Guide to the Human Genome
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Name: C17orf77 Sequence: fasta or formatted (243aa) NCBI GI: 48255962
Description:

hypothetical protein LOC146723

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         11           1
 C cysteine            7.4         18           2
 D aspartate           2.5          6           1
 E glutamate           7.0         17           2
 F phenylalanine       2.5          6           1
 G glycine             7.8         19           2
 H histidine           2.5          6           1
 I isoleucine          1.6          4           1
 K lysine              3.3          8           1
 L leucine            14.0         34           3
 M methionine          0.4          1           1
 N asparagine          2.5          6           1
 P proline             9.9         24           2
 Q glutamine           3.7          9           2
 R arginine            5.8         14           1
 S serine             11.9         29           2
 T threonine           5.8         14           1
 V valine              4.1         10           1
 W tryptophan          0.8          2           1
 Y tyrosine            2.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC146723 
TNKS1BP1              0.025   tankyrase 1-binding protein 1 
NLRP1                 0.018   NLR family, pyrin domain containing 1 isoform 2 [Homo...
NLRP1                 0.018   NLR family, pyrin domain containing 1 isoform 4 [Hom...
NLRP1                 0.018   NLR family, pyrin domain containing 1 isoform 5 [Hom...
NLRP1                 0.018   NLR family, pyrin domain containing 1 isoform 3 [Hom...
NLRP1                 0.018   NLR family, pyrin domain containing 1 isoform 1 [Hom...
LOC100128440          0.016   PREDICTED: hypothetical protein 
LOC100128440          0.016   PREDICTED: hypothetical protein 
LOC100128440          0.016   PREDICTED: hypothetical protein 
LOC100127930          0.014   PREDICTED: hypothetical protein 
CHAF1B                0.014   chromatin assembly factor 1 subunit B 
HSPG2                 0.012   heparan sulfate proteoglycan 2 
SEC16A                0.010   SEC16 homolog A 
ANO8                  0.010   anoctamin 8 
MUC12                 0.010   PREDICTED: mucin 12 
MUC12                 0.010   PREDICTED: mucin 12, cell surface associated 
SSPO                  0.010   SCO-spondin 
USP33                 0.008   ubiquitin specific protease 33 isoform 1 
USP33                 0.008   ubiquitin specific protease 33 isoform 2 
AGRN                  0.008   agrin 
FBLN5                 0.008   fibulin 5 precursor 
TCF3                  0.008   transcription factor 3 isoform E47 
TCF3                  0.008   transcription factor 3 isoform E12 
ZNF207                0.008   zinc finger protein 207 isoform c 
MRPS18A               0.008   mitochondrial ribosomal protein S18A 
ZNF207                0.008   zinc finger protein 207 isoform a 
ZNF207                0.008   zinc finger protein 207 isoform b 
TMEM88B               0.006   hypothetical protein LOC643965 
PTTG1                 0.006   pituitary tumor-transforming protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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