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Search of human proteins with 13273317
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13273317 homeobox B8 [Homo sapiens]
(243 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13273317 homeobox B8 [Homo sapiens] 508 e-144
gi|12056969 homeobox C8 [Homo sapiens] 295 3e-80
gi|15029506 homeobox D8 [Homo sapiens] 265 3e-71
gi|85068580 homeobox B7 [Homo sapiens] 143 2e-34
gi|24497556 homeobox A7 [Homo sapiens] 141 4e-34
gi|23503237 homeobox B6 [Homo sapiens] 125 3e-29
gi|4504469 homeobox B5 [Homo sapiens] 120 8e-28
gi|13489077 homeobox A6 [Homo sapiens] 117 1e-26
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 115 3e-26
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 115 3e-26
gi|24497517 homeobox A5 [Homo sapiens] 115 3e-26
gi|24497538 homeobox C4 [Homo sapiens] 110 8e-25
gi|24497540 homeobox C4 [Homo sapiens] 110 8e-25
gi|11321638 homeobox C5 [Homo sapiens] 106 2e-23
gi|23397672 homeobox D4 [Homo sapiens] 100 9e-22
gi|13273315 homeobox B4 [Homo sapiens] 100 9e-22
gi|148613882 homeobox A4 [Homo sapiens] 97 1e-20
gi|15029508 homeobox B9 [Homo sapiens] 97 1e-20
gi|23510366 homeobox D10 [Homo sapiens] 96 4e-20
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 94 1e-19
gi|24497533 homeobox C10 [Homo sapiens] 94 1e-19
gi|194363768 homeobox D9 [Homo sapiens] 93 2e-19
gi|24497547 homeobox C9 [Homo sapiens] 92 3e-19
gi|182765442 homeobox A10 isoform a [Homo sapiens] 91 1e-18
gi|24497551 homeobox A10 isoform b [Homo sapiens] 90 2e-18
gi|23097236 homeobox A9 [Homo sapiens] 89 5e-18
gi|10140847 homeobox A2 [Homo sapiens] 85 5e-17
gi|24497513 homeobox A3 isoform a [Homo sapiens] 84 9e-17
gi|13562112 homeobox A3 isoform a [Homo sapiens] 84 9e-17
gi|84570137 homeobox B3 [Homo sapiens] 83 2e-16
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 508 bits (1309), Expect = e-144
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHG 60
MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHG
Sbjct: 1 MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHG 60
Query: 61 PSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGE 120
PSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGE
Sbjct: 61 PSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGE 120
Query: 121 EAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVS 180
EAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVS
Sbjct: 121 EAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVS 180
Query: 181 HALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKG 240
HALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKG
Sbjct: 181 HALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKG 240
Query: 241 DKK 243
DKK
Sbjct: 241 DKK 243
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 295 bits (754), Expect = 3e-80
Identities = 150/243 (61%), Positives = 180/243 (74%), Gaps = 6/243 (2%)
Query: 1 MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPS-SGGSFQHPSQ-IQEFY 58
MSSYFVN LFSKYK GESL P YYDC F Q +G +VYGP S FQH S +Q+F+
Sbjct: 1 MSSYFVNPLFSKYKAGESLEPAYYDCRFPQSVGRSHALVYGPGGSAPGFQHASHHVQDFF 60
Query: 59 H-GPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQ-DPDLVQYADCKLAAAS 116
H G S +S + YQQNPC+++CHGD FYGY+ L RQSL+GAQ + +VQY DCK +A +
Sbjct: 61 HHGTSGISNSGYQQNPCSLSCHGDASKFYGYEALPRQSLYGAQQEASVVQYPDCKSSANT 120
Query: 117 GLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRR 176
E Q+ SP+ +FPWMRP A GRR GRQTYSRYQTLELEKEFLFNPYLTRKRR
Sbjct: 121 NSSEGQGHLNQNSSPSLMFPWMRPHAP-GRRSGRQTYSRYQTLELEKEFLFNPYLTRKRR 179
Query: 177 IEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGD 236
IEVSHALGLTERQVKIWFQNRRMKWKKENNKDK P ++ ++E++E++ E + +E +
Sbjct: 180 IEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLPGAR-DEEKVEEEGNEEEEKEEEEKE 238
Query: 237 AQK 239
K
Sbjct: 239 ENK 241
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 265 bits (677), Expect = 3e-71
Identities = 147/276 (53%), Positives = 176/276 (63%), Gaps = 53/276 (19%)
Query: 1 MSSYFVNSLFSKYKT--------GESLRPNYYDCGFAQDLGGRPTV------VYGPSSGG 46
MSSYFVN L+SKYK GE++ P YYDC FA ++GGR +YG S+ G
Sbjct: 1 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG 60
Query: 47 ---------SFQHPS-------------QIQEFYHGPSSLSTAPYQQNP----------- 73
+ HPS + QE++H A YQ P
Sbjct: 61 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP 120
Query: 74 ---CA-VACHGDPGNFYGYDPLQRQSLFGAQ-DPDLVQYADCKLAAASGLGEEAEGSEQS 128
C +ACHG+P FYGYD LQRQ +F Q + +LVQY DCK +++ +GE+ + QS
Sbjct: 121 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCK-SSSGNIGEDPDHLNQS 179
Query: 129 PSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTER 188
SP+Q+FPWMRPQAA GRRRGRQTYSR+QTLELEKEFLFNPYLTRKRRIEVSHAL LTER
Sbjct: 180 SSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTER 239
Query: 189 QVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQK 224
QVKIWFQNRRMKWKKENNKDKFP S+ E ++ E +K
Sbjct: 240 QVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKK 275
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 143 bits (360), Expect = 2e-34
Identities = 92/230 (40%), Positives = 126/230 (54%), Gaps = 20/230 (8%)
Query: 2 SSYFVNSLFSKYKTGESLR-----PNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQE 56
S Y+ N+LFSKY S+ P C FA + RP YG SG SF + +Q
Sbjct: 3 SLYYANTLFSKYPASSSVFATGAFPEQTSCAFASN-PQRPG--YGAGSGASFA--ASMQG 57
Query: 57 FYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAAS 116
Y G ++ Q+ V G YG +P + +L A A+
Sbjct: 58 LYPGGGGMAG----QSAAGVYAAG-----YGLEPSSFNMHCAPFEQNLSGVCPGDSAKAA 108
Query: 117 GLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRR 176
G E+ + + S +++PWMR + R+RGRQTY+RYQTLELEKEF +N YLTR+RR
Sbjct: 109 GAKEQRDSDLAAESNFRIYPWMR-SSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRR 167
Query: 177 IEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLE 226
IE++H L LTERQ+KIWFQNRRMKWKKEN ++ ++ E E+++ E
Sbjct: 168 IEIAHTLCLTERQIKIWFQNRRMKWKKENKTAGPGTTGQDRAEAEEEEEE 217
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 141 bits (356), Expect = 4e-34
Identities = 99/246 (40%), Positives = 132/246 (53%), Gaps = 28/246 (11%)
Query: 2 SSYFVNSLFSKYKTGESLRPNYY--DCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYH 59
SSY+VN+LFSKY G SL N C FA + YG +G S + Y+
Sbjct: 3 SSYYVNALFSKYTAGASLFQNAEPTSCSFAPN---SQRSGYGAGAGA---FASTVPGLYN 56
Query: 60 GPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLG 119
S L +P+ +G + YG P + + P L C A
Sbjct: 57 VNSPLYQSPFASG------YGLGADAYGNLPC---ASYDQNIPGL-----CSDLAKGACD 102
Query: 120 EEAEGSEQSPSPT--QLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRI 177
+ EG+ + +++PWMR + R+RGRQTY+RYQTLELEKEF FN YLTR+RRI
Sbjct: 103 KTDEGALHGAAEANFRIYPWMR-SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRI 161
Query: 178 EVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDA 237
E++HAL LTERQ+KIWFQNRRMKWKKE +KD+ P++ E A AAD+ D
Sbjct: 162 EIAHALCLTERQIKIWFQNRRMKWKKE-HKDEGPTAAAAPEGAVPS--AAATAAADKADE 218
Query: 238 QKGDKK 243
+ D++
Sbjct: 219 EDDDEE 224
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 125 bits (314), Expect = 3e-29
Identities = 94/234 (40%), Positives = 117/234 (50%), Gaps = 23/234 (9%)
Query: 1 MSSYFVNSLFS-KYKTGESL---RPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQE 56
MSSYFVNS F +G+ + Y G+A L P YGP G Q
Sbjct: 1 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAP-YGPGPG---QDKGFATS 56
Query: 57 FYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAAS 116
Y+ P+ Y + A C P + + +L GA + K A
Sbjct: 57 SYYPPAG---GGYGR---AAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQ 110
Query: 117 GLGEEAEGSEQSPSPTQLFPWMRPQAAAGR-------RRGRQTYSRYQTLELEKEFLFNP 169
E EQ S T ++PWM+ + RRGRQTY+RYQTLELEKEF +N
Sbjct: 111 DKSVFGETEEQKCS-TPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNR 169
Query: 170 YLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQ 223
YLTR+RRIE++HAL LTERQ+KIWFQNRRMKWKKE+ E+EE EKQ
Sbjct: 170 YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEE-EKQ 222
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 120 bits (302), Expect = 8e-28
Identities = 90/259 (34%), Positives = 113/259 (43%), Gaps = 60/259 (23%)
Query: 1 MSSYFVNSLFSKYKTGESLRPNYYDCGFA-----QDLGGRPTVVYGPSSGG--------- 46
MSSYFVNS +Y G + Y G + +D T YG + G
Sbjct: 1 MSSYFVNSFSGRYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSS 60
Query: 47 --------------SFQHPSQIQEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDP-L 91
+F P+Q F SS S + + PC G+ +G P
Sbjct: 61 ASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCT------NGDSHGAKPSA 114
Query: 92 QRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPS-------------------PT 132
S + + A+AS EEA SPS
Sbjct: 115 SSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTP 174
Query: 133 QLFPWMRP------QAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLT 186
Q+FPWMR +R R Y+RYQTLELEKEF FN YLTR+RRIE++HAL L+
Sbjct: 175 QIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 234
Query: 187 ERQVKIWFQNRRMKWKKEN 205
ERQ+KIWFQNRRMKWKK+N
Sbjct: 235 ERQIKIWFQNRRMKWKKDN 253
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 117 bits (292), Expect = 1e-26
Identities = 95/232 (40%), Positives = 123/232 (53%), Gaps = 45/232 (19%)
Query: 1 MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHG 60
MSSYFVN F P G LG P G + F P+ +G
Sbjct: 1 MSSYFVNPTF----------PGSLPSGQDSFLGQLPLYQAGYDALRPF--PAS-----YG 43
Query: 61 PSSLS----TAP--YQQNPCAVACHG-----DPGNFYGYDPLQRQSLFGAQDP----DLV 105
SSL T+P YQQ+ +AC+ FY L S G+ D +
Sbjct: 44 ASSLPDKTYTSPCFYQQSNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYL 103
Query: 106 QYA---DCKLAAASGLGEEA--EGSEQSPSPTQLFPWM-RPQAAAGR------RRGRQTY 153
++ K ++SG G+ EG+++ + + ++PWM R + AG RRGRQTY
Sbjct: 104 HFSPEQQYKPDSSSGQGKALHDEGADRKYT-SPVYPWMQRMNSCAGAVYGSHGRRGRQTY 162
Query: 154 SRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKEN 205
+RYQTLELEKEF FN YLTR+RRIE+++AL LTERQ+KIWFQNRRMKWKKEN
Sbjct: 163 TRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKEN 214
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 115 bits (289), Expect = 3e-26
Identities = 56/81 (69%), Positives = 66/81 (81%), Gaps = 7/81 (8%)
Query: 133 QLFPWMRPQAA-------AGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGL 185
Q++PWM+ + A RRRGRQ YSRYQTLELEKEF FN YLTR+RRIE+++AL L
Sbjct: 39 QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL 98
Query: 186 TERQVKIWFQNRRMKWKKENN 206
TERQ+KIWFQNRRMKWKKE+N
Sbjct: 99 TERQIKIWFQNRRMKWKKESN 119
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 115 bits (289), Expect = 3e-26
Identities = 56/81 (69%), Positives = 66/81 (81%), Gaps = 7/81 (8%)
Query: 133 QLFPWMRPQAA-------AGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGL 185
Q++PWM+ + A RRRGRQ YSRYQTLELEKEF FN YLTR+RRIE+++AL L
Sbjct: 121 QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL 180
Query: 186 TERQVKIWFQNRRMKWKKENN 206
TERQ+KIWFQNRRMKWKKE+N
Sbjct: 181 TERQIKIWFQNRRMKWKKESN 201
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 115 bits (288), Expect = 3e-26
Identities = 90/255 (35%), Positives = 114/255 (44%), Gaps = 51/255 (20%)
Query: 1 MSSYFVNSLFSKYKTGESLR-PNYYDCGFAQDL--------GGRPTVVY-------GPSS 44
MSSYFVNS +Y G + NY D + GR Y G S
Sbjct: 1 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG 60
Query: 45 GGSFQHPSQIQEFYHGPSSLSTAPYQQNPCAVACH----------------GDPGNFYGY 88
G F + + + S+ P P A + H G + G
Sbjct: 61 SGHFGSGERARSYAASASAAPAEPRYSQP-ATSTHSPQPDPLPCSAVAPSPGSDSHHGGK 119
Query: 89 DPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGS--------EQSPSPT---QLFPW 137
+ L S A + + ASG E+A S E SP+P Q++PW
Sbjct: 120 NSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPW 179
Query: 138 MRPQ-------AAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQV 190
MR +R R Y+RYQTLELEKEF FN YLTR+RRIE++HAL L+ERQ+
Sbjct: 180 MRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQI 239
Query: 191 KIWFQNRRMKWKKEN 205
KIWFQNRRMKWKK+N
Sbjct: 240 KIWFQNRRMKWKKDN 254
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 110 bits (276), Expect = 8e-25
Identities = 82/233 (35%), Positives = 114/233 (48%), Gaps = 33/233 (14%)
Query: 1 MSSYFVNSLF--SKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFY 58
MSSY ++S + K+ E N Y + YG + FQH Q E Y
Sbjct: 3 MSSYLMDSNYIDPKFPPCEEYSQNSY-------IPEHSPEYYGRTRESGFQHHHQ--ELY 53
Query: 59 HGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGL 118
P + P +Q C + G PGN G+ P Q + L + A A+AS
Sbjct: 54 PPPPPRPSYPERQYSCT-SLQG-PGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPS 111
Query: 119 GEEAEGSEQSPSPTQ--------LFPWMR--------PQAAAGR-RRGRQTYSRYQTLEL 161
S+ +P ++PWM+ P G +R R Y+R Q LEL
Sbjct: 112 PAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLEL 171
Query: 162 EKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSK 214
EKEF +N YLTR+RRIE++H+L L+ERQ+KIWFQNRRMKWKK++ + P++K
Sbjct: 172 EKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDH---RLPNTK 221
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 110 bits (276), Expect = 8e-25
Identities = 82/233 (35%), Positives = 114/233 (48%), Gaps = 33/233 (14%)
Query: 1 MSSYFVNSLF--SKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFY 58
MSSY ++S + K+ E N Y + YG + FQH Q E Y
Sbjct: 3 MSSYLMDSNYIDPKFPPCEEYSQNSY-------IPEHSPEYYGRTRESGFQHHHQ--ELY 53
Query: 59 HGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGL 118
P + P +Q C + G PGN G+ P Q + L + A A+AS
Sbjct: 54 PPPPPRPSYPERQYSCT-SLQG-PGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPS 111
Query: 119 GEEAEGSEQSPSPTQ--------LFPWMR--------PQAAAGR-RRGRQTYSRYQTLEL 161
S+ +P ++PWM+ P G +R R Y+R Q LEL
Sbjct: 112 PAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLEL 171
Query: 162 EKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSK 214
EKEF +N YLTR+RRIE++H+L L+ERQ+KIWFQNRRMKWKK++ + P++K
Sbjct: 172 EKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDH---RLPNTK 221
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 106 bits (265), Expect = 2e-23
Identities = 50/85 (58%), Positives = 64/85 (75%), Gaps = 3/85 (3%)
Query: 124 GSEQSPSPTQLFPWMRPQAAAGR---RRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVS 180
G Q P+P Q++PWM + +R R +Y+RYQTLELEKEF FN YLTR+RRIE++
Sbjct: 130 GLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIA 189
Query: 181 HALGLTERQVKIWFQNRRMKWKKEN 205
+ L L ERQ+KIWFQNRRMKWKK++
Sbjct: 190 NNLCLNERQIKIWFQNRRMKWKKDS 214
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 100 bits (250), Expect = 9e-22
Identities = 76/225 (33%), Positives = 103/225 (45%), Gaps = 19/225 (8%)
Query: 1 MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHG 60
MSSY VNS + K Y G+ + G G + G FQ P G
Sbjct: 3 MSSYMVNSKYVDPKFPPC--EEYLQGGYLGEQGA--DYYGGGAQGADFQPPGLYPRPDFG 58
Query: 61 PSSLS-TAPYQQNPCAVACHG-DPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGL 118
+ P + HG +PG G+ + P + + S
Sbjct: 59 EQPFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDP 118
Query: 119 GEEAEGSEQSPSPTQLFPWMR--------PQAAAGR-RRGRQTYSRYQTLELEKEFLFNP 169
+ G+ P ++PWM+ P G +R R Y+R Q LELEKEF FN
Sbjct: 119 KQPPSGTALK-QPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNR 177
Query: 170 YLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSK 214
YLTR+RRIE++H L L+ERQ+KIWFQNRRMKWKK++ K P++K
Sbjct: 178 YLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDH---KLPNTK 219
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 100 bits (250), Expect = 9e-22
Identities = 53/102 (51%), Positives = 69/102 (67%), Gaps = 19/102 (18%)
Query: 129 PSPTQ-------LFPWMR--------PQAAAGR-RRGRQTYSRYQTLELEKEFLFNPYLT 172
PSP+ ++PWMR P A G +R R Y+R Q LELEKEF +N YLT
Sbjct: 129 PSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLT 188
Query: 173 RKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSK 214
R+RR+E++HAL L+ERQ+KIWFQNRRMKWKK++ K P++K
Sbjct: 189 RRRRVEIAHALCLSERQIKIWFQNRRMKWKKDH---KLPNTK 227
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 97.4 bits (241), Expect = 1e-20
Identities = 50/90 (55%), Positives = 63/90 (70%), Gaps = 12/90 (13%)
Query: 134 LFPWMR--------PQAAAGR-RRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALG 184
++PWM+ P G +R R Y+R Q LELEKEF FN YLTR+RRIE++H L
Sbjct: 194 VYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 253
Query: 185 LTERQVKIWFQNRRMKWKKENNKDKFPSSK 214
L+ERQVKIWFQNRRMKWKK++ K P++K
Sbjct: 254 LSERQVKIWFQNRRMKWKKDH---KLPNTK 280
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 97.1 bits (240), Expect = 1e-20
Identities = 82/241 (34%), Positives = 113/241 (46%), Gaps = 35/241 (14%)
Query: 1 MSSYFVNSLFS---------KYKTGE---SLRPNYYDCGFAQDLGGRPTV-VYGPSSGGS 47
+SSY+V+S+ S K+ +G+ S +P + + +P V+G S
Sbjct: 7 LSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASWAPL 66
Query: 48 FQHPS-QIQEFYHG---PSSLSTAP--YQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQD 101
H S + YH P + A Y + A G+ G ++ + L GA
Sbjct: 67 SPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEPLLGAPG 126
Query: 102 PDLVQYADCKLAAASGLGEEA---------------EGSEQSPSPTQLFPWMRPQAAAGR 146
+L++ + + + G EA EGSE P Q P A
Sbjct: 127 -ELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWLHARSS 185
Query: 147 RRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENN 206
R+ R Y++YQTLELEKEFLFN YLTR RR EV+ L L+ERQVKIWFQNRRMK KK N
Sbjct: 186 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNK 245
Query: 207 K 207
+
Sbjct: 246 E 246
>gi|23510366 homeobox D10 [Homo sapiens]
Length = 340
Score = 95.5 bits (236), Expect = 4e-20
Identities = 62/170 (36%), Positives = 92/170 (54%), Gaps = 19/170 (11%)
Query: 55 QEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYAD----- 109
QE+ + P ST Q NP A + + + G Q+P V +
Sbjct: 164 QEYNNSPEGSSTVMLQLNPRGAAKPQLSAAQLQMEKKMNEPVSG-QEPTKVSQVESPEAK 222
Query: 110 ----------CKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTL 159
+++ +S +E E E+ S T W+ A +GR++ R Y+++QTL
Sbjct: 223 GGLPEERSCLAEVSVSSPEVQEKESKEEIKSDTPTSNWLT--AKSGRKK-RCPYTKHQTL 279
Query: 160 ELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDK 209
ELEKEFLFN YLTR+RR+E+S ++ LT+RQVKIWFQNRRMK KK + +++
Sbjct: 280 ELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRENR 329
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 93.6 bits (231), Expect = 1e-19
Identities = 54/112 (48%), Positives = 68/112 (60%), Gaps = 21/112 (18%)
Query: 119 GEEAEGSE----QSPSPTQL-FPWMRPQAA-------AG---------RRRGRQTYSRYQ 157
G EG+E + P+ QL FPWM+ A AG +R R Y+R Q
Sbjct: 98 GPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQ 157
Query: 158 TLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDK 209
LELEKEFLFN Y++R RR+E++ L LTER +KIWFQNRRMKWKKE +K +
Sbjct: 158 LLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKKR 209
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 93.6 bits (231), Expect = 1e-19
Identities = 54/117 (46%), Positives = 75/117 (64%), Gaps = 4/117 (3%)
Query: 94 QSLFGAQ-DPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQT 152
QSL G + P + K A +S + E E+ + W+ A +GR++ R
Sbjct: 218 QSLAGPKGSPSESEKERAKAADSSPDTSDNEAKEEIKAENTTGNWLT--AKSGRKK-RCP 274
Query: 153 YSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDK 209
Y+++QTLELEKEFLFN YLTR+RR+E+S + LT+RQVKIWFQNRRMK KK N +++
Sbjct: 275 YTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENR 331
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 93.2 bits (230), Expect = 2e-19
Identities = 55/96 (57%), Positives = 62/96 (64%), Gaps = 6/96 (6%)
Query: 120 EEAEGSEQSPSPTQLFPWMRPQA----AAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKR 175
+E E P QL P P A A R+ R Y++YQTLELEKEFLFN YLTR R
Sbjct: 256 KEEEKQHSQPQQQQLDP-NNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDR 314
Query: 176 RIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFP 211
R EV+ L LTERQVKIWFQNRRMK KK +K+K P
Sbjct: 315 RYEVARILNLTERQVKIWFQNRRMKMKK-MSKEKCP 349
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 92.4 bits (228), Expect = 3e-19
Identities = 51/94 (54%), Positives = 62/94 (65%), Gaps = 4/94 (4%)
Query: 114 AASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTR 173
A +G + E ++ PS + W+ A R+ R Y++YQTLELEKEFLFN YLTR
Sbjct: 164 ALAGSKHKEEKADLDPS-NPVANWIH---ARSTRKKRCPYTKYQTLELEKEFLFNMYLTR 219
Query: 174 KRRIEVSHALGLTERQVKIWFQNRRMKWKKENNK 207
RR EV+ L LTERQVKIWFQNRRMK KK N +
Sbjct: 220 DRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKE 253
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 90.5 bits (223), Expect = 1e-18
Identities = 53/107 (49%), Positives = 71/107 (66%), Gaps = 12/107 (11%)
Query: 114 AASGLGEE-----AEGSEQSPSPTQLFPWMRPQAA------AGRRRGRQTYSRYQTLELE 162
A+S EE +E S+ SP L AA +GR++ R Y+++QTLELE
Sbjct: 294 ASSSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKK-RCPYTKHQTLELE 352
Query: 163 KEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDK 209
KEFLFN YLTR+RR+E+S ++ LT+RQVKIWFQNRRMK KK N +++
Sbjct: 353 KEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENR 399
>gi|24497551 homeobox A10 isoform b [Homo sapiens]
Length = 94
Score = 90.1 bits (222), Expect = 2e-18
Identities = 43/68 (63%), Positives = 58/68 (85%), Gaps = 1/68 (1%)
Query: 142 AAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKW 201
A +GR++ R Y+++QTLELEKEFLFN YLTR+RR+E+S ++ LT+RQVKIWFQNRRMK
Sbjct: 17 AKSGRKK-RCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKL 75
Query: 202 KKENNKDK 209
KK N +++
Sbjct: 76 KKMNRENR 83
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 88.6 bits (218), Expect = 5e-18
Identities = 46/67 (68%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Query: 143 AAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWK 202
A R+ R Y+++QTLELEKEFLFN YLTR RR EV+ L LTERQVKIWFQNRRMK K
Sbjct: 203 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMK 262
Query: 203 KENNKDK 209
K NKD+
Sbjct: 263 K-INKDR 268
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 85.1 bits (209), Expect = 5e-17
Identities = 50/98 (51%), Positives = 59/98 (60%), Gaps = 11/98 (11%)
Query: 142 AAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKW 201
+ G RR R Y+ Q LELEKEF FN YL R RR+E++ L LTERQVK+WFQNRRMK
Sbjct: 139 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH 198
Query: 202 K-----KENN------KDKFPSSKCEQEELEKQKLERA 228
K KEN K S K E++E EK E+A
Sbjct: 199 KRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQA 236
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 84.3 bits (207), Expect = 9e-17
Identities = 46/102 (45%), Positives = 58/102 (56%), Gaps = 27/102 (26%)
Query: 130 SPT---QLFPWMR------------------------PQAAAGRRRGRQTYSRYQTLELE 162
SPT Q+FPWM+ P A +R R Y+ Q +ELE
Sbjct: 148 SPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELE 207
Query: 163 KEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKE 204
KEF FN YL R RR+E+++ L LTERQ+KIWFQNRRMK+KK+
Sbjct: 208 KEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 249
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 84.3 bits (207), Expect = 9e-17
Identities = 46/102 (45%), Positives = 58/102 (56%), Gaps = 27/102 (26%)
Query: 130 SPT---QLFPWMR------------------------PQAAAGRRRGRQTYSRYQTLELE 162
SPT Q+FPWM+ P A +R R Y+ Q +ELE
Sbjct: 148 SPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELE 207
Query: 163 KEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKE 204
KEF FN YL R RR+E+++ L LTERQ+KIWFQNRRMK+KK+
Sbjct: 208 KEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 249
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 82.8 bits (203), Expect = 2e-16
Identities = 39/74 (52%), Positives = 51/74 (68%)
Query: 140 PQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRM 199
P +A +R R Y+ Q +ELEKEF FN YL R RR+E+++ L L+ERQ+KIWFQNRRM
Sbjct: 182 PPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRM 241
Query: 200 KWKKENNKDKFPSS 213
K+KK+ SS
Sbjct: 242 KYKKDQKAKGLASS 255
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,108,591
Number of Sequences: 37866
Number of extensions: 559811
Number of successful extensions: 2398
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1986
Number of HSP's gapped (non-prelim): 438
length of query: 243
length of database: 18,247,518
effective HSP length: 99
effective length of query: 144
effective length of database: 14,498,784
effective search space: 2087824896
effective search space used: 2087824896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.