Guide to the Human Genome
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Name: SPN Sequence: fasta or formatted (400aa) NCBI GI: 4507181
Description:

sialophorin

Referenced in:

Hematopoiesis and Erythrocytes

Other entries for this name:
alt mRNA [400aa] sialophorin
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         32           2
 C cysteine            0.0          0           0
 D aspartate           3.2         13           1
 E glutamate           5.8         23           3
 F phenylalanine       1.0          4           2
 G glycine            11.0         44           2
 H histidine           0.8          3           1
 I isoleucine          1.8          7           1
 K lysine              2.8         11           1
 L leucine             8.8         35           5
 M methionine          2.5         10           2
 N asparagine          1.8          7           1
 P proline             9.8         39           2
 Q glutamine           2.0          8           1
 R arginine            4.0         16           3
 S serine             14.5         58           2
 T threonine          13.5         54           2
 V valine              7.8         31           2
 W tryptophan          0.8          3           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sialophorin 
SPN                   1.000   sialophorin 
MUC17                 0.065   mucin 17 
MUC2                  0.060   mucin 2 precursor 
LOC100294420          0.060   PREDICTED: similar to mucin 2 
MUC5B                 0.056   mucin 5, subtype B, tracheobronchial 
MUC7                  0.052   mucin 7, secreted precursor 
MUC7                  0.052   mucin 7, secreted precursor 
MUC7                  0.052   mucin 7, secreted precursor 
LOC100294249          0.052   PREDICTED: hypothetical protein XP_002344067 
MUC21                 0.052   mucin 21 
LOC729792             0.049   PREDICTED: hypothetical protein 
LOC100133714          0.049   PREDICTED: similar to Mucin-12, partial 
LOC729792             0.049   PREDICTED: hypothetical protein 
MUC12                 0.049   PREDICTED: mucin 12 
LOC729792             0.049   PREDICTED: hypothetical protein 
LOC100294501          0.049   PREDICTED: hypothetical protein 
LOC100294238          0.049   PREDICTED: hypothetical protein 
LOC100294204          0.049   PREDICTED: hypothetical protein 
LOC100294136          0.049   PREDICTED: hypothetical protein 
LOC100294091          0.049   PREDICTED: hypothetical protein 
LOC730401             0.049   PREDICTED: hypothetical protein 
MUC5AC                0.049   mucin 5AC 
MUC6                  0.049   mucin 6, gastric 
MUC12                 0.048   PREDICTED: mucin 12 
LOC100131251          0.048   PREDICTED: hypothetical protein 
LOC100131251          0.048   PREDICTED: hypothetical protein 
LOC100133790          0.046   PREDICTED: intestinal mucin-like, partial 
MUC16                 0.046   mucin 16 
LOC100132635          0.046   PREDICTED: similar to mucin 5, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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