Guide to the Human Genome
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Name: HP Sequence: fasta or formatted (406aa) NCBI GI: 4826762
Description:

haptoglobin isoform 1 preproprotein

Referenced in:

Complement
Additional Host Defense Functions

Other entries for this name:
alt prot [347aa] haptoglobin isoform 2 preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         30           1
 C cysteine            3.0         12           1
 D aspartate           6.2         25           2
 E glutamate           6.2         25           2
 F phenylalanine       2.0          8           1
 G glycine             7.6         31           2
 H histidine           3.2         13           2
 I isoleucine          4.4         18           1
 K lysine              8.6         35           2
 L leucine             7.6         31           3
 M methionine          1.2          5           1
 N asparagine          5.2         21           2
 P proline             5.2         21           2
 Q glutamine           4.2         17           1
 R arginine            2.2          9           1
 S serine              4.4         18           1
 T threonine           5.4         22           2
 V valine              8.9         36           2
 W tryptophan          2.0          8           1
 Y tyrosine            5.2         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   haptoglobin isoform 1 preproprotein 
HP                    0.779   haptoglobin isoform 2 preproprotein 
HPR                   0.710   haptoglobin-related protein 
C1R                   0.190   complement component 1, r subcomponent 
C1S                   0.170   complement component 1, s subcomponent precursor [Hom...
C1S                   0.170   complement component 1, s subcomponent precursor [Ho...
MASP1                 0.162   mannan-binding lectin serine protease 1 isoform 1 pr...
MASP1                 0.162   mannan-binding lectin serine protease 1 isoform 2 pr...
MASP2                 0.144   mannan-binding lectin serine protease 2 isoform 1 pr...
C1RL                  0.134   complement component 1, r subcomponent-like precursor...
F7                    0.117   coagulation factor VII isoform b precursor 
F7                    0.117   coagulation factor VII isoform a precursor 
ESSPL                 0.114   epidermis-specific serine protease-like protein [Ho...
F10                   0.105   coagulation factor X preproprotein 
F9                    0.098   coagulation factor IX preproprotein 
PRSS27                0.097   marapsin 
PROC                  0.096   protein C 
PRSS8                 0.093   prostasin preproprotein 
UNQ9391               0.092   hypothetical protein LOC203074 
F2                    0.091   coagulation factor II preproprotein 
TMPRSS6               0.089   transmembrane protease, serine 6 
TMPRSS9               0.089   transmembrane protease, serine 9 
F11                   0.087   coagulation factor XI precursor 
TMPRSS11D             0.087   transmembrane protease, serine 11D 
PRSS33                0.086   protease, serine, 33 
PRSS7                 0.086   enterokinase precursor 
TMPRSS11E             0.086   transmembrane protease, serine 11E 
TMPRSS5               0.086   transmembrane protease, serine 5 
TMPRSS11E2            0.086   transmembrane protease, serine 11E2 
PLG                   0.085   plasminogen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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