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Search of human proteins with 48255962
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|48255962 hypothetical protein LOC146723 [Homo sapiens]
(243 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|48255962 hypothetical protein LOC146723 [Homo sapiens] 514 e-146
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens] 37 0.020
gi|7662386 NLR family, pyrin domain containing 1 isoform 2 [Homo... 34 0.10
gi|14719835 NLR family, pyrin domain containing 1 isoform 4 [Hom... 34 0.10
gi|74271814 NLR family, pyrin domain containing 1 isoform 5 [Hom... 34 0.10
gi|14719833 NLR family, pyrin domain containing 1 isoform 3 [Hom... 34 0.10
gi|14719829 NLR family, pyrin domain containing 1 isoform 1 [Hom... 34 0.10
gi|169211438 PREDICTED: hypothetical protein [Homo sapiens] 33 0.22
gi|169211910 PREDICTED: hypothetical protein [Homo sapiens] 33 0.22
gi|169211055 PREDICTED: hypothetical protein [Homo sapiens] 33 0.22
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 32 0.38
gi|4885105 chromatin assembly factor 1 subunit B [Homo sapiens] 32 0.65
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 31 0.85
gi|124378039 SEC16 homolog A [Homo sapiens] 30 1.9
gi|55741655 anoctamin 8 [Homo sapiens] 30 2.5
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 30 2.5
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 30 2.5
gi|134031945 SCO-spondin [Homo sapiens] 30 2.5
gi|42516567 ubiquitin specific protease 33 isoform 1 [Homo sapiens] 29 3.2
gi|42516565 ubiquitin specific protease 33 isoform 2 [Homo sapiens] 29 3.2
gi|54873613 agrin [Homo sapiens] 29 3.2
gi|19743803 fibulin 5 precursor [Homo sapiens] 29 3.2
gi|209915594 transcription factor 3 isoform E47 [Homo sapiens] 29 4.2
gi|27777636 transcription factor 3 isoform E12 [Homo sapiens] 29 4.2
gi|148612835 zinc finger protein 207 isoform c [Homo sapiens] 29 4.2
gi|8922511 mitochondrial ribosomal protein S18A [Homo sapiens] 29 4.2
gi|4508017 zinc finger protein 207 isoform a [Homo sapiens] 29 4.2
gi|73808090 zinc finger protein 207 isoform b [Homo sapiens] 29 4.2
gi|226442744 hypothetical protein LOC643965 [Homo sapiens] 28 5.5
gi|4758980 pituitary tumor-transforming protein 1 [Homo sapiens] 28 5.5
>gi|48255962 hypothetical protein LOC146723 [Homo sapiens]
Length = 243
Score = 514 bits (1324), Expect = e-146
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MDELALSFSLTCLLPENRASLSPSQPLSFQCLKAPATLTWEDEKQQRWGQPHGPVSSPLL 60
MDELALSFSLTCLLPENRASLSPSQPLSFQCLKAPATLTWEDEKQQRWGQPHGPVSSPLL
Sbjct: 1 MDELALSFSLTCLLPENRASLSPSQPLSFQCLKAPATLTWEDEKQQRWGQPHGPVSSPLL 60
Query: 61 GDHRCLVPFRDLNPSSEVNTANLLESPSSLLLTSCYICSYFSFYILGEKRCHSLKRLRYS 120
GDHRCLVPFRDLNPSSEVNTANLLESPSSLLLTSCYICSYFSFYILGEKRCHSLKRLRYS
Sbjct: 61 GDHRCLVPFRDLNPSSEVNTANLLESPSSLLLTSCYICSYFSFYILGEKRCHSLKRLRYS 120
Query: 121 VCCKVCPNFCACGKENVSGTGQVCTGVHVGAKEQEEPGGTQALRSCGIYCLEERTDKASH 180
VCCKVCPNFCACGKENVSGTGQVCTGVHVGAKEQEEPGGTQALRSCGIYCLEERTDKASH
Sbjct: 121 VCCKVCPNFCACGKENVSGTGQVCTGVHVGAKEQEEPGGTQALRSCGIYCLEERTDKASH 180
Query: 181 EECRERSTLGRPQCTGLTPSLAGESPCPRLLPGSPTVRHLIASSCPGLSDPLPLPPGTLP 240
EECRERSTLGRPQCTGLTPSLAGESPCPRLLPGSPTVRHLIASSCPGLSDPLPLPPGTLP
Sbjct: 181 EECRERSTLGRPQCTGLTPSLAGESPCPRLLPGSPTVRHLIASSCPGLSDPLPLPPGTLP 240
Query: 241 LGS 243
LGS
Sbjct: 241 LGS 243
>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
Length = 1729
Score = 36.6 bits (83), Expect = 0.020
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 130 CACGKENVSGTGQVCTGVHVGAKEQE-----EPGGTQALRSCGIYCLEERTDKASHEECR 184
C+ G+ G GQ+ G ++G ++ E + GG+Q LR CG+ ++ D A +
Sbjct: 1296 CSPGESKELGVGQMDWGNNLGLRDLEVTCDPDSGGSQGLRGCGVGQMDWTQDLAP----Q 1351
Query: 185 ERSTLGRPQCTGLTPSLAGESPCPRLLPGSPTVRHLIASSCPGLSDPLPLPPGTLPLG 242
G P + G S CP P +RH S PGL PL L +G
Sbjct: 1352 NVELFGAPS-EAREHGVGGVSQCP-----EPGLRH-NGSLSPGLEARDPLEARELGVG 1402
>gi|7662386 NLR family, pyrin domain containing 1 isoform 2 [Homo
sapiens]
Length = 1429
Score = 34.3 bits (77), Expect = 0.10
Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 152 KEQEEPGGTQAL-RSCGIYCLEERTDKASHEECRERSTLGRPQCTGL--TPSLAGESPCP 208
+EQE PG L + GIY E R E RE+S GRP + TP A S P
Sbjct: 197 REQEAPGTQWPLDETSGIYYTEIR------EREREKSEKGRPPWAAVVGTPPQAHTSLQP 250
Query: 209 RLLPGSPTVRHLIASSCP 226
P P+VR + S+ P
Sbjct: 251 HHHPWEPSVRESLCSTWP 268
>gi|14719835 NLR family, pyrin domain containing 1 isoform 4 [Homo
sapiens]
Length = 1399
Score = 34.3 bits (77), Expect = 0.10
Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 152 KEQEEPGGTQAL-RSCGIYCLEERTDKASHEECRERSTLGRPQCTGL--TPSLAGESPCP 208
+EQE PG L + GIY E R E RE+S GRP + TP A S P
Sbjct: 197 REQEAPGTQWPLDETSGIYYTEIR------EREREKSEKGRPPWAAVVGTPPQAHTSLQP 250
Query: 209 RLLPGSPTVRHLIASSCP 226
P P+VR + S+ P
Sbjct: 251 HHHPWEPSVRESLCSTWP 268
>gi|74271814 NLR family, pyrin domain containing 1 isoform 5 [Homo
sapiens]
Length = 1375
Score = 34.3 bits (77), Expect = 0.10
Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 152 KEQEEPGGTQAL-RSCGIYCLEERTDKASHEECRERSTLGRPQCTGL--TPSLAGESPCP 208
+EQE PG L + GIY E R E RE+S GRP + TP A S P
Sbjct: 197 REQEAPGTQWPLDETSGIYYTEIR------EREREKSEKGRPPWAAVVGTPPQAHTSLQP 250
Query: 209 RLLPGSPTVRHLIASSCP 226
P P+VR + S+ P
Sbjct: 251 HHHPWEPSVRESLCSTWP 268
>gi|14719833 NLR family, pyrin domain containing 1 isoform 3 [Homo
sapiens]
Length = 1443
Score = 34.3 bits (77), Expect = 0.10
Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 152 KEQEEPGGTQAL-RSCGIYCLEERTDKASHEECRERSTLGRPQCTGL--TPSLAGESPCP 208
+EQE PG L + GIY E R E RE+S GRP + TP A S P
Sbjct: 197 REQEAPGTQWPLDETSGIYYTEIR------EREREKSEKGRPPWAAVVGTPPQAHTSLQP 250
Query: 209 RLLPGSPTVRHLIASSCP 226
P P+VR + S+ P
Sbjct: 251 HHHPWEPSVRESLCSTWP 268
>gi|14719829 NLR family, pyrin domain containing 1 isoform 1 [Homo
sapiens]
Length = 1473
Score = 34.3 bits (77), Expect = 0.10
Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 152 KEQEEPGGTQAL-RSCGIYCLEERTDKASHEECRERSTLGRPQCTGL--TPSLAGESPCP 208
+EQE PG L + GIY E R E RE+S GRP + TP A S P
Sbjct: 197 REQEAPGTQWPLDETSGIYYTEIR------EREREKSEKGRPPWAAVVGTPPQAHTSLQP 250
Query: 209 RLLPGSPTVRHLIASSCP 226
P P+VR + S+ P
Sbjct: 251 HHHPWEPSVRESLCSTWP 268
>gi|169211438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 200
Score = 33.1 bits (74), Expect = 0.22
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 159 GTQALRSCGIYCLEERTDKASHEECRERSTLGRPQCTGLTPSLAGESPCPRLLPGSPTVR 218
G+ +LR C D + E R R +G C P A P PR PG P +R
Sbjct: 104 GSPSLRPC---------DLGATEATRARPRIG---CHSQPPRAA---PKPRACPGFPALR 148
Query: 219 HLIASSCPGLSDPL-PLPP 236
+ A CPG L LPP
Sbjct: 149 KVCALPCPGRGHGLGSLPP 167
>gi|169211910 PREDICTED: hypothetical protein [Homo sapiens]
Length = 200
Score = 33.1 bits (74), Expect = 0.22
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 159 GTQALRSCGIYCLEERTDKASHEECRERSTLGRPQCTGLTPSLAGESPCPRLLPGSPTVR 218
G+ +LR C D + E R R +G C P A P PR PG P +R
Sbjct: 104 GSPSLRPC---------DLGATEATRARPRIG---CHSQPPRAA---PKPRACPGFPALR 148
Query: 219 HLIASSCPGLSDPL-PLPP 236
+ A CPG L LPP
Sbjct: 149 KVCALPCPGRGHGLGSLPP 167
>gi|169211055 PREDICTED: hypothetical protein [Homo sapiens]
Length = 200
Score = 33.1 bits (74), Expect = 0.22
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 159 GTQALRSCGIYCLEERTDKASHEECRERSTLGRPQCTGLTPSLAGESPCPRLLPGSPTVR 218
G+ +LR C D + E R R +G C P A P PR PG P +R
Sbjct: 104 GSPSLRPC---------DLGATEATRARPRIG---CHSQPPRAA---PKPRACPGFPALR 148
Query: 219 HLIASSCPGLSDPL-PLPP 236
+ A CPG L LPP
Sbjct: 149 KVCALPCPGRGHGLGSLPP 167
>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
Length = 447
Score = 32.3 bits (72), Expect = 0.38
Identities = 30/96 (31%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 146 GVHVGAK-EQEEPGGTQALRSCGIYCLEERTDKASHEECRERSTLGRPQCTGLTPSLA-- 202
GV GA E EPG +A RS R + + R+ G TG P+ A
Sbjct: 288 GVGSGAPGEPAEPGRARAPRSAP----SSREPRQTKRRVGSRARAGAGAVTGPCPAAAQG 343
Query: 203 --GESPCPRLLPGSPTVRHLIASSCPGLSDPLPLPP 236
G P PR LP R +S P P PP
Sbjct: 344 ARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGSPP 379
>gi|4885105 chromatin assembly factor 1 subunit B [Homo sapiens]
Length = 559
Score = 31.6 bits (70), Expect = 0.65
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 192 PQCTGLTPSLAGESPCPRLLPGSPTVRHLIASSCPGLSDPLPLPPGT 238
P G TP A ++P P ++ P++ + S PG S+ L P +
Sbjct: 427 PSSPGTTPPQARQAPAPTVIRDPPSITPAVKSPLPGPSEEKTLQPSS 473
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 31.2 bits (69), Expect = 0.85
Identities = 40/163 (24%), Positives = 54/163 (33%), Gaps = 22/163 (13%)
Query: 51 PHGPVSSPLLGDHRCLVPFRDLNPSSEVNTANLLESPSSLLLTSCYICSYFSFYILGEKR 110
P P L +C P PS + +PS L L +C CS
Sbjct: 1112 PEETGQDPALEVEQCSCPPGYRGPSCQDCDTGYTRTPSGLYLGTCERCS----------- 1160
Query: 111 CHSLKRLRYSVCCKVCPNFCACGKENVSGTGQVCTGVHVGAKEQEEPGGTQALRSCGIYC 170
CH +S C+ P AC G C G + G Q + C Y
Sbjct: 1161 CHG-----HSEACE--PETGACQGCQHHTEGPRCEQCQPGYYGDAQRGTPQDCQLCPCYG 1213
Query: 171 LEERTDKASHEECRERSTLGRPQCTGLTPSLAGESPCPRLLPG 213
+ +A+H + T G P C +P +G C R PG
Sbjct: 1214 -DPAAGQAAHTCFLD--TDGHPTCDACSPGHSGRH-CERCAPG 1252
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 30.0 bits (66), Expect = 1.9
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 178 ASHEECRERSTLGRPQCTGLT--------PSLAGESPCPRLLPGSPTVRH--LIASSCPG 227
+S E +R L +P G+ PS SP RLLP +P +AS
Sbjct: 1909 SSEMEQLDRPGLSQPGALGIANPLLAVPAPSPEHSSPSVRLLPSAPQTLPDGPLASPARV 1968
Query: 228 LSDPLPLPPGTLPLG 242
P+PLPPG L G
Sbjct: 1969 PMFPVPLPPGPLEPG 1983
>gi|55741655 anoctamin 8 [Homo sapiens]
Length = 1232
Score = 29.6 bits (65), Expect = 2.5
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 181 EECRERSTLGRPQCTGLTPSLAGESPCPRLLPGSPTVRHLIASSCPGLSDPLPLP 235
E R L +C ++AG P P+ LPG + L P SDPL P
Sbjct: 1160 EGAAPRQALAAAECPPC--AMAGPPPAPQPLPGDASFYSLPPPPLPPTSDPLETP 1212
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 29.6 bits (65), Expect = 2.5
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 185 ERSTL--GRPQCTGLTPSLA-------GESPCPRLLPGSPTVRHLIAS-SCPGLSD 230
E+ST+ P +G TPS A GES R+ PGS + L S + PGLS+
Sbjct: 1187 EKSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISPGSTEITTLPGSTTTPGLSE 1242
Score = 29.6 bits (65), Expect = 2.5
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 185 ERSTL--GRPQCTGLTPSLA-------GESPCPRLLPGSPTVRHLIAS-SCPGLSD 230
E+ST+ P +G TPS A GES R+ PGS + L S + PGLS+
Sbjct: 2270 EKSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISPGSTEITTLPGSTTTPGLSE 2325
Score = 29.6 bits (65), Expect = 2.5
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 185 ERSTL--GRPQCTGLTPSLA-------GESPCPRLLPGSPTVRHLIAS-SCPGLSD 230
E+ST+ P +G TPS A GES R+ PGS + L S + PGLS+
Sbjct: 2744 EKSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISPGSTEITTLPGSTTTPGLSE 2799
Score = 29.6 bits (65), Expect = 2.5
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 185 ERSTL--GRPQCTGLTPSLA-------GESPCPRLLPGSPTVRHLIAS-SCPGLSD 230
E+ST+ P +G TPS A GES R+ PGS + L S + PGLS+
Sbjct: 3827 EKSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISPGSTEITTLPGSTTTPGLSE 3882
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 29.6 bits (65), Expect = 2.5
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 185 ERSTL--GRPQCTGLTPSLA-------GESPCPRLLPGSPTVRHLIAS-SCPGLSD 230
E+ST+ P +G TPS A GES R+ PGS + L S + PGLS+
Sbjct: 674 EKSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISPGSTEITTLPGSTTTPGLSE 729
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 29.6 bits (65), Expect = 2.5
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 131 ACGKENVSGTGQVCTGVHVGAKEQEEP-------GGTQALRSCGIYCLEERTDKASHEEC 183
AC + G+ C G H ++ +E GG Q+L CG C D + C
Sbjct: 3496 ACSRPPTPEGGRPCPGNHTQSRPCQENSTQCTDCGGGQSLHPCGQPCPRSCQDLSPGSVC 3555
Query: 184 RERSTLGRPQC 194
+ S +P C
Sbjct: 3556 QPGSVGCQPTC 3566
>gi|42516567 ubiquitin specific protease 33 isoform 1 [Homo sapiens]
Length = 942
Score = 29.3 bits (64), Expect = 3.2
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 17 NRASLSPSQPLSFQCLKAPATLTWEDEKQQRWGQPHGPVSSPLLGDHRC 65
NRA P +F C+ WE + + G P GP+ + + +C
Sbjct: 835 NRAFQKEDSPATFYCISMQWFREWESFVKGKDGDPPGPIDNTKIAVTKC 883
>gi|42516565 ubiquitin specific protease 33 isoform 2 [Homo sapiens]
Length = 911
Score = 29.3 bits (64), Expect = 3.2
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 17 NRASLSPSQPLSFQCLKAPATLTWEDEKQQRWGQPHGPVSSPLLGDHRC 65
NRA P +F C+ WE + + G P GP+ + + +C
Sbjct: 804 NRAFQKEDSPATFYCISMQWFREWESFVKGKDGDPPGPIDNTKIAVTKC 852
>gi|54873613 agrin [Homo sapiens]
Length = 2045
Score = 29.3 bits (64), Expect = 3.2
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 196 GLTPSLAGESPCPRLL-PGSPTVRHLIASSCPGL--SDPLPLPPGTLPL 241
GL S+ PC + P + + + PGL S LP PPG LPL
Sbjct: 958 GLQISIQSLGPCQEAVAPSTHPTSASVTVTTPGLLLSQALPAPPGALPL 1006
>gi|19743803 fibulin 5 precursor [Homo sapiens]
Length = 448
Score = 29.3 bits (64), Expect = 3.2
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 96 YICSYFSFYILGEKRCHSLKRLRYSVCCKVCPNF-----CACGKE-NVSGTGQVCTGVHV 149
Y CS Y L E +C + RY C ++C N C C ++ G+ C V+
Sbjct: 151 YTCSCTDGYWLLEGQCLDIDECRYGYCQQLCANVPGSYSCTCNPGFTLNEDGRSCQDVNE 210
Query: 150 GAKE 153
A E
Sbjct: 211 CATE 214
>gi|209915594 transcription factor 3 isoform E47 [Homo sapiens]
Length = 651
Score = 28.9 bits (63), Expect = 4.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 227 GLSDPLPLPPGTLPLGS 243
G S PLPLPPG+ P+GS
Sbjct: 242 GGSSPLPLPPGSGPVGS 258
>gi|27777636 transcription factor 3 isoform E12 [Homo sapiens]
Length = 654
Score = 28.9 bits (63), Expect = 4.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 227 GLSDPLPLPPGTLPLGS 243
G S PLPLPPG+ P+GS
Sbjct: 242 GGSSPLPLPPGSGPVGS 258
>gi|148612835 zinc finger protein 207 isoform c [Homo sapiens]
Length = 494
Score = 28.9 bits (63), Expect = 4.2
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 192 PQCTGLTPSLAGESPCPRLLPGSPTVRHLIASSCPGLSDPLPLPPGTLP 240
P L P + P P PG P + A S PG+ + P P T+P
Sbjct: 212 PGIPPLMPGMPPGMPPPVPRPGIPPMTQAQAVSAPGILNRPPAPTATVP 260
>gi|8922511 mitochondrial ribosomal protein S18A [Homo sapiens]
Length = 196
Score = 28.9 bits (63), Expect = 4.2
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 14 LPENRASLSPSQPLSFQCLKAPATLTWEDEKQQRWGQPHGPVSSPLLGDHRC 65
LPE S Q + AP ++ +K RW + PV SPLL D+ C
Sbjct: 135 LPEGVVPKSKPQLNRYLTRWAPGSVKPIYKKGPRWNRVRMPVGSPLLRDNVC 186
>gi|4508017 zinc finger protein 207 isoform a [Homo sapiens]
Length = 478
Score = 28.9 bits (63), Expect = 4.2
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 192 PQCTGLTPSLAGESPCPRLLPGSPTVRHLIASSCPGLSDPLPLPPGTLP 240
P L P + P P PG P + A S PG+ + P P T+P
Sbjct: 196 PGIPPLMPGMPPGMPPPVPRPGIPPMTQAQAVSAPGILNRPPAPTATVP 244
>gi|73808090 zinc finger protein 207 isoform b [Homo sapiens]
Length = 463
Score = 28.9 bits (63), Expect = 4.2
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 192 PQCTGLTPSLAGESPCPRLLPGSPTVRHLIASSCPGLSDPLPLPPGTLP 240
P L P + P P PG P + A S PG+ + P P T+P
Sbjct: 212 PGIPPLMPGMPPGMPPPVPRPGIPPMTQAQAVSAPGILNRPPAPTATVP 260
>gi|226442744 hypothetical protein LOC643965 [Homo sapiens]
Length = 163
Score = 28.5 bits (62), Expect = 5.5
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 203 GESPCPRLLPGSPTVRHLIASSCPGLSDPLPLPPGTLPLG 242
G S +LP P A +CPG S P PL PG L G
Sbjct: 16 GASDTAPMLPRGPPDHQASALTCPGWSGP-PLLPGRLLAG 54
>gi|4758980 pituitary tumor-transforming protein 1 [Homo sapiens]
Length = 202
Score = 28.5 bits (62), Expect = 5.5
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 13/77 (16%)
Query: 23 PSQPLSFQCLKAPATLTWEDEKQQRWGQPHGPVSSPLLGDHRCLVPFRDLNPSSEVNT-- 80
P PL F+ P E+ Q P V +L + R L L P S V
Sbjct: 119 PFNPLDFESFDLP-------EEHQIAHLPLSGVPLMILDEERELEKLFQLGPPSPVKMPS 171
Query: 81 ----ANLLESPSSLLLT 93
+NLL+SPSS+L T
Sbjct: 172 PPWESNLLQSPSSILST 188
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,581,032
Number of Sequences: 37866
Number of extensions: 720027
Number of successful extensions: 2120
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 2078
Number of HSP's gapped (non-prelim): 82
length of query: 243
length of database: 18,247,518
effective HSP length: 99
effective length of query: 144
effective length of database: 14,498,784
effective search space: 2087824896
effective search space used: 2087824896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.