY 183
YG A + A P P H Y R Y
Sbjct: 806 GYGAGAVRPAVPTGGPPYPHAPYGAGRGNY 835
>gi|58331218 arsenate resistance protein 2 isoform a [Homo sapiens]
Length = 876
Score = 33.1 bits (74), Expect = 0.33
Identities = 30/90 (33%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 97 NFEILGQLPPL-EVDAQEPPGVENIPRQILLPAGFTPDTPHPPCPPGRKGDSRDLGHPV- 154
NF + P L E+ +PPG P QIL P G TP P+P P P+
Sbjct: 752 NFLTDAKRPALPEIKPAQPPG----PAQIL-PPGLTPGLPYPHQTPQGLMPYGQPRPPIL 806
Query: 155 -YGEEAWKSATPVCEAPRQHQLYHCQRDEY 183
YG A + A P P H Y R Y
Sbjct: 807 GYGAGAVRPAVPTGGPPYPHAPYGAGRGNY 836
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 32.7 bits (73), Expect = 0.43
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 11 TPEPHYVPGYAGFFPQLRYQVGNTY---GRTTGQLLTDPSVQKSPCSVLSPMSKPKFIED 67
+P+P P + +++ N + G + L P ++P L P +P +
Sbjct: 358 SPQPRGAPRQRPIPLSMIFKLQNAFWEHGASRAMLPGSPLFTRAPPPKLQPQPQP---QP 414
Query: 68 FSQSKP-PRVPCQDLTEPYIPHYTSLKPSKNFEILGQLPPLEVDAQEP-PGVENIPRQIL 125
QS+P P++P Q T+P P P + + + + PP EP P +E + +L
Sbjct: 415 QPQSQPQPQLPPQPQTQPQTPTPAPQHPQQTWPPVNEGPPKPPTELEPEPEIEGLLTPVL 474
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 32.7 bits (73), Expect = 0.43
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 11 TPEPHYVPGYAGFFPQLRYQVGNTY---GRTTGQLLTDPSVQKSPCSVLSPMSKPKFIED 67
+P+P P + +++ N + G + L P ++P L P +P +
Sbjct: 358 SPQPRGAPRQRPIPLSMIFKLQNAFWEHGASRAMLPGSPLFTRAPPPKLQPQPQP---QP 414
Query: 68 FSQSKP-PRVPCQDLTEPYIPHYTSLKPSKNFEILGQLPPLEVDAQEP-PGVENIPRQIL 125
QS+P P++P Q T+P P P + + + + PP EP P +E + +L
Sbjct: 415 QPQSQPQPQLPPQPQTQPQTPTPAPQHPQQTWPPVNEGPPKPPTELEPEPEIEGLLTPVL 474
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 32.7 bits (73), Expect = 0.43
Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 102 GQLPPLEVDAQEPPGVENIPRQILLPAGF-TPDTPHPPCPPGRKGDSRDLGHPV 154
GQ V Q PPG +P P GF P P PP PPG G LG V
Sbjct: 1065 GQKGETVVGPQGPPGAPGLPG----PPGFGRPGDPGPPGPPGPPGPPAILGAAV 1114
>gi|39652628 oxidative stress-associated Src activator [Homo
sapiens]
Length = 1118
Score = 32.7 bits (73), Expect = 0.43
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 87 PHYTSLKPSKNFEILGQLPPLEVDAQEPPGVENIPRQILLPAGFTPDTPHPPCPPGRKGD 146
PHY + +P F + G +PP PP + NIP+ L P P P PG+
Sbjct: 340 PHYLAARPGP-FGMPGMVPP-----HVPPQMLNIPQTSLQAKPVAPQVPSPGGAPGQGPY 393
Query: 147 SRDLGHP 153
L P
Sbjct: 394 PYSLSEP 400
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 32.3 bits (72), Expect = 0.57
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 13/59 (22%)
Query: 99 EILGQLPPLEVDAQE----------PPGVENIPRQILLPAGFT--PDTPHPPCPPGRKG 145
EILG +P + + + PPG+ + + P GFT P P PP PPG KG
Sbjct: 161 EILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVG-PPGFTGPPGPPGPPGPPGEKG 218
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 32.3 bits (72), Expect = 0.57
Identities = 31/98 (31%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
Query: 77 PCQDLTEPYIPHYTSLKPSKNFEILGQLPPLEVDAQEPPGVENIPRQILLPAGFTPDTPH 136
P LT P +S+ + Q PP E + +PP P Q PA P
Sbjct: 3316 PPAQLTHTQFPAASSVGLPSRTKTAAQGPPPEGEPLQPPQ----PVQSTQPA-----QPA 3366
Query: 137 PPCPP---GRKGDSRDLGHPVYGEEAWKSATPVCEAPR 171
PPCPP G+ G P +EA + T V E PR
Sbjct: 3367 PPCPPSQLGQPGQPPSSKMPQVSQEAKGTQTGV-EQPR 3403
>gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapiens]
Length = 1955
Score = 32.3 bits (72), Expect = 0.57
Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 18/96 (18%)
Query: 46 PSVQKSPCSVLSPMSKPKFIEDFSQSKPPRVPCQDLTEPYIPHYTSLKPSKNFEILGQLP 105
P SP +P++ P I FS PP P P IP L P F
Sbjct: 1752 PISPPSPPPAPAPLAPPPDISPFSLFCPPPSP------PSIP--LPLPPPTFF------- 1796
Query: 106 PLEVDAQEPPGVENIPRQILLPAGFTPDTPHPPCPP 141
PL V PP +P P P P PCPP
Sbjct: 1797 PLSVSTSGPPTPPLLPP---FPTPLPPPPPSIPCPP 1829
>gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sapiens]
Length = 1932
Score = 32.3 bits (72), Expect = 0.57
Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 18/96 (18%)
Query: 46 PSVQKSPCSVLSPMSKPKFIEDFSQSKPPRVPCQDLTEPYIPHYTSLKPSKNFEILGQLP 105
P SP +P++ P I FS PP P P IP L P F
Sbjct: 1729 PISPPSPPPAPAPLAPPPDISPFSLFCPPPSP------PSIP--LPLPPPTFF------- 1773
Query: 106 PLEVDAQEPPGVENIPRQILLPAGFTPDTPHPPCPP 141
PL V PP +P P P P PCPP
Sbjct: 1774 PLSVSTSGPPTPPLLPP---FPTPLPPPPPSIPCPP 1806
>gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapiens]
Length = 1935
Score = 32.3 bits (72), Expect = 0.57
Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 18/96 (18%)
Query: 46 PSVQKSPCSVLSPMSKPKFIEDFSQSKPPRVPCQDLTEPYIPHYTSLKPSKNFEILGQLP 105
P SP +P++ P I FS PP P P IP L P F
Sbjct: 1732 PISPPSPPPAPAPLAPPPDISPFSLFCPPPSP------PSIP--LPLPPPTFF------- 1776
Query: 106 PLEVDAQEPPGVENIPRQILLPAGFTPDTPHPPCPP 141
PL V PP +P P P P PCPP
Sbjct: 1777 PLSVSTSGPPTPPLLPP---FPTPLPPPPPSIPCPP 1809
>gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapiens]
Length = 1915
Score = 32.3 bits (72), Expect = 0.57
Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 18/96 (18%)
Query: 46 PSVQKSPCSVLSPMSKPKFIEDFSQSKPPRVPCQDLTEPYIPHYTSLKPSKNFEILGQLP 105
P SP +P++ P I FS PP P P IP L P F
Sbjct: 1712 PISPPSPPPAPAPLAPPPDISPFSLFCPPPSP------PSIP--LPLPPPTFF------- 1756
Query: 106 PLEVDAQEPPGVENIPRQILLPAGFTPDTPHPPCPP 141
PL V PP +P P P P PCPP
Sbjct: 1757 PLSVSTSGPPTPPLLPP---FPTPLPPPPPSIPCPP 1789
>gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapiens]
Length = 1952
Score = 32.3 bits (72), Expect = 0.57
Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 18/96 (18%)
Query: 46 PSVQKSPCSVLSPMSKPKFIEDFSQSKPPRVPCQDLTEPYIPHYTSLKPSKNFEILGQLP 105
P SP +P++ P I FS PP P P IP L P F
Sbjct: 1749 PISPPSPPPAPAPLAPPPDISPFSLFCPPPSP------PSIP--LPLPPPTFF------- 1793
Query: 106 PLEVDAQEPPGVENIPRQILLPAGFTPDTPHPPCPP 141
PL V PP +P P P P PCPP
Sbjct: 1794 PLSVSTSGPPTPPLLPP---FPTPLPPPPPSIPCPP 1826
>gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapiens]
Length = 1886
Score = 32.3 bits (72), Expect = 0.57
Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 18/96 (18%)
Query: 46 PSVQKSPCSVLSPMSKPKFIEDFSQSKPPRVPCQDLTEPYIPHYTSLKPSKNFEILGQLP 105
P SP +P++ P I FS PP P P IP L P F
Sbjct: 1683 PISPPSPPPAPAPLAPPPDISPFSLFCPPPSP------PSIP--LPLPPPTFF------- 1727
Query: 106 PLEVDAQEPPGVENIPRQILLPAGFTPDTPHPPCPP 141
PL V PP +P P P P PCPP
Sbjct: 1728 PLSVSTSGPPTPPLLPP---FPTPLPPPPPSIPCPP 1760
>gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapiens]
Length = 1957
Score = 32.3 bits (72), Expect = 0.57
Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 18/96 (18%)
Query: 46 PSVQKSPCSVLSPMSKPKFIEDFSQSKPPRVPCQDLTEPYIPHYTSLKPSKNFEILGQLP 105
P SP +P++ P I FS PP P P IP L P F
Sbjct: 1754 PISPPSPPPAPAPLAPPPDISPFSLFCPPPSP------PSIP--LPLPPPTFF------- 1798
Query: 106 PLEVDAQEPPGVENIPRQILLPAGFTPDTPHPPCPP 141
PL V PP +P P P P PCPP
Sbjct: 1799 PLSVSTSGPPTPPLLPP---FPTPLPPPPPSIPCPP 1831
>gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapiens]
Length = 1962
Score = 32.3 bits (72), Expect = 0.57
Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 18/96 (18%)
Query: 46 PSVQKSPCSVLSPMSKPKFIEDFSQSKPPRVPCQDLTEPYIPHYTSLKPSKNFEILGQLP 105
P SP +P++ P I FS PP P P IP L P F
Sbjct: 1759 PISPPSPPPAPAPLAPPPDISPFSLFCPPPSP------PSIP--LPLPPPTFF------- 1803
Query: 106 PLEVDAQEPPGVENIPRQILLPAGFTPDTPHPPCPP 141
PL V PP +P P P P PCPP
Sbjct: 1804 PLSVSTSGPPTPPLLPP---FPTPLPPPPPSIPCPP 1836
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 32.3 bits (72), Expect = 0.57
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 104 LPPLEVDAQEPPGV--ENIPRQILLPAGFTPDTPHPPCPPGRKG------DSRDLGHPVY 155
LPP PPG +P LP G P P PP PPG G + GHP +
Sbjct: 232 LPP---PGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGH 288
Query: 156 G 156
G
Sbjct: 289 G 289
>gi|116517292 cut-like 2 [Homo sapiens]
Length = 1486
Score = 32.0 bits (71), Expect = 0.74
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 102 GQLPPLEVDAQEPPGVENIPRQI---LLPAGFTPDTP--HP 137
GQ PP E + +PPG + +P+ LLP G TPD P HP
Sbjct: 1324 GQGPPKE-EHPDPPGNDGLPKVAPGPLLPGGSTPDCPSLHP 1363
>gi|38683827 ADAM metallopeptidase with thrombospondin type 1 motif,
7 preproprotein [Homo sapiens]
Length = 1686
Score = 32.0 bits (71), Expect = 0.74
Identities = 24/89 (26%), Positives = 30/89 (33%), Gaps = 16/89 (17%)
Query: 108 EVDAQEPPGVENIPRQILLPAGFTPDTPHPPCPPGRKGDSRDLGHPVYGEEAWKSATPVC 167
E A EPP E++PR P TP H PCP + W + C
Sbjct: 915 EQSALEPPACEHLPR----PPTETPCNRHVPCP------------ATWAVGNWSQCSVTC 958
Query: 168 EAPRQHQLYHCQRDEYPPPARRQQETLDV 196
Q + C D P QQ +V
Sbjct: 959 GEGTQRRNVLCTNDTGVPCDEAQQPASEV 987
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 31.6 bits (70), Expect = 0.97
Identities = 40/158 (25%), Positives = 52/158 (32%), Gaps = 23/158 (14%)
Query: 40 GQLLTDPSVQKSPCSVLSPMSKPKFIEDFSQSKPPRVPCQ----DLTEPYIPHYTSLKPS 95
G L S+++SP S SP S ++PP P D P P +PS
Sbjct: 227 GTALGGGSIRQSPLSSSSPFS----------NRPPLPPTPSRALDDKPPPPPPPVGNRPS 276
Query: 96 KNFEILGQLPPLEVDAQEPPGVENIPRQILLPAGFTPDTPH-----PPCPPGRKGDSRDL 150
+ E + PP P V + PR P P PP PP G+
Sbjct: 277 IHREAVPPPPP----QNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETP 332
Query: 151 GHPVYGEEAWKSATPVCEAPRQHQLYHCQRDEYPPPAR 188
P S P+ R L + PPP R
Sbjct: 333 RLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVR 370
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 31.6 bits (70), Expect = 0.97
Identities = 40/158 (25%), Positives = 52/158 (32%), Gaps = 23/158 (14%)
Query: 40 GQLLTDPSVQKSPCSVLSPMSKPKFIEDFSQSKPPRVPCQ----DLTEPYIPHYTSLKPS 95
G L S+++SP S SP S ++PP P D P P +PS
Sbjct: 227 GTALGGGSIRQSPLSSSSPFS----------NRPPLPPTPSRALDDKPPPPPPPVGNRPS 276
Query: 96 KNFEILGQLPPLEVDAQEPPGVENIPRQILLPAGFTPDTPH-----PPCPPGRKGDSRDL 150
+ E + PP P V + PR P P PP PP G+
Sbjct: 277 IHREAVPPPPP----QNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETP 332
Query: 151 GHPVYGEEAWKSATPVCEAPRQHQLYHCQRDEYPPPAR 188
P S P+ R L + PPP R
Sbjct: 333 RLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVR 370
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,226,147
Number of Sequences: 37866
Number of extensions: 916662
Number of successful extensions: 3768
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 3384
Number of HSP's gapped (non-prelim): 539
length of query: 317
length of database: 18,247,518
effective HSP length: 102
effective length of query: 215
effective length of database: 14,385,186
effective search space: 3092814990
effective search space used: 3092814990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.