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Search of human proteins with 4826972
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4826972 RNA binding motif protein 8A [Homo sapiens]
(174 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4826972 RNA binding motif protein 8A [Homo sapiens] 362 e-100
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 62 2e-10
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 62 3e-10
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 57 8e-09
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 57 1e-08
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 57 1e-08
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s... 56 1e-08
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap... 56 1e-08
gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens] 56 1e-08
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 55 2e-08
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 55 2e-08
gi|55956788 nucleolin [Homo sapiens] 55 3e-08
gi|9558733 transformer-2 alpha [Homo sapiens] 55 3e-08
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 55 4e-08
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 55 4e-08
gi|209862867 poly-U binding splicing factor 60KDa isoform c [Hom... 55 4e-08
gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo... 55 4e-08
gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo... 55 4e-08
gi|45439316 peptidylprolyl isomerase E isoform 2 [Homo sapiens] 55 4e-08
gi|5174637 peptidylprolyl isomerase E isoform 1 [Homo sapiens] 55 4e-08
gi|188219591 TIA1 protein isoform 2 [Homo sapiens] 54 5e-08
gi|148612890 serine-arginine repressor protein [Homo sapiens] 54 5e-08
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 54 7e-08
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 54 9e-08
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 54 9e-08
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 54 9e-08
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 53 1e-07
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 53 1e-07
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 53 1e-07
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 52 2e-07
>gi|4826972 RNA binding motif protein 8A [Homo sapiens]
Length = 174
Score = 362 bits (928), Expect = e-100
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 1 MADVLDLHEAGGEDFAMDEDGDESIHKLKEKAKKRKGRGFGSEEGSRARMREDYDSVEQD 60
MADVLDLHEAGGEDFAMDEDGDESIHKLKEKAKKRKGRGFGSEEGSRARMREDYDSVEQD
Sbjct: 1 MADVLDLHEAGGEDFAMDEDGDESIHKLKEKAKKRKGRGFGSEEGSRARMREDYDSVEQD 60
Query: 61 GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVE 120
GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVE
Sbjct: 61 GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVE 120
Query: 121 YETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSPDRRRR 174
YETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSPDRRRR
Sbjct: 121 YETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSPDRRRR 174
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 62.4 bits (150), Expect = 2e-10
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 63 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYE 122
+P RS+ +FV + EATEE + D F+E G + + L DR TG KGY EY+
Sbjct: 8 DPAMDRSLRS--VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQ 65
Query: 123 TYKEAQAAMEGLNGQDLMGQPISVD 147
+ A +AM LNG++ G+ + VD
Sbjct: 66 DQETALSAMRNLNGREFSGRALRVD 90
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 62.0 bits (149), Expect = 3e-10
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 63 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYE 122
+P RS+ +FV + EATEE + D F+E G + + L DR TG KGY EY+
Sbjct: 8 DPAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 65
Query: 123 TYKEAQAAMEGLNGQDLMGQPISVD 147
+ A +AM LNG++ G+ + VD
Sbjct: 66 DQETALSAMRNLNGREFSGRALRVD 90
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 57.0 bits (136), Expect = 8e-09
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 26/131 (19%)
Query: 60 DGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLV 119
+ D PG LF+ G++ E E+ + F +YG I + L DR T +G+ V
Sbjct: 3 EADRPGK--------LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFV 54
Query: 120 EYETYKEAQAAMEGLNGQDLMGQPISVDWCF----------------VRGPPKGKR--RG 161
+E+ +A+ A +NG+ L G+ I V+ RGPP+G R RG
Sbjct: 55 TFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRG 114
Query: 162 GRRRSRSPDRR 172
G +R P R
Sbjct: 115 GSGGTRGPPSR 125
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 56.6 bits (135), Expect = 1e-08
Identities = 48/146 (32%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 35 RKGRGF--GSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDK 92
R GRG GS+ G + D + E Q + + +FV G+ E T E + D
Sbjct: 248 RGGRGGMGGSDRGGFNKFGGPRDQGSRHDSE---QDNSDNNTIFVQGLGENVTIESVADY 304
Query: 93 FAEYGEIKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 144
F + G IK I+L DR TG LKG V ++ A+AA++ +G++ G PI
Sbjct: 305 FKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPI 364
Query: 145 SVDWC-----FVRGPPKGKRRGGRRR 165
V + F RG G RGGR R
Sbjct: 365 KVSFATRRADFNRG--GGNGRGGRGR 388
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 56.6 bits (135), Expect = 1e-08
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 26/130 (20%)
Query: 60 DGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLV 119
+ D PG LF+ G++ E E+ + +F +YG I + L DR T +G+ V
Sbjct: 3 EADRPGK--------LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFV 54
Query: 120 EYETYKEAQAAMEGLNGQDLMGQPISVDWCFV-------RGPP-----------KGKRRG 161
+E+ +A+AA +NG+ L G+ I V RGPP +G R G
Sbjct: 55 TFESPADAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRGG 114
Query: 162 GRRRSRSPDR 171
G RSP R
Sbjct: 115 GGGPRRSPSR 124
>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
sapiens]
Length = 600
Score = 56.2 bits (134), Expect = 1e-08
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 14/139 (10%)
Query: 37 GRGFGSEEGSRARMREDYDSVEQD-----GDEPGPQRSVEGWILFVTGVHEEATEEDIHD 91
GRG G R + +++ G P + ++V G+++ T +D+ D
Sbjct: 264 GRGGMGSAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNSAIYVQGLNDSVTLDDLAD 323
Query: 92 KFAEYGEIKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 143
F + G +K IH+ LD+ TG KG V YE A+AA+E +G+D G
Sbjct: 324 FFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSK 383
Query: 144 ISVDWCFVRGPPKGKRRGG 162
+ V + PP RGG
Sbjct: 384 LKVSLA-RKKPPMNSMRGG 401
>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
sapiens]
Length = 656
Score = 56.2 bits (134), Expect = 1e-08
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 14/139 (10%)
Query: 37 GRGFGSEEGSRARMREDYDSVEQD-----GDEPGPQRSVEGWILFVTGVHEEATEEDIHD 91
GRG G R + +++ G P + ++V G+++ T +D+ D
Sbjct: 320 GRGGMGSAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNSAIYVQGLNDSVTLDDLAD 379
Query: 92 KFAEYGEIKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 143
F + G +K IH+ LD+ TG KG V YE A+AA+E +G+D G
Sbjct: 380 FFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSK 439
Query: 144 ISVDWCFVRGPPKGKRRGG 162
+ V + PP RGG
Sbjct: 440 LKVSLA-RKKPPMNSMRGG 457
>gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]
Length = 322
Score = 56.2 bits (134), Expect = 1e-08
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 73 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 132
WI F+ G+ E TE DI F++YGEI NI+L D++TG KG+ + YE + A++
Sbjct: 37 WI-FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVD 95
Query: 133 GLNGQDLMGQPISVD 147
NG + G+ I VD
Sbjct: 96 NFNGIKIKGRTIRVD 110
>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
sapiens]
Length = 655
Score = 55.5 bits (132), Expect = 2e-08
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 61 GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKN--------IHLNLDRRTGY 112
G P + ++V G+++ T +D+ D F + G +K IH+ LD+ TG
Sbjct: 348 GPPVDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGK 407
Query: 113 LKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGG 162
KG V YE A+AA+E +G+D G + V + PP RGG
Sbjct: 408 PKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA-RKKPPMNSMRGG 456
>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
sapiens]
Length = 661
Score = 55.5 bits (132), Expect = 2e-08
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 61 GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKN--------IHLNLDRRTGY 112
G P + ++V G+++ T +D+ D F + G +K IH+ LD+ TG
Sbjct: 354 GPPVDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGK 413
Query: 113 LKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGG 162
KG V YE A+AA+E +G+D G + V + PP RGG
Sbjct: 414 PKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA-RKKPPMNSMRGG 462
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 55.1 bits (131), Expect = 3e-08
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 21/152 (13%)
Query: 14 DFAMDEDGDESIHKLKEKAKKRKGRGFGSEEGSRARMREDYDSVEQDGDEPGPQ-RSVEG 72
+FA ED E+++ ++ EG R+ E G P RS
Sbjct: 529 EFASFEDAKEALNSCNKR----------EIEGRAIRL-------ELQGPRGSPNARSQPS 571
Query: 73 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 132
LFV G+ E+ TEE + + F G ++ + DR TG KG+ V++ + ++A+AA E
Sbjct: 572 KTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 628
Query: 133 GLNGQDLMGQPISVDWCFVRGPPKGKRRGGRR 164
+ ++ G +++DW +G RGG R
Sbjct: 629 AMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGR 660
Score = 38.1 bits (87), Expect = 0.004
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 69 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQ 128
S E L ++ + ATEE + + F + IK + G KGY +E+ ++++A+
Sbjct: 482 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAK 537
Query: 129 AAMEGLNGQDLMGQPISVDWCFVRGPPKGK 158
A+ N +++ G+ I ++ RG P +
Sbjct: 538 EALNSCNKREIEGRAIRLELQGPRGSPNAR 567
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 55.1 bits (131), Expect = 3e-08
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134
L V G+ TE D+ + F+ YG + +++ D+RTG +G+ V +E +++ AME
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 135 NGQDLMGQPISVDWCFVR 152
NG +L G+ I VD+ +
Sbjct: 181 NGMELDGRRIRVDYSITK 198
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 54.7 bits (130), Expect = 4e-08
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 26/131 (19%)
Query: 60 DGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLV 119
+ D PG LF+ G++ E E+ + F +YG I + L DR T +G+ V
Sbjct: 3 EADRPGK--------LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFV 54
Query: 120 EYETYKEAQAAMEGLNGQDLMGQPISVDWCF----------------VRGPPK--GKRRG 161
+E+ +A+ A +NG+ L G+ I V+ RGPP+ G RG
Sbjct: 55 TFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRG 114
Query: 162 GRRRSRSPDRR 172
G +R P R
Sbjct: 115 GSGGTRGPPSR 125
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 54.7 bits (130), Expect = 4e-08
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 26/131 (19%)
Query: 60 DGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLV 119
+ D PG LF+ G++ E E+ + F +YG I + L DR T +G+ V
Sbjct: 3 EADRPGK--------LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFV 54
Query: 120 EYETYKEAQAAMEGLNGQDLMGQPISVDWCF----------------VRGPPK--GKRRG 161
+E+ +A+ A +NG+ L G+ I V+ RGPP+ G RG
Sbjct: 55 TFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRG 114
Query: 162 GRRRSRSPDRR 172
G +R P R
Sbjct: 115 GSGGTRGPPSR 125
>gi|209862867 poly-U binding splicing factor 60KDa isoform c [Homo
sapiens]
Length = 516
Score = 54.7 bits (130), Expect = 4e-08
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134
++V VH++ +++DI F +G+IK+ L D TG KGY +EYE + +Q A+ +
Sbjct: 185 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 244
Query: 135 NGQDLMGQPISV 146
N DL GQ + V
Sbjct: 245 NLFDLGGQYLRV 256
Score = 49.3 bits (116), Expect = 2e-06
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134
++V ++ E E+ I FA +G IK+I ++ D T KG+ VEYE + AQ A+E +
Sbjct: 88 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 147
Query: 135 NGQDLMGQPISV 146
N L G+ I V
Sbjct: 148 NSVMLGGRNIKV 159
>gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo
sapiens]
Length = 542
Score = 54.7 bits (130), Expect = 4e-08
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134
++V VH++ +++DI F +G+IK+ L D TG KGY +EYE + +Q A+ +
Sbjct: 211 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 270
Query: 135 NGQDLMGQPISV 146
N DL GQ + V
Sbjct: 271 NLFDLGGQYLRV 282
Score = 49.3 bits (116), Expect = 2e-06
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134
++V ++ E E+ I FA +G IK+I ++ D T KG+ VEYE + AQ A+E +
Sbjct: 114 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 173
Query: 135 NGQDLMGQPISV 146
N L G+ I V
Sbjct: 174 NSVMLGGRNIKV 185
>gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo
sapiens]
Length = 559
Score = 54.7 bits (130), Expect = 4e-08
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134
++V VH++ +++DI F +G+IK+ L D TG KGY +EYE + +Q A+ +
Sbjct: 228 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 287
Query: 135 NGQDLMGQPISV 146
N DL GQ + V
Sbjct: 288 NLFDLGGQYLRV 299
Score = 49.3 bits (116), Expect = 2e-06
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134
++V ++ E E+ I FA +G IK+I ++ D T KG+ VEYE + AQ A+E +
Sbjct: 131 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 190
Query: 135 NGQDLMGQPISV 146
N L G+ I V
Sbjct: 191 NSVMLGGRNIKV 202
>gi|45439316 peptidylprolyl isomerase E isoform 2 [Homo sapiens]
Length = 296
Score = 54.7 bits (130), Expect = 4e-08
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 74 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 133
+L+V G+ EE ++ +H F +G+I +I + LD T +G+ VE+E ++A AA++
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 134 LNGQDLMGQPISVD 147
+N +L G+ I V+
Sbjct: 67 MNESELFGRTIRVN 80
>gi|5174637 peptidylprolyl isomerase E isoform 1 [Homo sapiens]
Length = 301
Score = 54.7 bits (130), Expect = 4e-08
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 74 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 133
+L+V G+ EE ++ +H F +G+I +I + LD T +G+ VE+E ++A AA++
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 134 LNGQDLMGQPISVD 147
+N +L G+ I V+
Sbjct: 67 MNESELFGRTIRVN 80
>gi|188219591 TIA1 protein isoform 2 [Homo sapiens]
Length = 386
Score = 54.3 bits (129), Expect = 5e-08
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 67 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKE 126
QRS + + +FV + E T EDI FA +G I + + D TG KGY V + +
Sbjct: 100 QRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWD 159
Query: 127 AQAAMEGLNGQDLMGQPISVDWCFVRGPPKGK 158
A+ A++ + GQ L G+ I +W R PP K
Sbjct: 160 AENAIQQMGGQWLGGRQIRTNWA-TRKPPAPK 190
Score = 45.1 bits (105), Expect = 3e-05
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134
L+V + + TE I F++ G KN + +D T Y VE+ ++ A AA+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 135 NGQDLMGQPISVDW 148
NG+ +MG+ + V+W
Sbjct: 67 NGRKIMGKEVKVNW 80
Score = 38.5 bits (88), Expect = 0.003
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 62 DEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEY 121
DE Q S ++ GV TE+ + F+ +G+I I + D KGY+ V +
Sbjct: 203 DEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRF 256
Query: 122 ETYKEAQAAMEGLNGQDLMGQPISVDW 148
+++ A A+ +NG + G + W
Sbjct: 257 NSHESAAHAIVSVNGTTIEGHVVKCYW 283
>gi|148612890 serine-arginine repressor protein [Homo sapiens]
Length = 261
Score = 54.3 bits (129), Expect = 5e-08
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134
LF+ V + ED+ +F YG I ++++ LD T +G+ V++E ++A+ A+ L
Sbjct: 12 LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNL 71
Query: 135 NGQDLMGQPISVDWC----FVRGPPKGKRR-----GGRRRSRSPDRRR 173
N + + G+ I + + G K K R RRSRSP +RR
Sbjct: 72 NRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRR 119
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 53.9 bits (128), Expect = 7e-08
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134
LFV V+ + TE + +F YG IK IH+ +R+G +GY +EYE ++ +A +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 135 NGQDLMGQPISVD 147
+G+ + G+ + VD
Sbjct: 165 DGKKIDGRRVLVD 177
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 53.5 bits (127), Expect = 9e-08
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 66 PQRSVEGWI-LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 124
P VEG L V + + + + F +YG + ++++ DR T +G+ V +
Sbjct: 6 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 125 KEAQAAMEGLNGQDLMGQPISVDWCFV----------RGPPKGKRRGG--RRRSRSPDRR 172
++A+ AM+ ++G L G+ + V RGPP + GG RRSRSP RR
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRR 125
Query: 173 RR 174
RR
Sbjct: 126 RR 127
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 53.5 bits (127), Expect = 9e-08
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 29/176 (16%)
Query: 13 EDFAMDEDGDESIHKLKEKAKKRKGRGF------GSEEGSRARMREDYDSVEQDG----- 61
E+F+ +G + + K+K RGF + ++AR R V+ G
Sbjct: 163 EEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTV 222
Query: 62 ------DEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKG 115
+EP P+ + +LFV + TEE + F+E+G+++ R LK
Sbjct: 223 EWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLE--------RVKKLKD 274
Query: 116 YTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSPDR 171
Y V +E A AM+ +NG+++ G+ I + V P K+R R+ +R R
Sbjct: 275 YAFVHFEDRGAAVKAMDEMNGKEIEGEEIEI----VLAKPPDKKRKERQAARQASR 326
Score = 30.0 bits (66), Expect = 1.1
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 72 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 131
G +FV + + E+++ F + G I ++ L +D +G +GY + + + AQ A+
Sbjct: 63 GTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 122
Query: 132 EGLNGQDL-----MGQPISV--DWCFVRGPPKGKRR 160
+ + ++ +G ISV + FV PK K +
Sbjct: 123 KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTK 158
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 53.5 bits (127), Expect = 9e-08
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 29/176 (16%)
Query: 13 EDFAMDEDGDESIHKLKEKAKKRKGRGF------GSEEGSRARMREDYDSVEQDG----- 61
E+F+ +G + + K+K RGF + ++AR R V+ G
Sbjct: 264 EEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTV 323
Query: 62 ------DEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKG 115
+EP P+ + +LFV + TEE + F+E+G+++ R LK
Sbjct: 324 EWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLE--------RVKKLKD 375
Query: 116 YTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSPDR 171
Y V +E A AM+ +NG+++ G+ I + V P K+R R+ +R R
Sbjct: 376 YAFVHFEDRGAAVKAMDEMNGKEIEGEEIEI----VLAKPPDKKRKERQAARQASR 427
Score = 30.0 bits (66), Expect = 1.1
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 72 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 131
G +FV + + E+++ F + G I ++ L +D +G +GY + + + AQ A+
Sbjct: 164 GTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 223
Query: 132 EGLNGQDL-----MGQPISV--DWCFVRGPPKGKRR 160
+ + ++ +G ISV + FV PK K +
Sbjct: 224 KLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTK 259
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 53.1 bits (126), Expect = 1e-07
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 65 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 124
GP R L+V +H TE+ + F +G I++I L +D TG KGY + +
Sbjct: 248 GPMR------LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 301
Query: 125 KEAQAAMEGLNGQDLMGQPISV 146
+ A+ A+E LNG +L G+P+ V
Sbjct: 302 ECAKKALEQLNGFELAGRPMKV 323
Score = 37.7 bits (86), Expect = 0.005
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 46 SRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLN 105
S++ R+D V + D P+ + +F + D+ + F+ G+++++ +
Sbjct: 127 SKSPFRKDKSPVREPIDNLTPEER-DARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMI 185
Query: 106 LDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 146
DR + KG VE+ A+ GL GQ ++G PI V
Sbjct: 186 SDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIV 225
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 53.1 bits (126), Expect = 1e-07
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 65 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 124
GP R L+V +H TE+ + F +G I++I L +D TG KGY + +
Sbjct: 248 GPMR------LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 301
Query: 125 KEAQAAMEGLNGQDLMGQPISV 146
+ A+ A+E LNG +L G+P+ V
Sbjct: 302 ECAKKALEQLNGFELAGRPMKV 323
Score = 37.7 bits (86), Expect = 0.005
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 46 SRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLN 105
S++ R+D V + D P+ + +F + D+ + F+ G+++++ +
Sbjct: 127 SKSPFRKDKSPVREPIDNLTPEER-DARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMI 185
Query: 106 LDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 146
DR + KG VE+ A+ GL GQ ++G PI V
Sbjct: 186 SDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIV 225
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 53.1 bits (126), Expect = 1e-07
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134
LFV G+ + E+ + F++YG+I + + DR T +G+ V +E +A+ AM +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 135 NGQDLMGQPISVDWC---------FVRGPPKGKR---RGGRRRSRSPDR 171
NG+ + G+ I VD RG G R RGGR R R R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSR 116
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 52.4 bits (124), Expect = 2e-07
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 33/122 (27%)
Query: 85 TEEDIHDKFAEYGEIKNIHLNLDRRTGYL-KGYTLVEYETYKEAQAAMEGLNGQDLMGQP 143
T++ I + F+ YG+IK I + ++R +L KGY VE+E EA+ A++ ++G + GQ
Sbjct: 173 TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQE 232
Query: 144 IS-----VDW-------------------CFVRGPPKGKRRGG--------RRRSRSPDR 171
I+ W ++R PP+ +RR RRRSRSP R
Sbjct: 233 ITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGR 292
Query: 172 RR 173
RR
Sbjct: 293 RR 294
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,596,154
Number of Sequences: 37866
Number of extensions: 357571
Number of successful extensions: 1966
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 1432
Number of HSP's gapped (non-prelim): 567
length of query: 174
length of database: 18,247,518
effective HSP length: 95
effective length of query: 79
effective length of database: 14,650,248
effective search space: 1157369592
effective search space used: 1157369592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.