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Search of human proteins with 48255898
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
(1572 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 3160 0.0
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 3148 0.0
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 2423 0.0
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 2419 0.0
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 2418 0.0
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 2413 0.0
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 2402 0.0
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 2402 0.0
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 2385 0.0
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 449 e-125
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 440 e-123
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 434 e-121
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 408 e-113
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 402 e-111
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 402 e-111
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 402 e-111
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 392 e-108
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 392 e-108
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 390 e-108
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 387 e-107
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 379 e-105
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 375 e-103
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 364 e-100
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 362 1e-99
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 347 4e-95
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 303 1e-81
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 301 3e-81
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 301 3e-81
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 269 1e-71
gi|4557565 excision repair cross-complementing rodent repair def... 263 1e-69
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 3160 bits (8192), Expect = 0.0
Identities = 1572/1572 (100%), Positives = 1572/1572 (100%)
Query: 1 MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTM 60
MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTM
Sbjct: 1 MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTM 60
Query: 61 GSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGY 120
GSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGY
Sbjct: 61 GSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGY 120
Query: 121 MSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLH 180
MSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLH
Sbjct: 121 MSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLH 180
Query: 181 QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQ 240
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQ
Sbjct: 181 QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQ 240
Query: 241 QQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAA 300
QQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAA
Sbjct: 241 QQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAA 300
Query: 301 AVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQE 360
AVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQE
Sbjct: 301 AVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQE 360
Query: 361 LENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKR 420
LENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKR
Sbjct: 361 LENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKR 420
Query: 421 QTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAV 480
QTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAV
Sbjct: 421 QTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAV 480
Query: 481 ATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANL 540
ATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANL
Sbjct: 481 ATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANL 540
Query: 541 TNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHT 600
TNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHT
Sbjct: 541 TNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHT 600
Query: 601 ETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKI 660
ETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKI
Sbjct: 601 ETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKI 660
Query: 661 LLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLI 720
LLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLI
Sbjct: 661 LLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLI 720
Query: 721 NGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIV 780
NGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIV
Sbjct: 721 NGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIV 780
Query: 781 PLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHIL 840
PLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHIL
Sbjct: 781 PLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHIL 840
Query: 841 AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLP 900
AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLP
Sbjct: 841 AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLP 900
Query: 901 TIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPE 960
TIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPE
Sbjct: 901 TIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPE 960
Query: 961 KVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPY 1020
KVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPY
Sbjct: 961 KVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPY 1020
Query: 1021 MFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMT 1080
MFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMT
Sbjct: 1021 MFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMT 1080
Query: 1081 IMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADT 1140
IMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADT
Sbjct: 1081 IMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADT 1140
Query: 1141 VVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1200
VVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ
Sbjct: 1141 VVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1200
Query: 1201 AGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDR 1260
AGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDR
Sbjct: 1201 AGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDR 1260
Query: 1261 RREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDAL 1320
RREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDAL
Sbjct: 1261 RREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDAL 1320
Query: 1321 TEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNP 1380
TEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNP
Sbjct: 1321 TEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNP 1380
Query: 1381 PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN 1440
PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN
Sbjct: 1381 PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN 1440
Query: 1441 HKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNE 1500
HKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNE
Sbjct: 1441 HKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNE 1500
Query: 1501 EEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDE 1560
EEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDE
Sbjct: 1501 EEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDE 1560
Query: 1561 REQSEGSGTDDE 1572
REQSEGSGTDDE
Sbjct: 1561 REQSEGSGTDDE 1572
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 3148 bits (8163), Expect = 0.0
Identities = 1572/1590 (98%), Positives = 1572/1590 (98%), Gaps = 18/1590 (1%)
Query: 1 MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTM 60
MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTM
Sbjct: 1 MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTM 60
Query: 61 GSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGY 120
GSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGY
Sbjct: 61 GSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGY 120
Query: 121 MSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLH 180
MSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLH
Sbjct: 121 MSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLH 180
Query: 181 QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQ 240
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQ
Sbjct: 181 QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQ 240
Query: 241 QQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAA 300
QQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAA
Sbjct: 241 QQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAA 300
Query: 301 AVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQE 360
AVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQE
Sbjct: 301 AVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQE 360
Query: 361 LENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKR 420
LENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKR
Sbjct: 361 LENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKR 420
Query: 421 QTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAV 480
QTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAV
Sbjct: 421 QTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAV 480
Query: 481 ATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANL 540
ATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANL
Sbjct: 481 ATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANL 540
Query: 541 TNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHT 600
TNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHT
Sbjct: 541 TNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHT 600
Query: 601 ETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKI 660
ETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKI
Sbjct: 601 ETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKI 660
Query: 661 LLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLI 720
LLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLI
Sbjct: 661 LLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLI 720
Query: 721 NGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIV 780
NGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIV
Sbjct: 721 NGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIV 780
Query: 781 PLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHIL 840
PLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHIL
Sbjct: 781 PLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHIL 840
Query: 841 AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLP 900
AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLP
Sbjct: 841 AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLP 900
Query: 901 TIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPE 960
TIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPE
Sbjct: 901 TIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPE 960
Query: 961 KVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPY 1020
KVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPY
Sbjct: 961 KVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPY 1020
Query: 1021 MFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMT 1080
MFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMT
Sbjct: 1021 MFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMT 1080
Query: 1081 IMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADT 1140
IMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADT
Sbjct: 1081 IMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADT 1140
Query: 1141 VVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1200
VVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ
Sbjct: 1141 VVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1200
Query: 1201 AGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDR 1260
AGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDR
Sbjct: 1201 AGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDR 1260
Query: 1261 RREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDAL 1320
RREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDAL
Sbjct: 1261 RREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDAL 1320
Query: 1321 TEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNP 1380
TEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNP
Sbjct: 1321 TEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNP 1380
Query: 1381 PKLTKQMNAIIDTVINYKD------------------SSGRQLSEVFIQLPSRKELPEYY 1422
PKLTKQMNAIIDTVINYKD SSGRQLSEVFIQLPSRKELPEYY
Sbjct: 1381 PKLTKQMNAIIDTVINYKDRCNVEKVPSNSQLEIEGNSSGRQLSEVFIQLPSRKELPEYY 1440
Query: 1423 ELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFK 1482
ELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFK
Sbjct: 1441 ELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFK 1500
Query: 1483 SARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNR 1542
SARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNR
Sbjct: 1501 SARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNR 1560
Query: 1543 GKAKPVVSDFDSDEEQDEREQSEGSGTDDE 1572
GKAKPVVSDFDSDEEQDEREQSEGSGTDDE
Sbjct: 1561 GKAKPVVSDFDSDEEQDEREQSEGSGTDDE 1590
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 2423 bits (6280), Expect = 0.0
Identities = 1246/1632 (76%), Positives = 1368/1632 (83%), Gaps = 81/1632 (4%)
Query: 1 MSTPTDP-GAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPT 59
MSTP P G P PGPSPGPGPSPG +LGPSPGP SPGS HSMMGPSPGPPS HP+PT
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGP--SPGSAHSMMGPSPGPPSAGHPIPT 58
Query: 60 MGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPP-HPGMGPPQSPMDQHSQ 118
G +PQ+ MHQMHKP++ +H+KG+ +D MKG GMR H GMGPP SPMDQHSQ
Sbjct: 59 QGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQ 118
Query: 119 GYMSPHPSPLGAPEHVSSPMSGGGPTP-PQMPPSQPGALIPG-DPQAMSQPNRGPSPFSP 176
GY PSPLG EH SSP+ GP+ PQM GA + G DPQA+ Q NRGP+PF+
Sbjct: 119 GY----PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174
Query: 177 VQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQ 236
QLHQLRAQI+AYKMLARGQPLP+ LQ+AVQGKR +PG+QQQ
Sbjct: 175 NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG- 233
Query: 237 QQPQQQPPQPQTQQQQQPALVNYNRPSG------------------PGPELSGP------ 272
P P PA NY+RP G PG GP
Sbjct: 234 -------PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPE 286
Query: 273 ----------STPQKLPVPAPGGRPSPAPPAAAQPPAAA-VPGPSVPQPA-PGQPSPVLQ 320
STPQKL P P GRPSPAPPA PPAA+ V P P P QP+P++
Sbjct: 287 GPMANAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQPAQPAPMVP 344
Query: 321 LQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVEL 380
L QKQSRI+PIQKP+GLDPVEILQEREYRLQARIAHRIQELENLPGSL DLRTKAT+EL
Sbjct: 345 LHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIEL 404
Query: 381 KALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQ 440
KALRLLNFQRQLRQEVV CMRRDT LETALN+KAYKRSKRQ+LREAR+TEKLEKQQKIEQ
Sbjct: 405 KALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQ 464
Query: 441 ERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEK 500
ERKRRQKHQEYLNSILQHAKDFKEYHRSV GKIQKL+KAVAT+HANTEREQKKE ERIEK
Sbjct: 465 ERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEK 524
Query: 501 ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRR 560
ERMRRLMAEDEEGYRKLIDQKKD+RLAYLLQQTDEYVANLT LV +HK AQ AKEKKK++
Sbjct: 525 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKK 584
Query: 561 RRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAW 620
++KK ENAEG A+GPDGEP+DE+SQMSDLPVKV H E+GK+L G +APKA QL+AW
Sbjct: 585 KKKKA--ENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAW 642
Query: 621 LEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQET-------EEKILLDPNSEEVSEKD 673
LEMNPGYEVAPRSDSEES S+ EEE+EEEE + E+K + DP+S++VSE D
Sbjct: 643 LEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVD 702
Query: 674 AKQIIETAKQDVDDEYSM-QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGL 732
A+ IIE AKQDVDDEY + Q ARG QSYY VAHA++ERV+KQSAL++NG LK YQ++GL
Sbjct: 703 ARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGL 762
Query: 733 EWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEF 792
EW+VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR+NGP+LIIVPLSTLSNW YEF
Sbjct: 763 EWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEF 822
Query: 793 DKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 852
DKWAPSVVK+SYKG+PA RR+ VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE
Sbjct: 823 DKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882
Query: 853 GHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 912
GHRMKNHHCKLTQVLNTHYVAPRR+LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW
Sbjct: 883 GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942
Query: 913 FNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSA 972
FNAPFAMTGE+VDLNEEETILIIRRLHKVLRPFLLRRLKKEVE+QLPEKVEYVIKCDMSA
Sbjct: 943 FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002
Query: 973 LQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEH 1032
LQ++LYRHMQAKG+LLTDGSEKDKKGKGG KTLMNTIMQLRKICNHPYMFQHIEESF+EH
Sbjct: 1003 LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEH 1062
Query: 1033 LGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFL 1092
LG++ G++ G +LYRASGKFELLDRILPKLRATNH+VLLFCQMTSLMTIMEDYFA+R F
Sbjct: 1063 LGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122
Query: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
YLRLDGTTK+EDR LLK FNEPGS+YFIFLLSTRAGGLGLNLQ+ADTV+IFDSDWNPHQ
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1212
DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242
Query: 1213 RRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKP 1272
RRAFLQAILEHEE++EEEDEVPDDET+NQMIAR EEEFDLFMRMD+DRRRE+ARNPKRKP
Sbjct: 1243 RRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKP 1302
Query: 1273 RLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDG 1332
RLMEEDELPSWIIKDDAEVERLTCEEEEEK+FGRGSR R++VDYSD+LTEKQWL+AIE+G
Sbjct: 1303 RLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEG 1362
Query: 1333 NLEEMEEEVRLKKRKRRRNVDKDPA------------KEDVEKAKKRRGRPPAEKLSPNP 1380
LEE+EEEVR KK R+R D D K+D K +K+RGRPPAEKLSPNP
Sbjct: 1363 TLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNP 1422
Query: 1381 PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN 1440
P LTK+M I+D VI YKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN
Sbjct: 1423 PNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN 1482
Query: 1441 HKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNE 1500
HKYRSL DLEKDVMLLC NAQTFNLEGS IYEDSIVLQSVF S RQKI KE++SE E +E
Sbjct: 1483 HKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESE 1542
Query: 1501 EEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGK-GKKRPNRG-KAKPVVSDFDSDEEQ 1558
EEEE +EE SESE++SVKVKIKL +K +K +D+ K G++RP+RG +AKPVVSD DS+EEQ
Sbjct: 1543 EEEEGEEEGSESESRSVKVKIKLGRK-EKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQ 1601
Query: 1559 DEREQSEGSGTD 1570
+E GS D
Sbjct: 1602 EEDRSGSGSEED 1613
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 2419 bits (6268), Expect = 0.0
Identities = 1246/1633 (76%), Positives = 1368/1633 (83%), Gaps = 82/1633 (5%)
Query: 1 MSTPTDP-GAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPT 59
MSTP P G P PGPSPGPGPSPG +LGPSPGP SPGS HSMMGPSPGPPS HP+PT
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGP--SPGSAHSMMGPSPGPPSAGHPIPT 58
Query: 60 MGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPP-HPGMGPPQSPMDQHSQ 118
G +PQ+ MHQMHKP++ +H+KG+ +D MKG GMR H GMGPP SPMDQHSQ
Sbjct: 59 QGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQ 118
Query: 119 GYMSPHPSPLGAPEHVSSPMSGGGPTP-PQMPPSQPGALIPG-DPQAMSQPNRGPSPFSP 176
GY PSPLG EH SSP+ GP+ PQM GA + G DPQA+ Q NRGP+PF+
Sbjct: 119 GY----PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174
Query: 177 VQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQ 236
QLHQLRAQI+AYKMLARGQPLP+ LQ+AVQGKR +PG+QQQ
Sbjct: 175 NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG- 233
Query: 237 QQPQQQPPQPQTQQQQQPALVNYNRPSG------------------PGPELSGP------ 272
P P PA NY+RP G PG GP
Sbjct: 234 -------PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPE 286
Query: 273 ----------STPQKLPVPAPGGRPSPAPPAAAQPPAAA-VPGPSVPQPA-PGQPSPVLQ 320
STPQKL P P GRPSPAPPA PPAA+ V P P P QP+P++
Sbjct: 287 GPMANAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQPAQPAPMVP 344
Query: 321 LQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVEL 380
L QKQSRI+PIQKP+GLDPVEILQEREYRLQARIAHRIQELENLPGSL DLRTKAT+EL
Sbjct: 345 LHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIEL 404
Query: 381 KALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQ 440
KALRLLNFQRQLRQEVV CMRRDT LETALN+KAYKRSKRQ+LREAR+TEKLEKQQKIEQ
Sbjct: 405 KALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQ 464
Query: 441 ERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEK 500
ERKRRQKHQEYLNSILQHAKDFKEYHRSV GKIQKL+KAVAT+HANTEREQKKE ERIEK
Sbjct: 465 ERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEK 524
Query: 501 ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRR 560
ERMRRLMAEDEEGYRKLIDQKKD+RLAYLLQQTDEYVANLT LV +HK AQ AKEKKK++
Sbjct: 525 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKK 584
Query: 561 RRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAW 620
++KK ENAEG A+GPDGEP+DE+SQMSDLPVKV H E+GK+L G +APKA QL+AW
Sbjct: 585 KKKKA--ENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAW 642
Query: 621 LEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQET-------EEKILLDPNSEEVSEKD 673
LEMNPGYEVAPRSDSEES S+ EEE+EEEE + E+K + DP+S++VSE D
Sbjct: 643 LEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVD 702
Query: 674 AKQIIETAKQDVDDEYSM-QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGL 732
A+ IIE AKQDVDDEY + Q ARG QSYY VAHA++ERV+KQSAL++NG LK YQ++GL
Sbjct: 703 ARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGL 762
Query: 733 EWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEF 792
EW+VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR+NGP+LIIVPLSTLSNW YEF
Sbjct: 763 EWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEF 822
Query: 793 DKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 852
DKWAPSVVK+SYKG+PA RR+ VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE
Sbjct: 823 DKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882
Query: 853 GHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 912
GHRMKNHHCKLTQVLNTHYVAPRR+LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW
Sbjct: 883 GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942
Query: 913 FNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSA 972
FNAPFAMTGE+VDLNEEETILIIRRLHKVLRPFLLRRLKKEVE+QLPEKVEYVIKCDMSA
Sbjct: 943 FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002
Query: 973 LQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEH 1032
LQ++LYRHMQAKG+LLTDGSEKDKKGKGG KTLMNTIMQLRKICNHPYMFQHIEESF+EH
Sbjct: 1003 LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEH 1062
Query: 1033 LGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFL 1092
LG++ G++ G +LYRASGKFELLDRILPKLRATNH+VLLFCQMTSLMTIMEDYFA+R F
Sbjct: 1063 LGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122
Query: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
YLRLDGTTK+EDR LLK FNEPGS+YFIFLLSTRAGGLGLNLQ+ADTV+IFDSDWNPHQ
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1212
DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242
Query: 1213 RRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKP 1272
RRAFLQAILEHEE++EEEDEVPDDET+NQMIAR EEEFDLFMRMD+DRRRE+ARNPKRKP
Sbjct: 1243 RRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKP 1302
Query: 1273 RLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDG 1332
RLMEEDELPSWIIKDDAEVERLTCEEEEEK+FGRGSR R++VDYSD+LTEKQWL+AIE+G
Sbjct: 1303 RLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEG 1362
Query: 1333 NLEEMEEEVRLKKRKRRRNVDKDPA------------KEDVEKAKKRRGRPPAEKLSPNP 1380
LEE+EEEVR KK R+R D D K+D K +K+RGRPPAEKLSPNP
Sbjct: 1363 TLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNP 1422
Query: 1381 PKLTKQMNAIIDTVINYKD-SSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIR 1439
P LTK+M I+D VI YKD SSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIR
Sbjct: 1423 PNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIR 1482
Query: 1440 NHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESN 1499
NHKYRSL DLEKDVMLLC NAQTFNLEGS IYEDSIVLQSVF S RQKI KE++SE E +
Sbjct: 1483 NHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEES 1542
Query: 1500 EEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGK-GKKRPNRG-KAKPVVSDFDSDEE 1557
EEEEE +EE SESE++SVKVKIKL +K +K +D+ K G++RP+RG +AKPVVSD DS+EE
Sbjct: 1543 EEEEEGEEEGSESESRSVKVKIKLGRK-EKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEE 1601
Query: 1558 QDEREQSEGSGTD 1570
Q+E GS D
Sbjct: 1602 QEEDRSGSGSEED 1614
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 2418 bits (6266), Expect = 0.0
Identities = 1246/1635 (76%), Positives = 1368/1635 (83%), Gaps = 84/1635 (5%)
Query: 1 MSTPTDP-GAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPT 59
MSTP P G P PGPSPGPGPSPG +LGPSPGP SPGS HSMMGPSPGPPS HP+PT
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGP--SPGSAHSMMGPSPGPPSAGHPIPT 58
Query: 60 MGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPP-HPGMGPPQSPMDQHSQ 118
G +PQ+ MHQMHKP++ +H+KG+ +D MKG GMR H GMGPP SPMDQHSQ
Sbjct: 59 QGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQ 118
Query: 119 GYMSPHPSPLGAPEHVSSPMSGGGPTP-PQMPPSQPGALIPG-DPQAMSQPNRGPSPFSP 176
GY PSPLG EH SSP+ GP+ PQM GA + G DPQA+ Q NRGP+PF+
Sbjct: 119 GY----PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174
Query: 177 VQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQ 236
QLHQLRAQI+AYKMLARGQPLP+ LQ+AVQGKR +PG+QQQ
Sbjct: 175 NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG- 233
Query: 237 QQPQQQPPQPQTQQQQQPALVNYNRPSG------------------PGPELSGP------ 272
P P PA NY+RP G PG GP
Sbjct: 234 -------PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPE 286
Query: 273 ----------STPQKLPVPAPGGRPSPAPPAAAQPPAAA-VPGPSVPQPA-PGQPSPVLQ 320
STPQKL P P GRPSPAPPA PPAA+ V P P P QP+P++
Sbjct: 287 GPMANAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQPAQPAPMVP 344
Query: 321 LQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVEL 380
L QKQSRI+PIQKP+GLDPVEILQEREYRLQARIAHRIQELENLPGSL DLRTKAT+EL
Sbjct: 345 LHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIEL 404
Query: 381 KALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQ 440
KALRLLNFQRQLRQEVV CMRRDT LETALN+KAYKRSKRQ+LREAR+TEKLEKQQKIEQ
Sbjct: 405 KALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQ 464
Query: 441 ERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEK 500
ERKRRQKHQEYLNSILQHAKDFKEYHRSV GKIQKL+KAVAT+HANTEREQKKE ERIEK
Sbjct: 465 ERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEK 524
Query: 501 ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRR 560
ERMRRLMAEDEEGYRKLIDQKKD+RLAYLLQQTDEYVANLT LV +HK AQ AKEKKK++
Sbjct: 525 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKK 584
Query: 561 RRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAW 620
++KK ENAEG A+GPDGEP+DE+SQMSDLPVKV H E+GK+L G +APKA QL+AW
Sbjct: 585 KKKKA--ENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAW 642
Query: 621 LEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQET-------EEKILLDPNSEEVSEKD 673
LEMNPGYEVAPRSDSEES S+ EEE+EEEE + E+K + DP+S++VSE D
Sbjct: 643 LEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVD 702
Query: 674 AKQIIETAKQDVDDEYSM-QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGL 732
A+ IIE AKQDVDDEY + Q ARG QSYY VAHA++ERV+KQSAL++NG LK YQ++GL
Sbjct: 703 ARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGL 762
Query: 733 EWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEF 792
EW+VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR+NGP+LIIVPLSTLSNW YEF
Sbjct: 763 EWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEF 822
Query: 793 DKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 852
DKWAPSVVK+SYKG+PA RR+ VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE
Sbjct: 823 DKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882
Query: 853 GHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 912
GHRMKNHHCKLTQVLNTHYVAPRR+LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW
Sbjct: 883 GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942
Query: 913 FNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSA 972
FNAPFAMTGE+VDLNEEETILIIRRLHKVLRPFLLRRLKKEVE+QLPEKVEYVIKCDMSA
Sbjct: 943 FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002
Query: 973 LQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEH 1032
LQ++LYRHMQAKG+LLTDGSEKDKKGKGG KTLMNTIMQLRKICNHPYMFQHIEESF+EH
Sbjct: 1003 LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEH 1062
Query: 1033 LGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFL 1092
LG++ G++ G +LYRASGKFELLDRILPKLRATNH+VLLFCQMTSLMTIMEDYFA+R F
Sbjct: 1063 LGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122
Query: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
YLRLDGTTK+EDR LLK FNEPGS+YFIFLLSTRAGGLGLNLQ+ADTV+IFDSDWNPHQ
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1212
DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242
Query: 1213 RRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKP 1272
RRAFLQAILEHEE++EEEDEVPDDET+NQMIAR EEEFDLFMRMD+DRRRE+ARNPKRKP
Sbjct: 1243 RRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKP 1302
Query: 1273 RLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAI 1329
RLMEEDELPSWIIKDDAEVERLTCEEEEEK+FGRGSR R++VDYSD+LTEKQW L+AI
Sbjct: 1303 RLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKTLKAI 1362
Query: 1330 EDGNLEEMEEEVRLKKRKRRRNVDKDPA------------KEDVEKAKKRRGRPPAEKLS 1377
E+G LEE+EEEVR KK R+R D D K+D K +K+RGRPPAEKLS
Sbjct: 1363 EEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLS 1422
Query: 1378 PNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKER 1437
PNPP LTK+M I+D VI YKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKER
Sbjct: 1423 PNPPNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKER 1482
Query: 1438 IRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDE 1497
IRNHKYRSL DLEKDVMLLC NAQTFNLEGS IYEDSIVLQSVF S RQKI KE++SE E
Sbjct: 1483 IRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGE 1542
Query: 1498 SNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGK-GKKRPNRG-KAKPVVSDFDSD 1555
+EEEEE +EE SESE++SVKVKIKL +K +K +D+ K G++RP+RG +AKPVVSD DS+
Sbjct: 1543 ESEEEEEGEEEGSESESRSVKVKIKLGRK-EKAQDRLKGGRRRPSRGSRAKPVVSDDDSE 1601
Query: 1556 EEQDEREQSEGSGTD 1570
EEQ+E GS D
Sbjct: 1602 EEQEEDRSGSGSEED 1616
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 2413 bits (6254), Expect = 0.0
Identities = 1246/1636 (76%), Positives = 1368/1636 (83%), Gaps = 85/1636 (5%)
Query: 1 MSTPTDP-GAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPT 59
MSTP P G P PGPSPGPGPSPG +LGPSPGP SPGS HSMMGPSPGPPS HP+PT
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGP--SPGSAHSMMGPSPGPPSAGHPIPT 58
Query: 60 MGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPP-HPGMGPPQSPMDQHSQ 118
G +PQ+ MHQMHKP++ +H+KG+ +D MKG GMR H GMGPP SPMDQHSQ
Sbjct: 59 QGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQ 118
Query: 119 GYMSPHPSPLGAPEHVSSPMSGGGPTP-PQMPPSQPGALIPG-DPQAMSQPNRGPSPFSP 176
GY PSPLG EH SSP+ GP+ PQM GA + G DPQA+ Q NRGP+PF+
Sbjct: 119 GY----PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174
Query: 177 VQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQ 236
QLHQLRAQI+AYKMLARGQPLP+ LQ+AVQGKR +PG+QQQ
Sbjct: 175 NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG- 233
Query: 237 QQPQQQPPQPQTQQQQQPALVNYNRPSG------------------PGPELSGP------ 272
P P PA NY+RP G PG GP
Sbjct: 234 -------PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPE 286
Query: 273 ----------STPQKLPVPAPGGRPSPAPPAAAQPPAAA-VPGPSVPQPA-PGQPSPVLQ 320
STPQKL P P GRPSPAPPA PPAA+ V P P P QP+P++
Sbjct: 287 GPMANAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQPAQPAPMVP 344
Query: 321 LQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVEL 380
L QKQSRI+PIQKP+GLDPVEILQEREYRLQARIAHRIQELENLPGSL DLRTKAT+EL
Sbjct: 345 LHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIEL 404
Query: 381 KALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQ 440
KALRLLNFQRQLRQEVV CMRRDT LETALN+KAYKRSKRQ+LREAR+TEKLEKQQKIEQ
Sbjct: 405 KALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQ 464
Query: 441 ERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEK 500
ERKRRQKHQEYLNSILQHAKDFKEYHRSV GKIQKL+KAVAT+HANTEREQKKE ERIEK
Sbjct: 465 ERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEK 524
Query: 501 ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRR 560
ERMRRLMAEDEEGYRKLIDQKKD+RLAYLLQQTDEYVANLT LV +HK AQ AKEKKK++
Sbjct: 525 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKK 584
Query: 561 RRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAW 620
++KK ENAEG A+GPDGEP+DE+SQMSDLPVKV H E+GK+L G +APKA QL+AW
Sbjct: 585 KKKKA--ENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAW 642
Query: 621 LEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQET-------EEKILLDPNSEEVSEKD 673
LEMNPGYEVAPRSDSEES S+ EEE+EEEE + E+K + DP+S++VSE D
Sbjct: 643 LEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVD 702
Query: 674 AKQIIETAKQDVDDEYSM-QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGL 732
A+ IIE AKQDVDDEY + Q ARG QSYY VAHA++ERV+KQSAL++NG LK YQ++GL
Sbjct: 703 ARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGL 762
Query: 733 EWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEF 792
EW+VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR+NGP+LIIVPLSTLSNW YEF
Sbjct: 763 EWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEF 822
Query: 793 DKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 852
DKWAPSVVK+SYKG+PA RR+ VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE
Sbjct: 823 DKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882
Query: 853 GHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 912
GHRMKNHHCKLTQVLNTHYVAPRR+LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW
Sbjct: 883 GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942
Query: 913 FNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSA 972
FNAPFAMTGE+VDLNEEETILIIRRLHKVLRPFLLRRLKKEVE+QLPEKVEYVIKCDMSA
Sbjct: 943 FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002
Query: 973 LQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEH 1032
LQ++LYRHMQAKG+LLTDGSEKDKKGKGG KTLMNTIMQLRKICNHPYMFQHIEESF+EH
Sbjct: 1003 LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEH 1062
Query: 1033 LGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFL 1092
LG++ G++ G +LYRASGKFELLDRILPKLRATNH+VLLFCQMTSLMTIMEDYFA+R F
Sbjct: 1063 LGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122
Query: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
YLRLDGTTK+EDR LLK FNEPGS+YFIFLLSTRAGGLGLNLQ+ADTV+IFDSDWNPHQ
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1212
DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242
Query: 1213 RRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKP 1272
RRAFLQAILEHEE++EEEDEVPDDET+NQMIAR EEEFDLFMRMD+DRRRE+ARNPKRKP
Sbjct: 1243 RRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKP 1302
Query: 1273 RLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAI 1329
RLMEEDELPSWIIKDDAEVERLTCEEEEEK+FGRGSR R++VDYSD+LTEKQW L+AI
Sbjct: 1303 RLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKTLKAI 1362
Query: 1330 EDGNLEEMEEEVRLKKRKRRRNVDKDPA------------KEDVEKAKKRRGRPPAEKLS 1377
E+G LEE+EEEVR KK R+R D D K+D K +K+RGRPPAEKLS
Sbjct: 1363 EEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLS 1422
Query: 1378 PNPPKLTKQMNAIIDTVINYKD-SSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKE 1436
PNPP LTK+M I+D VI YKD SSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKE
Sbjct: 1423 PNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKE 1482
Query: 1437 RIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESED 1496
RIRNHKYRSL DLEKDVMLLC NAQTFNLEGS IYEDSIVLQSVF S RQKI KE++SE
Sbjct: 1483 RIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEG 1542
Query: 1497 ESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGK-GKKRPNRG-KAKPVVSDFDS 1554
E +EEEEE +EE SESE++SVKVKIKL +K +K +D+ K G++RP+RG +AKPVVSD DS
Sbjct: 1543 EESEEEEEGEEEGSESESRSVKVKIKLGRK-EKAQDRLKGGRRRPSRGSRAKPVVSDDDS 1601
Query: 1555 DEEQDEREQSEGSGTD 1570
+EEQ+E GS D
Sbjct: 1602 EEEQEEDRSGSGSEED 1617
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 2402 bits (6224), Expect = 0.0
Identities = 1246/1666 (74%), Positives = 1368/1666 (82%), Gaps = 115/1666 (6%)
Query: 1 MSTPTDP-GAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPT 59
MSTP P G P PGPSPGPGPSPG +LGPSPGP SPGS HSMMGPSPGPPS HP+PT
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGP--SPGSAHSMMGPSPGPPSAGHPIPT 58
Query: 60 MGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPP-HPGMGPPQSPMDQHSQ 118
G +PQ+ MHQMHKP++ +H+KG+ +D MKG GMR H GMGPP SPMDQHSQ
Sbjct: 59 QGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQ 118
Query: 119 GYMSPHPSPLGAPEHVSSPMSGGGPTP-PQMPPSQPGALIPG-DPQAMSQPNRGPSPFSP 176
GY PSPLG EH SSP+ GP+ PQM GA + G DPQA+ Q NRGP+PF+
Sbjct: 119 GY----PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174
Query: 177 VQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQ 236
QLHQLRAQI+AYKMLARGQPLP+ LQ+AVQGKR +PG+QQQ
Sbjct: 175 NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG- 233
Query: 237 QQPQQQPPQPQTQQQQQPALVNYNRPSG------------------PGPELSGP------ 272
P P PA NY+RP G PG GP
Sbjct: 234 -------PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPE 286
Query: 273 ----------STPQKLPVPAPGGRPSPAPPAAAQPPAAA-VPGPSVPQPA-PGQPSPVLQ 320
STPQKL P P GRPSPAPPA PPAA+ V P P P QP+P++
Sbjct: 287 GPMANAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQPAQPAPMVP 344
Query: 321 LQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVEL 380
L QKQSRI+PIQKP+GLDPVEILQEREYRLQARIAHRIQELENLPGSL DLRTKAT+EL
Sbjct: 345 LHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIEL 404
Query: 381 KALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQ 440
KALRLLNFQRQLRQEVV CMRRDT LETALN+KAYKRSKRQ+LREAR+TEKLEKQQKIEQ
Sbjct: 405 KALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQ 464
Query: 441 ERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEK 500
ERKRRQKHQEYLNSILQHAKDFKEYHRSV GKIQKL+KAVAT+HANTEREQKKE ERIEK
Sbjct: 465 ERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEK 524
Query: 501 ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRR 560
ERMRRLMAEDEEGYRKLIDQKKD+RLAYLLQQTDEYVANLT LV +HK AQ AKEKKK++
Sbjct: 525 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKK 584
Query: 561 RRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAW 620
++KK ENAEG A+GPDGEP+DE+SQMSDLPVKV H E+GK+L G +APKA QL+AW
Sbjct: 585 KKKKA--ENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAW 642
Query: 621 LEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQET-------EEKILLDPNSEEVSEKD 673
LEMNPGYEVAPRSDSEES S+ EEE+EEEE + E+K + DP+S++VSE D
Sbjct: 643 LEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVD 702
Query: 674 AKQIIETAKQDVDDEYSM-QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGL 732
A+ IIE AKQDVDDEY + Q ARG QSYY VAHA++ERV+KQSAL++NG LK YQ++GL
Sbjct: 703 ARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGL 762
Query: 733 EWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEF 792
EW+VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR+NGP+LIIVPLSTLSNW YEF
Sbjct: 763 EWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEF 822
Query: 793 DKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 852
DKWAPSVVK+SYKG+PA RR+ VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE
Sbjct: 823 DKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882
Query: 853 GHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 912
GHRMKNHHCKLTQVLNTHYVAPRR+LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW
Sbjct: 883 GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942
Query: 913 FNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSA 972
FNAPFAMTGE+VDLNEEETILIIRRLHKVLRPFLLRRLKKEVE+QLPEKVEYVIKCDMSA
Sbjct: 943 FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002
Query: 973 LQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEH 1032
LQ++LYRHMQAKG+LLTDGSEKDKKGKGG KTLMNTIMQLRKICNHPYMFQHIEESF+EH
Sbjct: 1003 LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEH 1062
Query: 1033 LGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFL 1092
LG++ G++ G +LYRASGKFELLDRILPKLRATNH+VLLFCQMTSLMTIMEDYFA+R F
Sbjct: 1063 LGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122
Query: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
YLRLDGTTK+EDR LLK FNEPGS+YFIFLLSTRAGGLGLNLQ+ADTV+IFDSDWNPHQ
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1212
DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242
Query: 1213 RRAFLQAILEHEEENE---------------------------------EEDEVPDDETL 1239
RRAFLQAILEHEE++E EEDEVPDDET+
Sbjct: 1243 RRAFLQAILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETV 1302
Query: 1240 NQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE 1299
NQMIAR EEEFDLFMRMD+DRRRE+ARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE
Sbjct: 1303 NQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE 1362
Query: 1300 EEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPA-- 1357
EEK+FGRGSR R++VDYSD+LTEKQWL+AIE+G LEE+EEEVR KK R+R D D
Sbjct: 1363 EEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSS 1422
Query: 1358 ----------KEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSS-GRQLS 1406
K+D K +K+RGRPPAEKLSPNPP LTK+M I+D VI YKDSS GRQLS
Sbjct: 1423 TPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLS 1482
Query: 1407 EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLE 1466
EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSL DLEKDVMLLC NAQTFNLE
Sbjct: 1483 EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLE 1542
Query: 1467 GSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKK 1526
GS IYEDSIVLQSVF S RQKI KE++SE E +EEEEE +EE SESE++SVKVKIKL +K
Sbjct: 1543 GSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRK 1602
Query: 1527 DDKGRDKGK-GKKRPNRG-KAKPVVSDFDSDEEQDEREQSEGSGTD 1570
+K +D+ K G++RP+RG +AKPVVSD DS+EEQ+E GS D
Sbjct: 1603 -EKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSEED 1647
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 2402 bits (6224), Expect = 0.0
Identities = 1246/1666 (74%), Positives = 1368/1666 (82%), Gaps = 115/1666 (6%)
Query: 1 MSTPTDP-GAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPT 59
MSTP P G P PGPSPGPGPSPG +LGPSPGP SPGS HSMMGPSPGPPS HP+PT
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGP--SPGSAHSMMGPSPGPPSAGHPIPT 58
Query: 60 MGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPP-HPGMGPPQSPMDQHSQ 118
G +PQ+ MHQMHKP++ +H+KG+ +D MKG GMR H GMGPP SPMDQHSQ
Sbjct: 59 QGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQ 118
Query: 119 GYMSPHPSPLGAPEHVSSPMSGGGPTP-PQMPPSQPGALIPG-DPQAMSQPNRGPSPFSP 176
GY PSPLG EH SSP+ GP+ PQM GA + G DPQA+ Q NRGP+PF+
Sbjct: 119 GY----PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174
Query: 177 VQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQ 236
QLHQLRAQI+AYKMLARGQPLP+ LQ+AVQGKR +PG+QQQ
Sbjct: 175 NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG- 233
Query: 237 QQPQQQPPQPQTQQQQQPALVNYNRPSG------------------PGPELSGP------ 272
P P PA NY+RP G PG GP
Sbjct: 234 -------PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPE 286
Query: 273 ----------STPQKLPVPAPGGRPSPAPPAAAQPPAAA-VPGPSVPQPA-PGQPSPVLQ 320
STPQKL P P GRPSPAPPA PPAA+ V P P P QP+P++
Sbjct: 287 GPMANAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQPAQPAPMVP 344
Query: 321 LQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVEL 380
L QKQSRI+PIQKP+GLDPVEILQEREYRLQARIAHRIQELENLPGSL DLRTKAT+EL
Sbjct: 345 LHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIEL 404
Query: 381 KALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQ 440
KALRLLNFQRQLRQEVV CMRRDT LETALN+KAYKRSKRQ+LREAR+TEKLEKQQKIEQ
Sbjct: 405 KALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQ 464
Query: 441 ERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEK 500
ERKRRQKHQEYLNSILQHAKDFKEYHRSV GKIQKL+KAVAT+HANTEREQKKE ERIEK
Sbjct: 465 ERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEK 524
Query: 501 ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRR 560
ERMRRLMAEDEEGYRKLIDQKKD+RLAYLLQQTDEYVANLT LV +HK AQ AKEKKK++
Sbjct: 525 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKK 584
Query: 561 RRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAW 620
++KK ENAEG A+GPDGEP+DE+SQMSDLPVKV H E+GK+L G +APKA QL+AW
Sbjct: 585 KKKKA--ENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAW 642
Query: 621 LEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQET-------EEKILLDPNSEEVSEKD 673
LEMNPGYEVAPRSDSEES S+ EEE+EEEE + E+K + DP+S++VSE D
Sbjct: 643 LEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVD 702
Query: 674 AKQIIETAKQDVDDEYSM-QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGL 732
A+ IIE AKQDVDDEY + Q ARG QSYY VAHA++ERV+KQSAL++NG LK YQ++GL
Sbjct: 703 ARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGL 762
Query: 733 EWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEF 792
EW+VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR+NGP+LIIVPLSTLSNW YEF
Sbjct: 763 EWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEF 822
Query: 793 DKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 852
DKWAPSVVK+SYKG+PA RR+ VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE
Sbjct: 823 DKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882
Query: 853 GHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 912
GHRMKNHHCKLTQVLNTHYVAPRR+LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW
Sbjct: 883 GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942
Query: 913 FNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSA 972
FNAPFAMTGE+VDLNEEETILIIRRLHKVLRPFLLRRLKKEVE+QLPEKVEYVIKCDMSA
Sbjct: 943 FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002
Query: 973 LQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEH 1032
LQ++LYRHMQAKG+LLTDGSEKDKKGKGG KTLMNTIMQLRKICNHPYMFQHIEESF+EH
Sbjct: 1003 LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEH 1062
Query: 1033 LGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFL 1092
LG++ G++ G +LYRASGKFELLDRILPKLRATNH+VLLFCQMTSLMTIMEDYFA+R F
Sbjct: 1063 LGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122
Query: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
YLRLDGTTK+EDR LLK FNEPGS+YFIFLLSTRAGGLGLNLQ+ADTV+IFDSDWNPHQ
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1212
DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242
Query: 1213 RRAFLQAILEHEEENE---------------------------------EEDEVPDDETL 1239
RRAFLQAILEHEE++E EEDEVPDDET+
Sbjct: 1243 RRAFLQAILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETV 1302
Query: 1240 NQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE 1299
NQMIAR EEEFDLFMRMD+DRRRE+ARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE
Sbjct: 1303 NQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE 1362
Query: 1300 EEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPA-- 1357
EEK+FGRGSR R++VDYSD+LTEKQWL+AIE+G LEE+EEEVR KK R+R D D
Sbjct: 1363 EEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSS 1422
Query: 1358 ----------KEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSS-GRQLS 1406
K+D K +K+RGRPPAEKLSPNPP LTK+M I+D VI YKDSS GRQLS
Sbjct: 1423 TPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLS 1482
Query: 1407 EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLE 1466
EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSL DLEKDVMLLC NAQTFNLE
Sbjct: 1483 EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLE 1542
Query: 1467 GSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKK 1526
GS IYEDSIVLQSVF S RQKI KE++SE E +EEEEE +EE SESE++SVKVKIKL +K
Sbjct: 1543 GSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRK 1602
Query: 1527 DDKGRDKGK-GKKRPNRG-KAKPVVSDFDSDEEQDEREQSEGSGTD 1570
+K +D+ K G++RP+RG +AKPVVSD DS+EEQ+E GS D
Sbjct: 1603 -EKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSEED 1647
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 2385 bits (6181), Expect = 0.0
Identities = 1246/1698 (73%), Positives = 1368/1698 (80%), Gaps = 147/1698 (8%)
Query: 1 MSTPTDP-GAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPT 59
MSTP P G P PGPSPGPGPSPG +LGPSPGP SPGS HSMMGPSPGPPS HP+PT
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGP--SPGSAHSMMGPSPGPPSAGHPIPT 58
Query: 60 MGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPP-HPGMGPPQSPMDQHSQ 118
G +PQ+ MHQMHKP++ +H+KG+ +D MKG GMR H GMGPP SPMDQHSQ
Sbjct: 59 QGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQ 118
Query: 119 GYMSPHPSPLGAPEHVSSPMSGGGPTP-PQMPPSQPGALIPG-DPQAMSQPNRGPSPFSP 176
GY PSPLG EH SSP+ GP+ PQM GA + G DPQA+ Q NRGP+PF+
Sbjct: 119 GY----PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174
Query: 177 VQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQ 236
QLHQLRAQI+AYKMLARGQPLP+ LQ+AVQGKR +PG+QQQ
Sbjct: 175 NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG- 233
Query: 237 QQPQQQPPQPQTQQQQQPALVNYNRPSG------------------PGPELSGP------ 272
P P PA NY+RP G PG GP
Sbjct: 234 -------PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPE 286
Query: 273 ----------STPQKLPVPAPGGRPSPAPPAAAQPPAAA-VPGPSVPQPA-PGQPSPVLQ 320
STPQKL P P GRPSPAPPA PPAA+ V P P P QP+P++
Sbjct: 287 GPMANAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQPAQPAPMVP 344
Query: 321 LQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVEL 380
L QKQSRI+PIQKP+GLDPVEILQEREYRLQARIAHRIQELENLPGSL DLRTKAT+EL
Sbjct: 345 LHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIEL 404
Query: 381 KALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQ 440
KALRLLNFQRQLRQEVV CMRRDT LETALN+KAYKRSKRQ+LREAR+TEKLEKQQKIEQ
Sbjct: 405 KALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQ 464
Query: 441 ERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEK 500
ERKRRQKHQEYLNSILQHAKDFKEYHRSV GKIQKL+KAVAT+HANTEREQKKE ERIEK
Sbjct: 465 ERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEK 524
Query: 501 ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRR 560
ERMRRLMAEDEEGYRKLIDQKKD+RLAYLLQQTDEYVANLT LV +HK AQ AKEKKK++
Sbjct: 525 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKK 584
Query: 561 RRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAW 620
++KK ENAEG A+GPDGEP+DE+SQMSDLPVKV H E+GK+L G +APKA QL+AW
Sbjct: 585 KKKKA--ENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAW 642
Query: 621 LEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQET-------EEKILLDPNSEEVSEKD 673
LEMNPGYEVAPRSDSEES S+ EEE+EEEE + E+K + DP+S++VSE D
Sbjct: 643 LEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVD 702
Query: 674 AKQIIETAKQDVDDEYSM-QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGL 732
A+ IIE AKQDVDDEY + Q ARG QSYY VAHA++ERV+KQSAL++NG LK YQ++GL
Sbjct: 703 ARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGL 762
Query: 733 EWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEF 792
EW+VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR+NGP+LIIVPLSTLSNW YEF
Sbjct: 763 EWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEF 822
Query: 793 DKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 852
DKWAPSVVK+SYKG+PA RR+ VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE
Sbjct: 823 DKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882
Query: 853 GHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 912
GHRMKNHHCKLTQVLNTHYVAPRR+LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW
Sbjct: 883 GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942
Query: 913 FNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSA 972
FNAPFAMTGE+VDLNEEETILIIRRLHKVLRPFLLRRLKKEVE+QLPEKVEYVIKCDMSA
Sbjct: 943 FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002
Query: 973 LQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEH 1032
LQ++LYRHMQAKG+LLTDGSEKDKKGKGG KTLMNTIMQLRKICNHPYMFQHIEESF+EH
Sbjct: 1003 LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEH 1062
Query: 1033 LGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFL 1092
LG++ G++ G +LYRASGKFELLDRILPKLRATNH+VLLFCQMTSLMTIMEDYFA+R F
Sbjct: 1063 LGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122
Query: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
YLRLDGTTK+EDR LLK FNEPGS+YFIFLLSTRAGGLGLNLQ+ADTV+IFDSDWNPHQ
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1212
DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242
Query: 1213 RRAFLQAILEHEEENE---------------------------------EEDEVPDDETL 1239
RRAFLQAILEHEE++E EEDEVPDDET+
Sbjct: 1243 RRAFLQAILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETV 1302
Query: 1240 NQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE 1299
NQMIAR EEEFDLFMRMD+DRRRE+ARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE
Sbjct: 1303 NQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE 1362
Query: 1300 EEKIFGRGSRQRRDVDYSDALTEKQWL--------------------------------R 1327
EEK+FGRGSR R++VDYSD+LTEKQWL +
Sbjct: 1363 EEKMFGRGSRHRKEVDYSDSLTEKQWLKKITGKDIHDTASSVARGLQFQRGLQFCTRASK 1422
Query: 1328 AIEDGNLEEMEEEVRLKKRKRRRNVDKDPA------------KEDVEKAKKRRGRPPAEK 1375
AIE+G LEE+EEEVR KK R+R D D K+D K +K+RGRPPAEK
Sbjct: 1423 AIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEK 1482
Query: 1376 LSPNPPKLTKQMNAIIDTVINYKD-SSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKI 1434
LSPNPP LTK+M I+D VI YKD SSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKI
Sbjct: 1483 LSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKI 1542
Query: 1435 KERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEES 1494
KERIRNHKYRSL DLEKDVMLLC NAQTFNLEGS IYEDSIVLQSVF S RQKI KE++S
Sbjct: 1543 KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDS 1602
Query: 1495 EDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGK-GKKRPNRG-KAKPVVSDF 1552
E E +EEEEE +EE SESE++SVKVKIKL +K +K +D+ K G++RP+RG +AKPVVSD
Sbjct: 1603 EGEESEEEEEGEEEGSESESRSVKVKIKLGRK-EKAQDRLKGGRRRPSRGSRAKPVVSDD 1661
Query: 1553 DSDEEQDEREQSEGSGTD 1570
DS+EEQ+E GS D
Sbjct: 1662 DSEEEQEEDRSGSGSEED 1679
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 449 bits (1154), Expect = e-125
Identities = 262/660 (39%), Positives = 385/660 (58%), Gaps = 63/660 (9%)
Query: 610 EAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEV 669
+APK+ + EM+P YE ++D + ++ E Q + +K P + ++
Sbjct: 71 KAPKSEK-----EMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKL 125
Query: 670 S----EKDAKQIIETA-------KQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSAL 718
+KD KQ + +A + +DE + S + S + R E +
Sbjct: 126 GRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSN--------VCIRFEVSPSY 177
Query: 719 LINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLI 778
+ G L+ YQ++GL W++SLY N +NGILADEMGLGKT+QTIAL+ YL ++ + GP+++
Sbjct: 178 VKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMV 237
Query: 779 IVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLV-PQLRSGKFNVLLTTYEYIIKDK 837
+VP STL NW EF +W PS+ I + G R + + ++ G+++V +T+YE +IK+K
Sbjct: 238 LVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEK 297
Query: 838 HILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNF 897
+ K W+Y+++DE HR+KN KL++++ + + R+LLTGTPLQN L ELWALLNF
Sbjct: 298 SVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR-EFKSTNRLLLTGTPLQNNLHELWALLNF 356
Query: 898 LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 957
LLP +F S F+ WF+ + ++ ++ RLH VL+PFLLRR+K +VE
Sbjct: 357 LLPDVFNSADDFDSWFDTKNCLGDQK----------LVERLHAVLKPFLLRRIKTDVEKS 406
Query: 958 LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICN 1017
LP K E I +S +Q+ Y IL+ D + GK L+N +MQLRK CN
Sbjct: 407 LPPKKEIKIYLGLSKMQREWYTK-----ILMKDIDVLNSSGKMDKMRLLNILMQLRKCCN 461
Query: 1018 HPYMFQHIEE----SFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFC 1073
HPY+F E + EH+ SN SGK +LD++L KL+ RVL+F
Sbjct: 462 HPYLFDGAEPGPPYTTDEHI-VSN-----------SGKMVVLDKLLAKLKEQGSRVLIFS 509
Query: 1074 QMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGL 1133
QMT L+ I+EDY +R + Y RLDG T E+R ++ FN P S FIF+LSTRAGGLG+
Sbjct: 510 QMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGI 569
Query: 1134 NLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLN 1193
NL +AD V+++DSDWNP DLQA DRAHRIGQ+ VRV RL T N+VEE+I+ A+ KL
Sbjct: 570 NLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLR 629
Query: 1194 VDQKVIQAG-MFDQKSSSHERRAFLQAI---LEHEEENEEEDEVPDDETLNQMIARREEE 1249
+D VIQ G + DQ+S+ + LQ I H ++E + DE + ++ R E++
Sbjct: 630 LDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELT--DEDITTILERGEKK 687
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 440 bits (1131), Expect = e-123
Identities = 262/672 (38%), Positives = 385/672 (57%), Gaps = 75/672 (11%)
Query: 610 EAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEV 669
+APK+ + EM+P YE ++D + ++ E Q + +K P + ++
Sbjct: 71 KAPKSEK-----EMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKL 125
Query: 670 S----EKDAKQIIETA-------KQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSAL 718
+KD KQ + +A + +DE + S + S + R E +
Sbjct: 126 GRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSN--------VCIRFEVSPSY 177
Query: 719 LINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLI 778
+ G L+ YQ++GL W++SLY N +NGILADEMGLGKT+QTIAL+ YL ++ + GP+++
Sbjct: 178 VKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMV 237
Query: 779 IVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLV-PQLRSGKFNVLLTTYEYIIKDK 837
+VP STL NW EF +W PS+ I + G R + + ++ G+++V +T+YE +IK+K
Sbjct: 238 LVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEK 297
Query: 838 HILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNF 897
+ K W+Y+++DE HR+KN KL++++ + + R+LLTGTPLQN L ELWALLNF
Sbjct: 298 SVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR-EFKSTNRLLLTGTPLQNNLHELWALLNF 356
Query: 898 LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 957
LLP +F S F+ WF+ + ++ ++ RLH VL+PFLLRR+K +VE
Sbjct: 357 LLPDVFNSADDFDSWFDTKNCLGDQK----------LVERLHAVLKPFLLRRIKTDVEKS 406
Query: 958 LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICN 1017
LP K E I +S +Q+ Y IL+ D + GK L+N +MQLRK CN
Sbjct: 407 LPPKKEIKIYLGLSKMQREWYTK-----ILMKDIDVLNSSGKMDKMRLLNILMQLRKCCN 461
Query: 1018 HPYMFQHIEE----SFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFC 1073
HPY+F E + EH+ SN SGK +LD++L KL+ RVL+F
Sbjct: 462 HPYLFDGAEPGPPYTTDEHI-VSN-----------SGKMVVLDKLLAKLKEQGSRVLIFS 509
Query: 1074 QMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRA------------ALLKKFNEPGSQYFI 1121
QMT L+ I+EDY +R + Y RLDG T E+R ++ FN P S FI
Sbjct: 510 QMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFI 569
Query: 1122 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1181
F+LSTRAGGLG+NL +AD V+++DSDWNP DLQA DRAHRIGQ+ VRV RL T N+VE
Sbjct: 570 FMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 629
Query: 1182 EKILAAAKYKLNVDQKVIQAG-MFDQKSSSHERRAFLQAI---LEHEEENEEEDEVPDDE 1237
E+I+ A+ KL +D VIQ G + DQ+S+ + LQ I H ++E + DE
Sbjct: 630 ERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELT--DE 687
Query: 1238 TLNQMIARREEE 1249
+ ++ R E++
Sbjct: 688 DITTILERGEKK 699
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 434 bits (1115), Expect = e-121
Identities = 244/637 (38%), Positives = 363/637 (56%), Gaps = 64/637 (10%)
Query: 632 RSDSEESDSDYEEEDEEEESSR-----QETE---------------EKILLDPNSEEVSE 671
+ + +E D YEE+ + + ++R ++TE + + P + +
Sbjct: 70 QKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKK 129
Query: 672 KDAKQIIETA-------KQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTL 724
+ + ++ +Q+ D+E + S A + R E + + G L
Sbjct: 130 DEKQNLLSVGDYRHRRTEQEEDEELLTESSK---------ATNVCTRFEDSPSYVKWGKL 180
Query: 725 KHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLST 784
+ YQ++GL W++SLY N +NGILADEMGLGKT+QTI+L+ Y+ ++ + GP++++VP ST
Sbjct: 181 RDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKST 240
Query: 785 LSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAKI 843
L NW EF +W P++ + G R + V L G+++V +T+YE +IK+K + K
Sbjct: 241 LHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKF 300
Query: 844 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF 903
W+Y+++DE HR+KN KL++++ + R+LLTGTPLQN L ELW+LLNFLLP +F
Sbjct: 301 NWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF 359
Query: 904 KSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVE 963
S F+ WF+ + ++ ++ RLH VLRPFLLRR+K +VE LP K E
Sbjct: 360 NSADDFDSWFDTNNCLGDQK----------LVERLHMVLRPFLLRRIKADVEKSLPPKKE 409
Query: 964 YVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ 1023
I +S +Q+ Y IL+ D + GK L+N +MQLRK CNHPY+F
Sbjct: 410 VKIYVGLSKMQREWYTR-----ILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFD 464
Query: 1024 HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIME 1083
E Y+ + L SGK +LD++LPKL+ RVL+F QMT ++ I+E
Sbjct: 465 GAEPGPP----YTTDM----HLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILE 516
Query: 1084 DYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVI 1143
DY +RN+ Y RLDG T ++R + +NEP S F+F+LSTRAGGLG+NL AD V++
Sbjct: 517 DYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVIL 576
Query: 1144 FDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAG- 1202
+DSDWNP DLQA DRAHRIGQ VRV R T N+VEE+I+ A+ KL +D VIQ G
Sbjct: 577 YDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636
Query: 1203 MFDQKSSSHERRAFLQAILEHEEE--NEEEDEVPDDE 1237
+ DQ + + LQ I +E E+ D++
Sbjct: 637 LVDQNLNKIGKDEMLQMIRHGATHVFASKESEITDED 673
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 408 bits (1048), Expect = e-113
Identities = 274/708 (38%), Positives = 387/708 (54%), Gaps = 76/708 (10%)
Query: 712 VEKQSALL--INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEH 769
++KQ A L N L+ YQL+GL W+ + N + ILADEMGLGKTIQTI+ ++YL
Sbjct: 470 LKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQ 529
Query: 770 KRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVP------QLRSGKF 823
+L GP+LI+VPLSTL++W EF+ WAP + + Y G R ++ Q + KF
Sbjct: 530 HQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKF 589
Query: 824 NVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTP 883
N L+TTYE ++KDK +L I W ++ VDE HR+KN L + L + + R+L+TGTP
Sbjct: 590 NALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTL-IDFKSNHRLLITGTP 648
Query: 884 LQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLR 943
LQN L ELW+LL+F++P F+ FE E E + LHKVL
Sbjct: 649 LQNSLKELWSLLHFIMPEKFEFWEDFE-----------EDHGKGRENGY---QSLHKVLE 694
Query: 944 PFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAK 1003
PFLLRR+KK+VE LP KVE +++ +MSALQK Y K IL + K +G
Sbjct: 695 PFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYY-----KWILTRNYKALAKGTRGSTS 749
Query: 1004 TLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLR 1063
+N +M+L+K CNH Y+ + EE+ E NG L R+SGK LLD++L +LR
Sbjct: 750 GFLNIVMELKKCCNHCYLIKPPEENERE-----NGQEILLSLIRSSGKLILLDKLLTRLR 804
Query: 1064 ATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFL 1123
+RVL+F QM ++ I+ +Y +++ + RLDG+ K E R L FN GS+ F FL
Sbjct: 805 ERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFL 864
Query: 1124 LSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 1183
LSTRAGGLG+NL +ADTVVIFDSDWNP DLQAQ RAHRIGQ+ +V + RL T +VEE+
Sbjct: 865 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEE 924
Query: 1184 ILAAAKYKLNVDQKVIQ------AGMFDQKSSSHERRAF----LQAIL---------EHE 1224
I+ AK K+ +D VIQ + + S F L AIL E E
Sbjct: 925 IIERAKKKMVLDHLVIQRMDTTGRTILENNSGRSNSNPFNKEELTAILKFGAEDLFKELE 984
Query: 1225 EENEEEDEVPDDETL-------NQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEE 1277
E E E+ DE L N++ +E ++ ED + +P +
Sbjct: 985 GEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWD 1044
Query: 1278 DELPSWIIKDDAEVERLTCEEEEEKIFG----RGSRQRRDVDYSDALTEKQ---WLRAIE 1330
+ +P K E ER ++E E+I+ R S ++ + SD+ TE + +
Sbjct: 1045 EIIPEEQRKKVEEEER---QKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQRSSAS 1101
Query: 1331 DGNLEEMEEEVRLKKRKRRRNVDKDPAK--EDVE-----KAKKRRGRP 1371
+ E+ +++ + K+R R R+V KD + D E KA K+ G P
Sbjct: 1102 ESETEDSDDDKKPKRRGRPRSVRKDLVEGFTDAEIRRFIKAYKKFGLP 1149
Score = 35.8 bits (81), Expect = 0.34
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 1482 KSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRP- 1540
+ RQ +E+ ++ S +E+E+ ESE E K VK + + ++ K + KK+P
Sbjct: 140 RGQRQLKKQEKWKQEPSEDEQEQGTSAESEPEQKKVKARRPVPRRT---VPKPRVKKQPK 196
Query: 1541 -NRGKAKPVVSDFDSDEEQDE 1560
RGK K S D D++ DE
Sbjct: 197 TQRGKRKKQDSS-DEDDDDDE 216
Score = 32.0 bits (71), Expect = 4.8
Identities = 62/298 (20%), Positives = 118/298 (39%), Gaps = 32/298 (10%)
Query: 449 QEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMA 508
Q + SI+QH ++F+ H+S+ ++ K T + + E ++ R L+
Sbjct: 1216 QVNVKSIIQHEEEFEMLHKSIPVDPEEKKKYCLTCRV---KAAHFDVEWGVEDDSRLLLG 1272
Query: 509 EDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEE 568
E GY K D L+ TD+ + T+ + KQ Q + + RK ++
Sbjct: 1273 IYEHGYGNWELIKTDPE----LKLTDKILPVETDKKPQGKQLQTRADYLLKLLRKGLEKK 1328
Query: 569 NA-EGGESALGPDGEP-IDESSQMSDLPVKVTHTETGKVLFGPE-----APKASQLDAWL 621
A GGE A +P + + +++ L E G L P + + D L
Sbjct: 1329 GAVTGGEEAKLKKRKPRVKKENKVPRL-----KEEHGIELSSPRHSDNPSEEGEVKDDGL 1383
Query: 622 EMNPGYEVAPRSDSEE------SDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAK 675
E +P + + +++E S +E D+E + S+ + E+ D S S++
Sbjct: 1384 EKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQG 1443
Query: 676 QIIETA-------KQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKH 726
+ TA +D DD+ + + + V A+ + + L + L+H
Sbjct: 1444 PVHITAGSEPVPIGEDEDDDLDQETFSICKERMRPVKKALKQLDKPDKGLNVQEQLEH 1501
Score = 31.6 bits (70), Expect = 6.3
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 1485 RQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNR-- 1542
++K K+E E++ + +D+E + KS K K D K K K + P
Sbjct: 1389 KKKQKKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQGPVHIT 1448
Query: 1543 GKAKPVVSDFDSDEEQDE 1560
++PV D D++ D+
Sbjct: 1449 AGSEPVPIGEDEDDDLDQ 1466
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 402 bits (1033), Expect = e-111
Identities = 306/982 (31%), Positives = 462/982 (47%), Gaps = 128/982 (13%)
Query: 632 RSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSM 691
+S EE + + E +E ++S + E + DP +K K++
Sbjct: 660 QSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKEL-------------- 705
Query: 692 QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEM 751
G S T + + + GTL YQL+GL W+ + + ILADEM
Sbjct: 706 --QGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEM 763
Query: 752 GLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMR 811
GLGKTIQTI + L + GP+L+ PLST+ NW EF WAP ++Y G R
Sbjct: 764 GLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSR 823
Query: 812 RSLVPQ--------LRSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVD 851
+ ++ GK F+VLLT+YE I D+ L IRW ++VD
Sbjct: 824 AIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD 883
Query: 852 EGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQ 911
E HR+KN+ K +VLN Y ++LLTGTPLQN L EL+ LLNFL P F + F +
Sbjct: 884 EAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLE 942
Query: 912 WFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMS 971
F D+++E+ I ++LH +L P +LRRLK +V +P K E +++ ++S
Sbjct: 943 EF----------ADISKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS 989
Query: 972 ALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAE 1031
+QK Y++ IL + + +G G +L+N +M L+K CNHPY+F + E
Sbjct: 990 PMQKKYYKY-----ILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAME 1041
Query: 1032 HLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNF 1091
+G G L ++SGK LL ++L KL+ HRVL+F QMT ++ ++ED+ + +
Sbjct: 1042 SPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGY 1101
Query: 1092 LYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPH 1151
Y R+DG R + +FN PG+Q F FLLSTRAGGLG+NL ADTV+IFDSDWNPH
Sbjct: 1102 KYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPH 1161
Query: 1152 QDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSH 1211
D+QA RAHRIGQ N+V + R T SVEE+I AK K+ + V++ G+ + S
Sbjct: 1162 NDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMS 1221
Query: 1212 ERRAFLQAIL----------EHEEENEEEDEVP---DDETLNQMIARREEEFDLFMRMDM 1258
++ L IL E+E EN+EED D+E + +++ R + D D+
Sbjct: 1222 KQE--LDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDV 1276
Query: 1259 DRRREDARNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKI--- 1303
E + K ++ E +E+ IIK + V+ R E+++E +
Sbjct: 1277 QNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN 1336
Query: 1304 FGRGSRQRRDVDYSDALTEKQWLRA-------IEDGNLEEMEEEVRLKKRKRRRNVDK-- 1354
G+G R R+ V+Y+DA E Q ++ ED + +E E R KR+ R DK
Sbjct: 1337 LGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPL 1396
Query: 1355 -----------------DPAKEDVEKAKKRRGRPPAEKLSPN------PPKLTKQMNAII 1391
++ A R G PP + + K K+ A +
Sbjct: 1397 PPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYV 1456
Query: 1392 DTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLGD 1448
+ + G SE F R+ L L R V KK++E + S+ +
Sbjct: 1457 SLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPE 1516
Query: 1449 LEKDVMLLCHNAQTFN--LEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEED 1506
L D + + + S ++ S S A E+ E E+EE
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEA 1576
Query: 1507 EEESESEAKSVKVKIKLNKKDD 1528
E + E K+ ++ K+ + D
Sbjct: 1577 ENQEEKPEKNSRIGEKMETEAD 1598
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 402 bits (1033), Expect = e-111
Identities = 306/982 (31%), Positives = 462/982 (47%), Gaps = 128/982 (13%)
Query: 632 RSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSM 691
+S EE + + E +E ++S + E + DP +K K++
Sbjct: 660 QSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKEL-------------- 705
Query: 692 QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEM 751
G S T + + + GTL YQL+GL W+ + + ILADEM
Sbjct: 706 --QGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEM 763
Query: 752 GLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMR 811
GLGKTIQTI + L + GP+L+ PLST+ NW EF WAP ++Y G R
Sbjct: 764 GLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSR 823
Query: 812 RSLVPQ--------LRSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVD 851
+ ++ GK F+VLLT+YE I D+ L IRW ++VD
Sbjct: 824 AIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD 883
Query: 852 EGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQ 911
E HR+KN+ K +VLN Y ++LLTGTPLQN L EL+ LLNFL P F + F +
Sbjct: 884 EAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLE 942
Query: 912 WFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMS 971
F D+++E+ I ++LH +L P +LRRLK +V +P K E +++ ++S
Sbjct: 943 EF----------ADISKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS 989
Query: 972 ALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAE 1031
+QK Y++ IL + + +G G +L+N +M L+K CNHPY+F + E
Sbjct: 990 PMQKKYYKY-----ILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAME 1041
Query: 1032 HLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNF 1091
+G G L ++SGK LL ++L KL+ HRVL+F QMT ++ ++ED+ + +
Sbjct: 1042 SPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGY 1101
Query: 1092 LYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPH 1151
Y R+DG R + +FN PG+Q F FLLSTRAGGLG+NL ADTV+IFDSDWNPH
Sbjct: 1102 KYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPH 1161
Query: 1152 QDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSH 1211
D+QA RAHRIGQ N+V + R T SVEE+I AK K+ + V++ G+ + S
Sbjct: 1162 NDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMS 1221
Query: 1212 ERRAFLQAIL----------EHEEENEEEDEVP---DDETLNQMIARREEEFDLFMRMDM 1258
++ L IL E+E EN+EED D+E + +++ R + D D+
Sbjct: 1222 KQE--LDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDV 1276
Query: 1259 DRRREDARNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKI--- 1303
E + K ++ E +E+ IIK + V+ R E+++E +
Sbjct: 1277 QNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN 1336
Query: 1304 FGRGSRQRRDVDYSDALTEKQWLRA-------IEDGNLEEMEEEVRLKKRKRRRNVDK-- 1354
G+G R R+ V+Y+DA E Q ++ ED + +E E R KR+ R DK
Sbjct: 1337 LGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPL 1396
Query: 1355 -----------------DPAKEDVEKAKKRRGRPPAEKLSPN------PPKLTKQMNAII 1391
++ A R G PP + + K K+ A +
Sbjct: 1397 PPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYV 1456
Query: 1392 DTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLGD 1448
+ + G SE F R+ L L R V KK++E + S+ +
Sbjct: 1457 SLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPE 1516
Query: 1449 LEKDVMLLCHNAQTFN--LEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEED 1506
L D + + + S ++ S S A E+ E E+EE
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEA 1576
Query: 1507 EEESESEAKSVKVKIKLNKKDD 1528
E + E K+ ++ K+ + D
Sbjct: 1577 ENQEEKPEKNSRIGEKMETEAD 1598
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 402 bits (1033), Expect = e-111
Identities = 306/982 (31%), Positives = 462/982 (47%), Gaps = 128/982 (13%)
Query: 632 RSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSM 691
+S EE + + E +E ++S + E + DP +K K++
Sbjct: 719 QSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKEL-------------- 764
Query: 692 QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEM 751
G S T + + + GTL YQL+GL W+ + + ILADEM
Sbjct: 765 --QGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEM 822
Query: 752 GLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMR 811
GLGKTIQTI + L + GP+L+ PLST+ NW EF WAP ++Y G R
Sbjct: 823 GLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSR 882
Query: 812 RSLVPQ--------LRSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVD 851
+ ++ GK F+VLLT+YE I D+ L IRW ++VD
Sbjct: 883 AIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD 942
Query: 852 EGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQ 911
E HR+KN+ K +VLN Y ++LLTGTPLQN L EL+ LLNFL P F + F +
Sbjct: 943 EAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLE 1001
Query: 912 WFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMS 971
F D+++E+ I ++LH +L P +LRRLK +V +P K E +++ ++S
Sbjct: 1002 EF----------ADISKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS 1048
Query: 972 ALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAE 1031
+QK Y++ IL + + +G G +L+N +M L+K CNHPY+F + E
Sbjct: 1049 PMQKKYYKY-----ILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAME 1100
Query: 1032 HLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNF 1091
+G G L ++SGK LL ++L KL+ HRVL+F QMT ++ ++ED+ + +
Sbjct: 1101 SPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGY 1160
Query: 1092 LYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPH 1151
Y R+DG R + +FN PG+Q F FLLSTRAGGLG+NL ADTV+IFDSDWNPH
Sbjct: 1161 KYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPH 1220
Query: 1152 QDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSH 1211
D+QA RAHRIGQ N+V + R T SVEE+I AK K+ + V++ G+ + S
Sbjct: 1221 NDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMS 1280
Query: 1212 ERRAFLQAIL----------EHEEENEEEDEVP---DDETLNQMIARREEEFDLFMRMDM 1258
++ L IL E+E EN+EED D+E + +++ R + D D+
Sbjct: 1281 KQE--LDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDV 1335
Query: 1259 DRRREDARNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKI--- 1303
E + K ++ E +E+ IIK + V+ R E+++E +
Sbjct: 1336 QNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN 1395
Query: 1304 FGRGSRQRRDVDYSDALTEKQWLRA-------IEDGNLEEMEEEVRLKKRKRRRNVDK-- 1354
G+G R R+ V+Y+DA E Q ++ ED + +E E R KR+ R DK
Sbjct: 1396 LGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPL 1455
Query: 1355 -----------------DPAKEDVEKAKKRRGRPPAEKLSPN------PPKLTKQMNAII 1391
++ A R G PP + + K K+ A +
Sbjct: 1456 PPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYV 1515
Query: 1392 DTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLGD 1448
+ + G SE F R+ L L R V KK++E + S+ +
Sbjct: 1516 SLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPE 1575
Query: 1449 LEKDVMLLCHNAQTFN--LEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEED 1506
L D + + + S ++ S S A E+ E E+EE
Sbjct: 1576 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEA 1635
Query: 1507 EEESESEAKSVKVKIKLNKKDD 1528
E + E K+ ++ K+ + D
Sbjct: 1636 ENQEEKPEKNSRIGEKMETEAD 1657
Score = 37.7 bits (86), Expect = 0.088
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 1490 KEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDD--------KGRDKGKGKKRP 1540
+EEE E +EEEEEE+EE E E + V+ + +++DD G D+G+ + P
Sbjct: 9 EEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGVLGRGPGHDRGRDRHSP 67
Score = 33.5 bits (75), Expect = 1.7
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 1488 IAKEEESEDESNEEEEEE-----DEEESESEAKSVKVKIKLNKKDDKGRDK 1533
+++EEE E+E +EEEEE DE++ E + + V + D+GRD+
Sbjct: 17 VSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGV---LGRGPGHDRGRDR 64
Score = 32.0 bits (71), Expect = 4.8
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 630 APRSDSEESDSDY----EEEDEEEESSRQETEEKILLDPNSEE 668
+P D EE + + EEE+EEEE +E EE D + EE
Sbjct: 3 SPLRDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEE 45
Score = 32.0 bits (71), Expect = 4.8
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 1490 KEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAK 1546
++EE E+E EEE+EEE E + + + ++ D++ D+G + P + +
Sbjct: 6 RDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGVLGRGPGHDRGR 62
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 392 bits (1008), Expect = e-108
Identities = 304/975 (31%), Positives = 462/975 (47%), Gaps = 158/975 (16%)
Query: 722 GTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVP 781
GTL YQ++GL W+ + + ILADEMGLGKT+QT + L + GP+L+ P
Sbjct: 724 GTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAP 783
Query: 782 LSTLSNWTYEFDKWAPSVVKISYKGTPAMRR--------------------SLVPQLRSG 821
LST+ NW EF+ WAP + ++Y G R S + + S
Sbjct: 784 LSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASV 843
Query: 822 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTG 881
KF+VLLT+YE I D IL I W +IVDE HR+KN+ K +VLN Y ++LLTG
Sbjct: 844 KFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNG-YSLQHKLLLTG 902
Query: 882 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 941
TPLQN L EL+ LLNFL P F + F + F D+ +E+ I ++LH +
Sbjct: 903 TPLQNNLEELFHLLNFLTPERFHNLEGFLEEF----------ADIAKEDQI---KKLHDM 949
Query: 942 LRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGG 1001
L P +LRRLK +V +P K E +++ ++S +QK Y++ IL + + +G G
Sbjct: 950 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKY-----ILTRNFEALNARGGGN 1004
Query: 1002 AKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPK 1061
+L+N +M L+K CNHPY+F + E NG+ +G+ L RASGK LL ++L
Sbjct: 1005 QVSLLNVVMDLKKCCNHPYLFP---VAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKN 1061
Query: 1062 LRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFI 1121
L+ HRVL+F QMT ++ ++ED+ + Y R+DG R + +FN PG+Q F
Sbjct: 1062 LKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFC 1121
Query: 1122 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1181
FLLSTRAGGLG+NL ADTV+I+DSDWNPH D+QA RAHRIGQ +V + R T SVE
Sbjct: 1122 FLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1181
Query: 1182 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP------- 1234
E+I AK K+ + V++ G+ + S ++ L IL+ E +DE
Sbjct: 1182 ERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQE--LDDILKFGTEELFKDEATDGGGDNK 1239
Query: 1235 ----------DDETLNQMIARREEEFDLFMRMDMDRRRED---ARNPKRKPRLMEEDELP 1281
DD+ + +++ R ++E + M+ A+ R+ + EE+E+
Sbjct: 1240 EGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVE 1299
Query: 1282 SWIIKDDAEVE--------RLTCEEEEEKI---FGRGSRQRRDVDYSDALTE-KQWLR-- 1327
IIK + V+ R E+++E + G+G R R+ V+Y+D E + W
Sbjct: 1300 REIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQEDRDWQDDQ 1359
Query: 1328 ---------AIEDG--NLEEMEEEVRLKKRKRRRNVDKDP-------------------- 1356
A E+G + +E E R RK RN DKD
Sbjct: 1360 SDNQSDYSVASEEGDEDFDERSEAPRRPSRKGLRN-DKDKPLPPLLARVGGNIEVLGFNA 1418
Query: 1357 -AKEDVEKAKKRRGRPPAEKLSPN------PPKLTKQMNAIIDTVINYKDSSGRQLSEVF 1409
++ A R G PP + + K K+ A + + + G +E F
Sbjct: 1419 RQRKAFLNAIMRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYVSLFMRHLCEPGADGAETF 1478
Query: 1410 IQLPSRKELPEYY--------ELIRKPV-DFKKIKER--------IRNHKYRSL------ 1446
R+ L + LIRK V +F+ + R + +K S
Sbjct: 1479 ADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPELAEVEENKKMSQPGSPSP 1538
Query: 1447 --------GDLEKDVMLLCHNAQT-FNLEGSQI-YEDSIVLQSVFKSARQKIAKEEESED 1496
GD + + A+ +E + + E+SI + KS + A E
Sbjct: 1539 KTPTPSTPGDTQPNTPAPVPPAEDGIKIEENSLKEEESIEGEKEVKSTAPETAIECTQAP 1598
Query: 1497 ESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAK------PVVS 1550
E+E+ E E E K K ++K + ++ + KG + + K P+V
Sbjct: 1599 APASEDEKVVVEPPEGEEKVEKAEVK-ERTEEPMETEPKGAADVEKVEEKSAIDLTPIVV 1657
Query: 1551 DFDSDEEQDEREQSE 1565
+ D +E+++E E+ E
Sbjct: 1658 E-DKEEKKEEEEKKE 1671
Score = 38.5 bits (88), Expect = 0.052
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 1432 KKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDS--IVLQSVF-------- 1481
KK ++ R+ K +K+ MLLC + EG + E+ + L+S
Sbjct: 54 KKKPKKPRDPKIPKSKRQKKERMLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPG 113
Query: 1482 KSARQKIA--KEEESEDESNEEEEEEDEEESESEAKS 1516
K ++K+ KE++S+ + EEEEEED+++ E KS
Sbjct: 114 KKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSKEPKS 150
Score = 34.3 bits (77), Expect = 0.97
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 1479 SVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKL-NKKDDKGRDKGKGK 1537
S FK A+ + +EE E+E E E + EE + + ++ +++D R+ GKGK
Sbjct: 1278 SSFKVAQYVVREEEMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGK 1337
Query: 1538 ---KRPNRGKAKPVVSDFDSDEEQDEREQSEGSGTDDE 1572
K+ N D+ D+ ++ + S S DE
Sbjct: 1338 RIRKQVNYNDGSQEDRDWQDDQSDNQSDYSVASEEGDE 1375
Score = 31.2 bits (69), Expect = 8.3
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 4/123 (3%)
Query: 228 QQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRP 287
++ ++ Q P + P P T QP P+ G ++ S ++ +
Sbjct: 1525 EENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGIKIEENSLKEEESIEGEKEVK 1584
Query: 288 SPAPPAA---AQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQ-KPQGLDPVEIL 343
S AP A Q PA A V P V + + K+ P++ +P+G VE +
Sbjct: 1585 STAPETAIECTQAPAPASEDEKVVVEPPEGEEKVEKAEVKERTEEPMETEPKGAADVEKV 1644
Query: 344 QER 346
+E+
Sbjct: 1645 EEK 1647
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 392 bits (1007), Expect = e-108
Identities = 265/695 (38%), Positives = 359/695 (51%), Gaps = 78/695 (11%)
Query: 724 LKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLS 783
L+ YQL GL W+ + + ILADEMGLGKTIQTI+ + YL +L GP+L++VPLS
Sbjct: 481 LRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLS 540
Query: 784 TLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVP------QLRSGKFNVLLTTYEYIIKDK 837
TL++W E WA + + Y G R + Q + KFN+LLTTYE ++KDK
Sbjct: 541 TLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILLTTYEILLKDK 600
Query: 838 HILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNF 897
L + W ++ VDE HR+KN L + L + + R+L+TGTPLQN L ELW+LL+F
Sbjct: 601 AFLGGLNWAFIGVDEAHRLKNDDSLLYKTL-IDFKSNHRLLITGTPLQNSLKELWSLLHF 659
Query: 898 LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 957
++P F S FE+ G LHK L PFLLRR+KK+VE
Sbjct: 660 IMPEKFSSWEDFEEEHGK-----GREYGYAS---------LHKELEPFLLRRVKKDVEKS 705
Query: 958 LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICN 1017
LP KVE +++ +MSALQK Y K IL + K KG +N +M+L+K CN
Sbjct: 706 LPAKVEQILRMEMSALQKQYY-----KWILTRNYKALSKGSKGSTSGFLNIMMELKKCCN 760
Query: 1018 HPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTS 1077
H Y+ + + + + N L R+SGK LLD++L +LR +RVL+F QM
Sbjct: 761 HCYLIKPPDNN-----EFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVR 815
Query: 1078 LMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA 1137
++ I+ +Y +R F + RLDG+ K E R L FN GS+ F FLLSTRAGGLG+NL +
Sbjct: 816 MLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLAS 875
Query: 1138 ADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQK 1197
ADTVVIFDSDWNP DLQAQ RAHRIGQ+ +V + RL T SVEE IL AK K+ +D
Sbjct: 876 ADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHL 935
Query: 1198 VIQAGMFDQK----------SSSHERRAFLQAIL---------EHEEENEEEDEVPDDET 1238
VIQ K SS+ + L AIL E E E +E E+ DE
Sbjct: 936 VIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEI 995
Query: 1239 LNQMIARREEEFDL--------------FMRMDMDR-RREDARNPKRKPRLMEEDELPSW 1283
L + E L F MD D E RN K ++ ED+
Sbjct: 996 LKRAETHENEPGPLTVGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPEDQ---- 1051
Query: 1284 IIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRL 1343
+ E E E EE + R + + ++ + + R + + + E R
Sbjct: 1052 --RRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISEGKRP 1109
Query: 1344 KKRKRRRNVDKDPAK--EDVE-----KAKKRRGRP 1371
KKR R R + ++ K D E K+ K+ G P
Sbjct: 1110 KKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGP 1144
Score = 38.5 bits (88), Expect = 0.052
Identities = 33/168 (19%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 549 QAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFG 608
Q A +K+++++++++ + ++ G E D+SS S++ K H + + G
Sbjct: 97 QRSAILKKQQQQQQQQQHQASSNSGSEEDSSSSEDSDDSS--SEVKRK-KHKDEDWQMSG 153
Query: 609 PEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEE 668
+P S D+ E E +S +E++SDYE +++ + Q + N ++
Sbjct: 154 SGSPSQSGSDSESE-----EEREKSSCDETESDYEPKNKVKSRKPQNRSKS----KNGKK 204
Query: 669 VSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQS 716
+ + +QI + + D +++Y + Q+ V++ E ++ S
Sbjct: 205 ILGQKKRQIDSSEEDDDEEDYDNDKRSSRRQATVNVSYKEDEEMKTDS 252
Score = 35.0 bits (79), Expect = 0.57
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 19/114 (16%)
Query: 1465 LEGSQIYEDSIVLQSVFKSA------RQKIAKEEESEDESNEEEEEEDEEESESEAKSVK 1518
++G++ ++ S + +V +SA +Q+ ++ ++ S EE+ E+S+ + VK
Sbjct: 81 VDGAEFWKSSPSILAVQRSAILKKQQQQQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVK 140
Query: 1519 VKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDEREQSEGSGTDDE 1572
R K K + G P S DS E ++ERE+S T+ +
Sbjct: 141 ------------RKKHKDEDWQMSGSGSPSQSGSDS-ESEEEREKSSCDETESD 181
Score = 34.3 bits (77), Expect = 0.97
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 1492 EESEDESNEEEEEE---DEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPV 1548
+ D +EEE E+ DE ES+ E K+ K+K K ++ + K GKK + K +
Sbjct: 159 QSGSDSESEEEREKSSCDETESDYEPKN---KVKSRKPQNRSKSK-NGKKILGQKKRQID 214
Query: 1549 VSDFDSDEEQDEREQ 1563
S+ D DEE + ++
Sbjct: 215 SSEEDDDEEDYDNDK 229
Score = 33.9 bits (76), Expect = 1.3
Identities = 26/134 (19%), Positives = 58/134 (43%), Gaps = 5/134 (3%)
Query: 552 AAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEA 611
++ E K+++ + + + + G S G D E +E + S + + KV
Sbjct: 135 SSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDETESDYEPKNKVKSRKPQ 194
Query: 612 PKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSE 671
++ + + + + DS E D D E+ D ++ SSR++ + + +E +
Sbjct: 195 NRSKSKNGKKILG---QKKRQIDSSEEDDDEEDYDNDKRSSRRQA--TVNVSYKEDEEMK 249
Query: 672 KDAKQIIETAKQDV 685
D+ ++E +DV
Sbjct: 250 TDSDDLLEVCGEDV 263
Score = 32.7 bits (73), Expect = 2.8
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 1466 EGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNK 1525
E S EDS S K + K +E S + +SESE + K +
Sbjct: 124 EDSSSSEDSDDSSSEVKRKKHK----DEDWQMSGSGSPSQSGSDSESEEEREKSSCDETE 179
Query: 1526 KDDKGRDKGKGKKRPNRGKAK-------PVVSDFDSDEEQDERE 1562
D + ++K K +K NR K+K DS EE D+ E
Sbjct: 180 SDYEPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDSSEEDDDEE 223
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 390 bits (1003), Expect = e-108
Identities = 359/1269 (28%), Positives = 559/1269 (44%), Gaps = 228/1269 (17%)
Query: 70 MHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLG 129
MHQ G ++ + +H +GT PP P SPM S +P G
Sbjct: 362 MHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPP------PMSPMKAMS--------NPAG 407
Query: 130 APEHVSSPMSGGGPTP----PQMPPSQPGALIPGDPQAMSQPNRGPS------PFSPVQL 179
P P S G P P MP QP PG + Q N GP PF +
Sbjct: 408 TPPPQVRPGSAGIPMEVGSYPNMPHPQPSHQPPG-AMGIGQRNMGPRNMQQSRPFIGMSS 466
Query: 180 --HQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQ 237
+L + G P+ +Q +R +PG QQ QQ QQ Q
Sbjct: 467 APRELTGHMRPNGCPGVGLGDPQAIQ-----ERLIPG--QQHPGQQPSFQQLPTCPPLQP 519
Query: 238 QP----QQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPA 293
P Q PP P Q Q P P+ +TPQK+PV + SP+ P
Sbjct: 520 HPGLHHQSSPPHPHHQPWAQ---------LHPSPQ----NTPQKVPVH----QHSPSEPF 562
Query: 294 AAQP--PAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQK----------------PQ 335
+P V GP+ P ++ Q +Q + P
Sbjct: 563 LEKPVPDMTQVSGPNAQLVKSDDYLPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPG 622
Query: 336 GLDPVEI----LQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQ 391
G+D E+ L + + + + ++ P K KA ++ ++
Sbjct: 623 GVDNQELNRNSLDGSQEEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKE 682
Query: 392 LRQEVVA----CMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQK---------- 437
+ + ++ + + + A K+ + E L+K
Sbjct: 683 KKAKTATPKPKSSKKSSNKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDED 742
Query: 438 --IEQERKRRQ-KHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKE 494
+++ R RQ K + Y + D + AG+ +NT + +++E
Sbjct: 743 PGVQKRRSSRQVKRKRYTEDLEFKISDEEADDADAAGRDSP---------SNTSQSEQQE 793
Query: 495 TERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAK 554
+ E + ++M+ R + QK+ + +E+ N + H Q + +
Sbjct: 794 SVDAEGPVVEKIMSS-----RSVKKQKESGEEV----EIEEFYVKYKNFSYLHCQWASIE 844
Query: 555 --EKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEA- 611
EK KR ++K K + +G L S++ D + E +++ +
Sbjct: 845 DLEKDKRIQQKIKRFKAKQGQNKFL----------SEIEDELFNPDYVEVDRIMDFARST 894
Query: 612 -----PKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNS 666
P L W + YE DS +E + +++ +E E+ + +P +
Sbjct: 895 DDRGEPVTHYLVKWCSLP--YE----------DSTWERRQDIDQAKIEEFEKLMSREPET 942
Query: 667 EEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKH 726
E V A D++ S+R ++ N L+
Sbjct: 943 ERVERPPA------------DDWKKSESSREYKN--------------------NNKLRE 970
Query: 727 YQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLS 786
YQL+G+ W++ + N N ILADEMGLGKTIQ+I + Y + K ++GP+L+I PLST+
Sbjct: 971 YQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLSTIP 1029
Query: 787 NWTYEFDKWAPSVVKISYKGTPAMRRSLV--------PQLR----SGKFNVLLTTYEYII 834
NW EF W V + Y G+ A RR++ PQ R S KF+ ++TT+E I+
Sbjct: 1030 NWEREFRTWTELNVVV-YHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMIL 1088
Query: 835 KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL 894
D L I W+ +++DE HR+KN +CKL + L + ++LLTGTPLQN + EL++L
Sbjct: 1089 TDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLE-HKVLLTGTPLQNTVEELFSL 1147
Query: 895 LNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV 954
L+FL P+ F S +TF Q F DL EE + ++L +L+P +LRRLK++V
Sbjct: 1148 LHFLEPSRFPSETTFMQEFG----------DLKTEEQV---QKLQAILKPMMLRRLKEDV 1194
Query: 955 ESQLPEKVEYVIKCDMSALQKILYRHMQAKGI-LLTDGSEKDKKGKGGAKTLMNTIMQLR 1013
E L K E +I+ +++ +QK YR + K L+ G G+ L+NT+M+LR
Sbjct: 1195 EKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGG-----GQANVPNLLNTMMELR 1249
Query: 1014 KICNHPYMFQHIEESFAEHLGYSNGVING----AELYRASGKFELLDRILPKLRATNHRV 1069
K CNHPY+ EE E ++ + + +A+GK L+D++LPKL+A HRV
Sbjct: 1250 KCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRV 1309
Query: 1070 LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAG 1129
L+F QM + I+EDY R + Y R+DG + R A + +F++P S F+FLL TRAG
Sbjct: 1310 LIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAG 1369
Query: 1130 GLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK 1189
GLG+NL AADT +IFDSDWNP DLQAQ R HRIGQ V++ RL T NS E ++ A
Sbjct: 1370 GLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKAS 1429
Query: 1190 YKLNVDQKVIQ-------AGMFDQKSSSHE-----RRAFLQAILEHEEENEEEDEVPDDE 1237
KL +D+ V+Q A Q+ S E R+ A+++ E+E + E E
Sbjct: 1430 LKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCE----E 1485
Query: 1238 TLNQMIARR 1246
++Q++ RR
Sbjct: 1486 DIDQILLRR 1494
Score = 59.3 bits (142), Expect = 3e-08
Identities = 54/274 (19%), Positives = 105/274 (38%), Gaps = 28/274 (10%)
Query: 1 MSTPTDPGAMPHPGPSPGPGPSPGPILG----PSPGPGPSPGSVHSMMGPSPGPPSVSHP 56
M ++P P P PG P + P P P P + + GP ++
Sbjct: 399 MKAMSNPAGTPPPQVRPGSAGIPMEVGSYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQS 458
Query: 57 MPTMGSTDFPQEGMHQMHK---PIDGIHDKGIVEDIHCGSMKGTGMRP------------ 101
P +G + P+E M P G+ D +++ + G +P
Sbjct: 459 RPFIGMSSAPRELTGHMRPNGCPGVGLGDPQAIQERLIPGQQHPGQQPSFQQLPTCPPLQ 518
Query: 102 PHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDP 161
PHPG+ SP H Q + HPSP P+ V P+ P+ P + P P
Sbjct: 519 PHPGLHHQSSPPHPHHQPWAQLHPSPQNTPQKV--PVHQHSPSEPFLEKPVPDMTQVSGP 576
Query: 162 QAMSQPNRGPSPFSPVQLHQLRAQILAYKMLARG-------QPLPETLQLAVQGKRTLPG 214
A + P Q Q + + ++A P + + +L G
Sbjct: 577 NAQLVKSDDYLPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDG 636
Query: 215 LQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQT 248
Q++++++++ + ++ ++ ++ + +++P +P+T
Sbjct: 637 SQEEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKT 670
Score = 38.5 bits (88), Expect = 0.052
Identities = 58/271 (21%), Positives = 92/271 (33%), Gaps = 50/271 (18%)
Query: 51 PSVSHPMPTMGST---------DFPQEGMHQMHKPI--------DGI-------HDKGIV 86
PS+ HP T + Q+ MH M +P +G+ H +
Sbjct: 52 PSLHHPSTNQNQTKLTHFDHYNQYEQQKMHLMDQPNRMMSNTPGNGLASPHSQYHTPPVP 111
Query: 87 EDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPH----PSPLGAPEHVSSPMSGGG 142
+ H GS G G +PGM ++H Q ++ P + P+ + +P
Sbjct: 112 QVPHGGS--GGGQMGVYPGM-----QNERHGQSFVDSSSMWGPRAVQVPDQIRAPYQQQQ 164
Query: 143 PTPPQMPPSQPGALIPGDPQAMSQPN--RGPSPFSPVQLHQLRAQILAYKM----LARGQ 196
P P P+ G G PQ M Q FS Q Q + ++ + L +G
Sbjct: 165 PQPQPPQPAPSGPPAQGHPQHMQQMGSYMARGDFSMQQHGQPQQRMSQFSQGQEGLNQGN 224
Query: 197 PLPET------LQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQ 250
P T + Q P L+ QQ + P+ P PQ Q
Sbjct: 225 PFIATSGPGHLSHVPQQSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQ-QG 283
Query: 251 QQQPALVNYNRPSG--PGPELSGPSTPQKLP 279
+P +N++ S P P ++ + P
Sbjct: 284 AVRPQTLNFSSRSQTVPSPTINNSGQYSRYP 314
Score = 37.4 bits (85), Expect = 0.12
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 23/118 (19%)
Query: 519 DQKKDRRLAYLLQQTDEYVANLTNLVWEHKQA-----QAAKEKKKRRRRKKKAEENAEGG 573
D K++ L L+ Y ++ + V ++ Q K+K+ R R K + N G
Sbjct: 2584 DAPKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPNKLDINTLTG 2643
Query: 574 ESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAP 631
E V V + GK + G AP L WLE NP + VAP
Sbjct: 2644 EER------------------VPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAP 2683
Score = 34.7 bits (78), Expect = 0.75
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 15/92 (16%)
Query: 1298 EEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPA 1357
E+ K FG+ D+ + ++ R DG+ EE KK+K+R KDP
Sbjct: 609 EDPSKGFGKD-------DFPGGVDNQELNRNSLDGSQEE-------KKKKKRSKAKKDP- 653
Query: 1358 KEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNA 1389
KE E +K+ + P +P PK K+ A
Sbjct: 654 KEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKA 685
Score = 34.3 bits (77), Expect = 0.97
Identities = 84/413 (20%), Positives = 144/413 (34%), Gaps = 85/413 (20%)
Query: 1208 SSSHERRAFLQAILEHEEENEEEDEV--PDDETLNQMIAR---------REEEFDLFMRM 1256
S E + A +H E N E ++ P+ TL + R + ++ M
Sbjct: 1876 SEDKEESMEIHATGKHSESNAELGQLYWPNTSTLTTRLRRLITAYQRSYKRQQMRQEALM 1935
Query: 1257 DMDRRREDARNPKRKPRLME-------EDELPSWIIKDDAEVERLTCEEEEEKIFGRGSR 1309
DRRR R P+ + R +E ++ W +++A+ R+ FG
Sbjct: 1936 KTDRRR---RRPREEVRALEAEREAIISEKRQKWTRREEADFYRVV------STFG---- 1982
Query: 1310 QRRDVDYSDALTEKQWLRAIEDGNLEEMEEE---------VRLKKRKRRRNVDKDPAKED 1360
V + + W + L++ +E V + +R R V D D
Sbjct: 1983 ----VIFDPVKQQFDWNQFRAFARLDKKSDESLEKYFSCFVAMCRRVCRMPVKPDDEPPD 2038
Query: 1361 VEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPE 1420
+ + P E+ + + + I + V+++ QL E +LPE
Sbjct: 2039 LSSIIE----PITEERASRTLYRIELLRKIREQVLHHP-----QLGERLKLCQPSLDLPE 2089
Query: 1421 YYELIRKPVDFK--KIKERIRNHKYRSLGDLEKDVMLLCHN------------------- 1459
++E R D K + Y L D E + N
Sbjct: 2090 WWECGRHDRDLLVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNTSSLNPLAVG 2149
Query: 1460 -AQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEED------EEESES 1512
QT + S +D VL+ + + + E EEEEE D ++E E+
Sbjct: 2150 FVQTPPVISSAHIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQECEA 2209
Query: 1513 EAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDEREQSE 1565
EA SVK ++ K + G D G K +G + + D++ +E Q E
Sbjct: 2210 EASSVKNEL---KGVEVGADTG-SKSISEKGSEEDEEEKLEDDDKSEESSQPE 2258
Score = 33.9 bits (76), Expect = 1.3
Identities = 49/232 (21%), Positives = 85/232 (36%), Gaps = 35/232 (15%)
Query: 418 SKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLS 477
SK L + ++ +++KIE E +R K + + + Q ++ + + K+ LS
Sbjct: 2387 SKEDALNLSVPRQRRRRRRKIEIEAERAAKRRNLMEMVAQ-LRESQVVSENGQEKVVDLS 2445
Query: 478 KAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYV 537
KA RE T + ++ + + A L + ++
Sbjct: 2446 KA--------SREATSSTSNFSSLSSKFILPNVSTPVSDAFKTQMELLQAGLSRTPTRHL 2497
Query: 538 ANLTNLVWEHKQAQAAKEKKKRRRRK------------KKAEENAEGGESALG------- 578
N + + E K++R RRK K+ +AE E
Sbjct: 2498 LNGSLVDGEPPM------KRRRGRRKNVEGLDLLFMSHKRTSLSAEDAEVTKAFEEDIET 2551
Query: 579 PDGEPIDESSQMS-DLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEV 629
P I Q+ D + V + E G L G +APK L WL+++P Y V
Sbjct: 2552 PPTRNIPSPGQLDPDTRIPVINLEDGTRLVGEDAPKNKDLVEWLKLHPTYTV 2603
Score = 32.0 bits (71), Expect = 4.8
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 1333 NLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIID 1392
+L+ +EE + KKR + + K+P KE EK + + + P P PK K A
Sbjct: 633 SLDGSQEEKKKKKRSKAKKDPKEP-KEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPK 691
Query: 1393 TVINYKDSSGRQLSE 1407
+ K S+ + SE
Sbjct: 692 PKSSKKSSNKKPDSE 706
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 387 bits (993), Expect = e-107
Identities = 256/705 (36%), Positives = 373/705 (52%), Gaps = 72/705 (10%)
Query: 722 GTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVP 781
GTL YQL+GL W+ + + ILADEMGLGKT+QTI + L + GPYL+ P
Sbjct: 698 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 757
Query: 782 LSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ--------LRSGK----------- 822
LST+ NW EF+ WAP ++Y G R + +RSGK
Sbjct: 758 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 817
Query: 823 -FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTG 881
F+VLLT+YE I D+ IL I W ++VDE HR+KN+ K +VLN+ Y ++LLTG
Sbjct: 818 KFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNS-YKIDYKLLLTG 876
Query: 882 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 941
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 877 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 923
Query: 942 LRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGG 1001
L P +LRRLK +V +P K E +++ ++S +QK Y K IL + + KG G
Sbjct: 924 LGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYY-----KFILTRNFEALNSKGGGN 978
Query: 1002 AKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPK 1061
+L+N +M L+K CNHPY+F + E NG +G+ L ++SGK LL ++L K
Sbjct: 979 QVSLLNIMMDLKKCCNHPYLFP---VAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKK 1035
Query: 1062 LRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFI 1121
LR HRVL+F QMT ++ ++ED+ + + Y R+DG R + +FN PG+Q F
Sbjct: 1036 LRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFC 1095
Query: 1122 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1181
FLLSTRAGGLG+NL ADTV+I+DSDWNPH D+QA RAHRIGQ +V + R T SVE
Sbjct: 1096 FLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1155
Query: 1182 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQ 1241
E+I AK K+ + V++ G+ + S ++ L IL+ E +D+V
Sbjct: 1156 ERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE--LDDILKFGTEELFKDDV------EG 1207
Query: 1242 MIARREEEFDLFMRMDMDRRREDARNPKRK-----PRLMEEDELPSWIIKDDAEVERLTC 1296
M+++ + + + A + K+K P ++ E S I DDA + +L
Sbjct: 1208 MMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDAAISKLLD 1267
Query: 1297 EEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDP 1356
++ + + +Y + Q++ EDG +EE+E E+ K+ NVD D
Sbjct: 1268 RNQDAT---DDTELQNMNEYLSSFKVAQYVVREEDG-VEEVEREI----IKQEENVDPD- 1318
Query: 1357 AKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSS 1401
EK + E L+ N K + I +NY D+S
Sbjct: 1319 ---YWEKLLRHHYEQQQEDLARNLGKGKR-----IRKQVNYNDAS 1355
Score = 37.0 bits (84), Expect = 0.15
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 1489 AKEEESEDESNEEEE---EEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKA 1545
A+E E+EDE +EEE+ E ++ E S+ K K K + +K KGK++ G
Sbjct: 16 AEEMENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKE---NKCKGKRKKKEGS- 71
Query: 1546 KPVVSDFDSDEEQDEREQSEGSGTD 1570
+D S+ E+D E+SE G+D
Sbjct: 72 ----NDELSENEEDLEEKSESEGSD 92
Score = 35.8 bits (81), Expect = 0.34
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 19/114 (16%)
Query: 549 QAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFG 608
+ AA KK +RRRKKK ++ +G E+ D + E Q + G+++
Sbjct: 314 ECSAALGKKSKRRRKKKRIDDGDGYET----DHQDYCEVCQ-----------QGGEIILC 358
Query: 609 PEAPKASQ---LDAWLEMNP-GYEVAPRSDSEESDSDYEEEDEEEESSRQETEE 658
P+A LD LE P G P + E + +++D+EEE E EE
Sbjct: 359 DTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEEEE 412
Score = 34.7 bits (78), Expect = 0.75
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 1487 KIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKK-DDKGRDKGKGKKRPNRGKA 1545
K K+E S DE +E EE+ EE+SESE K KK DK K K KK+
Sbjct: 64 KRKKKEGSNDELSENEEDL-EEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKK------ 116
Query: 1546 KPVVSDFDSDEEQD 1559
D D D+ D
Sbjct: 117 -----DEDEDDNDD 125
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 379 bits (974), Expect = e-105
Identities = 261/792 (32%), Positives = 398/792 (50%), Gaps = 117/792 (14%)
Query: 473 IQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQ 532
+++L AV T A E E++ E +E+ER +++ + + + + + RRL +LL++
Sbjct: 18 VEQLDTAVIT-PAMLEEEEQLEAAGLERER--KMLEKARMSWDRESTEIRYRRLQHLLEK 74
Query: 533 TDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSD 592
++ Y L + +Q Q ++KKK + +KK + G+++ ID S +
Sbjct: 75 SNIYSKFLLTKM---EQQQLEEQKKKEKLERKKESLKVKKGKNS-------IDASEEKP- 123
Query: 593 LPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESS 652
V + G+ + Y ++ EE S ++ +E E
Sbjct: 124 ----VMRKKRGRE------------------DESYNISEVMSKEEILSVAKKNKKENEDE 161
Query: 653 RQETEEKILLDPNSEEVSEKDAK-QIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISER 711
+ + D + S K ++ ET +Q+ + G +
Sbjct: 162 NSSSTNLCVEDLQKNKDSNSIIKDRLSETVRQNTKFFFDPVRKCNGQPVPF--------- 212
Query: 712 VEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 771
+Q G ++ YQ++G+EW+ L+ N +NGILADEMGLGKT+Q IA I LM +
Sbjct: 213 --QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIA-LMIQRG 269
Query: 772 LNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQL--RSGKFN---VL 826
+ GP+L+ PLSTL NW EF ++ P + + Y GT R+ LV + R G V+
Sbjct: 270 VPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQIHPVV 329
Query: 827 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQN 886
+T++E ++D++ L WKY+IVDEGHR+KN C+L + L + A ++LLTGTPLQN
Sbjct: 330 ITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELK-RFNADNKLLLTGTPLQN 388
Query: 887 KLPELWALLNFLLPTIFKSCSTFEQWFN-APFAMTGERVDLNEEETILIIRRLHKVLRPF 945
L ELW+LLNFLLP +F +FE WF+ + T E + E E ++ LH++L PF
Sbjct: 389 NLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQ-NVLHMLHQILTPF 447
Query: 946 LLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGS------EKDKKGK 999
LLRRLK +V ++P K E V+ +S Q+I Y + + I GS E G+
Sbjct: 448 LLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIELSPTGR 507
Query: 1000 GGAKT---------------LMNTIMQLR------------------------------- 1013
+T L I Q++
Sbjct: 508 PKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMMLL 567
Query: 1014 -KICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLF 1072
K CNHPY+ ++ + + EL SGKF +LDR+LP+L+ H+VLLF
Sbjct: 568 RKCCNHPYLIEYPIDPVTQEFKIDE------ELVTNSGKFLILDRMLPELKKRGHKVLLF 621
Query: 1073 CQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLG 1132
QMTS++ I+ DY R+F + RLDG+ +R + FN + FIFL+STRAGGLG
Sbjct: 622 SQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFN-TDPEVFIFLVSTRAGGLG 680
Query: 1133 LNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKL 1192
+NL AADTV+I+DSDWNP DLQAQDR HRIGQ V V RL T N++++KI+ A K
Sbjct: 681 INLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKR 740
Query: 1193 NVDQKVIQAGMF 1204
+++ +I F
Sbjct: 741 KLEKLIIHKNHF 752
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 375 bits (962), Expect = e-103
Identities = 326/1121 (29%), Positives = 514/1121 (45%), Gaps = 173/1121 (15%)
Query: 203 QLAVQGKRTLPGLQQQQQQQQQQQ----QQQQQQQQQQQQPQQQPPQPQTQQQQQPALVN 258
++ +QG + Q + Q Q + Q Q QQ QQ+ Q QPP Q Q QQ P+
Sbjct: 34 KIVLQGNQLAALTQAKNAQGQPAKVVTIQLQVQQPQQKIQIVPQPPSSQPQPQQPPSTQP 93
Query: 259 YNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAAAVPGPS------------ 306
S ++ GP +PG R S QP A + G S
Sbjct: 94 VTLSSVQQAQIMGPG-------QSPGQRLSVPVKVVLQPQAGSSQGASSGLSVVKVLSAS 146
Query: 307 ----VPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELE 362
+ PA P + +++R QK Q I+ E R +AR I +
Sbjct: 147 EVAALSSPASSAPHSGGKTGMEENRRLEHQKKQE-KANRIVAEAIARARARGEQNIPRVL 205
Query: 363 N---LPGSLPPDLRTKATVELKALRLLNFQRQLRQEVV-ACMRRDTTLETALNSKAYKRS 418
N LP P + K + A L ++ + + A + + + K+
Sbjct: 206 NEDELPSVRPEEEGEKKRRKKSAGERLKEEKPKKSKTSGASKTKGKSKLNTITPVVGKKR 265
Query: 419 KRQTLREARMTEKL-------EKQQKIEQERKRRQ-KHQEYLNSI-LQHAKDFKEYHRSV 469
KR T + E + +++ I++ R RQ K ++Y + ++ D +E V
Sbjct: 266 KRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDV 325
Query: 470 AGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRL--- 526
G I+ E Q+ + E + M+ + E ++D+ R+
Sbjct: 326 TGPIKPEP-------ILPEPVQEPDGETLPS--MQFFVENPSEEDAAIVDKVLSMRIVKK 376
Query: 527 ---AYLLQQTDEYVANLTNLVWEHKQ----AQAAKEKKKRRRRKKKAEENAEGGESALGP 579
+ + +E+ N + H + +Q K+K+ ++ K+ + A+
Sbjct: 377 ELPSGQYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQ-MRHFFHE 435
Query: 580 DGEPIDESSQMSDLPVKVTHT---ETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSE 636
D EP + D + +H+ + G+ P L W + YE
Sbjct: 436 DEEPFNPDYVEVDRILDESHSIDKDNGE-------PVIYYLVKWCSL--PYE-------- 478
Query: 637 ESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSAR 696
DS +E +++ +E +E + + E+ + Q K ++ EY + R
Sbjct: 479 --DSTWELKEDVDEGKIREFKR---IQSRHPELKRVNRPQASAWKKLELSHEYKNRNQLR 533
Query: 697 GSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKT 756
YQL+G+ W++ + N N ILADEMGLGKT
Sbjct: 534 -----------------------------EYQLEGVNWLLFNWYNRQNCILADEMGLGKT 564
Query: 757 IQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRR---- 812
IQ+IA + + + ++GP+L+I PLST++NW EF+ W + I Y G+ A R+
Sbjct: 565 IQSIAFLQEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQ 622
Query: 813 ----------SLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCK 862
L+P + KF+ L+TT+E I+ D L +I W+ +I+DE HR+KN +CK
Sbjct: 623 YEMYCKDSRGRLIP--GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCK 680
Query: 863 LTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE 922
L L H ++LLTGTPLQN + EL++LL+FL P+ F S S F + F
Sbjct: 681 LLDSLK-HMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFG-------- 731
Query: 923 RVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQ 982
DL EE +++L +L+P +LRRLK++VE L K E +I+ +++ +QK YR +
Sbjct: 732 --DLKTEEQ---VQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAIL 786
Query: 983 AKGI-LLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVI- 1040
K L+ G+ G L+NT+M+LRK CNHPY+ EE + +I
Sbjct: 787 EKNFSFLSKGA-----GHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIP 841
Query: 1041 ---NGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLD 1097
+ + R++GK L+D++LPKL+A H+VL+F QM + I+EDY R +LY R+D
Sbjct: 842 HDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERID 901
Query: 1098 GTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQ 1157
G + R A + +F++P S F+FLL TRAGGLG+NL AADT +IFDSDWNP DLQAQ
Sbjct: 902 GRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQ 961
Query: 1158 DRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA-----------GMFDQ 1206
R HRIGQ V+V RL T NS E ++ A KL +D+ V+Q+ F +
Sbjct: 962 ARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSK 1021
Query: 1207 KS-SSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARR 1246
K R+ AI+E ++E + E E ++Q++ RR
Sbjct: 1022 KEIEDLLRKGAYAAIMEEDDEGSKFCE----EDIDQILLRR 1058
Score = 36.6 bits (83), Expect = 0.20
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 557 KKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQ 616
KK+ RKK E E E P+ +D ++ + V + G +L G +AP+ ++
Sbjct: 2006 KKKGNRKKLVELEVECMEE---PNHLDVDLETR-----IPVINKVDGTLLVGEDAPRRAE 2057
Query: 617 LDAWLEMNPGYEVAPR 632
L+ WL+ +P + V PR
Sbjct: 2058 LEMWLQGHPEFAVDPR 2073
Score = 33.1 bits (74), Expect = 2.2
Identities = 55/280 (19%), Positives = 116/280 (41%), Gaps = 42/280 (15%)
Query: 1262 REDARNPKRKPRLMEEDELPSWIIKDDAEVER-------LTCEEEEEKIFGRGSRQRRDV 1314
R AR + PR++ EDELPS +++ E +R EE+ +K G+ + +
Sbjct: 192 RARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSAGERLKEEKPKKSKTSGASKTKGK 251
Query: 1315 DYSDALT-----EKQWLRAIEDGNLEEM-------EEEVRLKKRKRRRNVDKDPAKEDVE 1362
+ +T +++ + ++ ++E M +EE ++KR+ R V + ED++
Sbjct: 252 SKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLD 311
Query: 1363 -KAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEY 1421
K + P P+ I+ + D + F++ PS ++
Sbjct: 312 IKITDDEEEEEVDVTGPIKPE------PILPEPVQEPDGETLPSMQFFVENPSEEDA--- 362
Query: 1422 YELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEG---SQIYEDSIVLQ 1478
++ K + + +K+ + + +Y ++ + N + E SQ+ +D + Q
Sbjct: 363 -AIVDKVLSMRIVKKELPSGQYTE----AEEFFVKYKNYSYLHCEWATISQLEKDKRIHQ 417
Query: 1479 SVFKSARQKIAKE----EESEDESNEEEEEEDEEESESEA 1514
+ K + K+A+ E E+ N + E D ES +
Sbjct: 418 KL-KRFKTKMAQMRHFFHEDEEPFNPDYVEVDRILDESHS 456
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 364 bits (935), Expect = e-100
Identities = 279/878 (31%), Positives = 430/878 (48%), Gaps = 125/878 (14%)
Query: 401 RRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAK 460
+ +TT+E+ + ++ E+ TE + Q++ + +R+K+ E L+ +
Sbjct: 202 KSETTVESLELDQGLTNPSLRSPEES--TESTDSQKRRSGRQVKRRKYNEDLDFKVVD-D 258
Query: 461 DFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQ 520
D + AG+ LS + W A E + + IEK + + E G +
Sbjct: 259 DGETIAVLGAGRTSALSASTLAWQA--EEPPEDDANIIEKILASKTVQEVHPG-----EP 311
Query: 521 KKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEEN--AEGGESALG 578
D L Y+ + Y+ + E ++ +K KR R K+ ++ E E
Sbjct: 312 PFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFN 371
Query: 579 PDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEES 638
PD +D ++V HT+ + G E L W +
Sbjct: 372 PDYVEVDRI-------LEVAHTKDAET--GEEV--THYLVKWCSL--------------- 405
Query: 639 DSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGS 698
YEE S E EE + DP +V E ++ Q++ K S
Sbjct: 406 --PYEE-------STWELEEDV--DP--AKVKEFESLQVLPEIKH---------VERPAS 443
Query: 699 QSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQ 758
S+ +++EK + L+ YQL+G+ W++ + N N ILADEMGLGKTIQ
Sbjct: 444 DSW--------QKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQ 495
Query: 759 TIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLV--- 815
+I ++ + + ++GP+LII PLST++NW EF W + I Y G+ R+ +
Sbjct: 496 SITFLSEIFL-RGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYE 553
Query: 816 ---------PQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV 866
P KF+V++TT+E I+ D L KI W +I+DE HR+KN +CKL +
Sbjct: 554 MVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEG 613
Query: 867 LNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDL 926
L ++LLTGTPLQN + EL++LLNFL P+ F S + F + F DL
Sbjct: 614 LKL-MALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG----------DL 662
Query: 927 NEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGI 986
EE + ++L +L+P +LRRLK +VE L K E +I+ +++ +QK YR + K
Sbjct: 663 KTEEQV---KKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNF 719
Query: 987 -LLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGV----IN 1041
LT G+ + L+NT+M+LRK CNHPY+ EE E ++
Sbjct: 720 SFLTKGANQHNM-----PNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQ 774
Query: 1042 GAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTK 1101
+ +A+GK L+D++LPKL A H+VL+F QM + I+EDY R + Y R+DG +
Sbjct: 775 LQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVR 834
Query: 1102 SEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAH 1161
R A + +F +P S F+FLL TRAGGLG+NL AADT +IFDSDWNP DLQAQ R H
Sbjct: 835 GNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCH 894
Query: 1162 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE--------- 1212
RIGQ V+V RL T NS E ++ A KL +D+ V+Q ++K ++
Sbjct: 895 RIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQD--INRKGGTNGVQQLSKMEV 952
Query: 1213 ----RRAFLQAILEHEEENEEEDEVPDDETLNQMIARR 1246
R+ A+++ E+E + E E ++Q++ RR
Sbjct: 953 EDLLRKGAYGALMDEEDEGSKFCE----EDIDQILQRR 986
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 362 bits (930), Expect = 1e-99
Identities = 230/612 (37%), Positives = 343/612 (56%), Gaps = 64/612 (10%)
Query: 668 EVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHY 727
E S + K+ ++ AK +++ +Q S ++ I +++++ L+ Y
Sbjct: 806 EDSTWELKEDVDLAK--IEEFEQLQASRPDTRRLDRPPSNIWKKIDQSRDYKNGNQLREY 863
Query: 728 QLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSN 787
QL+GL W++ + N N ILADEMGLGKTIQ+I + Y + + GP+LII PLST++N
Sbjct: 864 QLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIAN 922
Query: 788 WTYEFDKWAPSVVKISYKGTPAMRRSLVPQLR-------------SGKFNVLLTTYEYII 834
W EF W V + Y G+ + R ++ Q + +F ++TT+E I+
Sbjct: 923 WEREFRTWTDINVVV-YHGS-LISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMIL 980
Query: 835 KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL 894
L I W+ +I+DE HR+KN +CKL + L + ++LLTGTPLQN + EL++L
Sbjct: 981 GGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLE-HKVLLTGTPLQNTVEELFSL 1039
Query: 895 LNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV 954
L+FL P F S STF Q F DL EE + ++L +L+P +LRRLK++V
Sbjct: 1040 LHFLEPLRFPSESTFMQEFG----------DLKTEEQV---QKLQAILKPMMLRRLKEDV 1086
Query: 955 ESQLPEKVEYVIKCDMSALQKILYRHMQAKGI-LLTDGSEKDKKGKGGAKTLMNTIMQLR 1013
E +L K E +I+ +++ +QK YR + K L+ G+ G+ L+NT+M+LR
Sbjct: 1087 EKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGA-----GQTNVPNLVNTMMELR 1141
Query: 1014 KICNHPYMFQHIEESFAEHLGYSNGVINGAE-------LYRASGKFELLDRILPKLRATN 1066
K CNHPY+ + EE LG N A + +++GK L+D++LPK++A
Sbjct: 1142 KCCNHPYLIKGAEEKI---LGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGG 1198
Query: 1067 HRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLST 1126
H+VL+F QM + I+EDY + +LY R+DG + R A + +F++P S F+FLL T
Sbjct: 1199 HKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCT 1258
Query: 1127 RAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILA 1186
RAGGLG+NL AADT +IFDSDWNP DLQAQ R HRIGQ V+V RL T NS E ++
Sbjct: 1259 RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFD 1318
Query: 1187 AAKYKLNVDQKVIQA--------GMFDQKSSSH----ERRAFLQAILEHEEENEEEDEVP 1234
A KL +D+ V+Q+ G Q S RR AI+E E+E + E
Sbjct: 1319 RASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCE-- 1376
Query: 1235 DDETLNQMIARR 1246
E ++Q++ RR
Sbjct: 1377 --EDIDQILLRR 1386
Score = 37.0 bits (84), Expect = 0.15
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 579 PDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGY 627
P G P ES PV V + + G L G +APK L+ WL+ +PGY
Sbjct: 2461 PQGIPDTES------PVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGY 2503
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 347 bits (891), Expect = 4e-95
Identities = 249/702 (35%), Positives = 363/702 (51%), Gaps = 64/702 (9%)
Query: 694 SARGSQS------YYTVAHAISERVEKQSAL---LINGTLKHYQLQGLEWMVSLYNNNLN 744
++RG Q+ +T A + RV++Q L L+ YQL+G+ W+ ++
Sbjct: 7 TSRGGQAPGFLLRLHTEGRAEAARVQEQDLRQWGLTGIHLRSYQLEGVNWLAQRFHCQNG 66
Query: 745 GILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISY 804
IL DEMGLGKT QTIAL YL GP+LI+ PLS LSNW E ++AP + ++Y
Sbjct: 67 CILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMQRFAPGLSCVTY 126
Query: 805 KGTPAMRRSLVPQLRS-GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKL 863
G R L L+ +F+VLLTTYE +KD L W ++VDE HR+KN L
Sbjct: 127 AGDKEERACLQQDLKQESRFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLL 186
Query: 864 TQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER 923
+ L+ V +LLTGTP+QN L EL++LL+F+ P +F + F +
Sbjct: 187 HKTLSEFSVV-FSLLLTGTPIQNSLQELYSLLSFVEPDLFSKEEVGD------FIQRYQD 239
Query: 924 VDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQA 983
++ E LHK+L+PFLLRR+K EV ++LP+K E VI MSALQK Y+ +
Sbjct: 240 IEKESESA----SELHKLLQPFLLRRVKAEVATELPKKTEVVIYHGMSALQKKYYKAILM 295
Query: 984 KGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGA 1043
K + + +E KK K L N + QLRK +HPY+F +E E G
Sbjct: 296 KDLDAFE-NETAKKVK-----LQNILSQLRKCVDHPYLFDGVEPEPFEV---------GD 340
Query: 1044 ELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1103
L ASGK LLD++L L + HRVLLF QMT ++ I++DY +R + Y R+DG+ + E
Sbjct: 341 HLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGE 400
Query: 1104 DRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRI 1163
+R +K F + F+FLLSTRAGG+G+NL AADTV+ DSD+NP DLQA RAHRI
Sbjct: 401 ERHLAIKNFGQ--QPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRI 458
Query: 1164 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQ--AIL 1221
GQ V+V+RL ++VEE + A KL + +I+ G F + A LQ IL
Sbjct: 459 GQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHFTLGAQKPAADADLQLSEIL 518
Query: 1222 EH------EEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLM 1275
+ E DE+ + L + + L R +E+ +N L
Sbjct: 519 KFGLDKLLASEGSTMDEIDLESILGETKDGQWVSDALPAAEGGSRDQEEGKN---HMYLF 575
Query: 1276 EEDELPSWIIKDD-------AEVERLTCEEEEEKIFGRGSRQRRDV---DYSDALTEKQW 1325
E + K+D +++ E+ ++ GR R + V + T+++
Sbjct: 576 EGKDYSKEPSKEDRKSFEQLVNLQKTLLEKASQE--GRSLRNKGSVLIPGLVEGSTKRK- 632
Query: 1326 LRAIEDGNLEEMEEEVRLKKRKRRRNV-DKDPAKEDVEKAKK 1366
R + LE+ +++ + KRRR + +K KE+ E KK
Sbjct: 633 -RVLSPEELEDRQKKRQEAAAKRRRLIEEKKRQKEEAEHKKK 673
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 303 bits (775), Expect = 1e-81
Identities = 266/939 (28%), Positives = 431/939 (45%), Gaps = 120/939 (12%)
Query: 338 DPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVV 397
+P E + + AR I ELE+L S DL+ LK L F ++ +++
Sbjct: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKEL----FPQRSDNDLL 178
Query: 398 ACMRRDTTLETALNSKAY---------KRSKRQTLREARMTEKLEKQQKIEQERKRRQKH 448
+ +T++ A+ + ++ K + E ++ Q I +K R H
Sbjct: 179 KLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDH 235
Query: 449 QEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMA 508
E N + + ++++ V KL K + RE KE E + E + L
Sbjct: 236 GEESNESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKV 291
Query: 509 EDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRK----- 563
E+ + + Q + + ++ Y N T + K + A+ ++R+K
Sbjct: 292 FAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNP 351
Query: 564 KKAEENAE---GGE--SALGPD---GEPIDESSQMSDLPVKVTHTETGKVLFGPEAP--K 613
K+ E++E G + S+L D GE + E + + G++ P+ K
Sbjct: 352 KRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKK 411
Query: 614 ASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKD 673
A ++ N + + S E+ ++ QE + I L E++S K
Sbjct: 412 AQKITELRPFNSWEALFTKMSKTNGLS--EDLIWHCKTLIQERDVVIRLMNKCEDISNKL 469
Query: 674 AKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 733
KQ+ +M G + +E+ S L + +LK YQ GL
Sbjct: 470 TKQV------------TMLTGNGGGWN-----------IEQPSILNQSLSLKPYQKVGLN 506
Query: 734 WMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFD 793
W+ ++ + LNGILADEMGLGKTIQ IA + YL + NGP+LI+VP ST+ NW E +
Sbjct: 507 WLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLREVN 565
Query: 794 KWAPSVVKISYKGTPAMRRSLVPQLRS--GKFNVLLTTYEYIIK---DKHILAKIRWKYM 848
W P++ + Y G+ R+ + + S +NV++TTY I D+ + +++ Y
Sbjct: 566 LWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYA 625
Query: 849 IVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF-KSCS 907
I DEGH +KN Q L T A R+LLTGTP+QN L EL +LLNF++P +F S S
Sbjct: 626 IFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTS 684
Query: 908 TFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIK 967
+ F++ E+ +E I ++++PF+LRR+K+EV QLP K + +
Sbjct: 685 EIRRMFSSKTKSADEQSIYEKER----IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIEL 740
Query: 968 CDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ---- 1023
C MS Q+ LY + + + EK+ + + N +MQLRK+ NHP + +
Sbjct: 741 CAMSEKQEQLYLGLFNRLKKSINNLEKNTE-------MCNVMMQLRKMANHPLLHRQYYT 793
Query: 1024 ----------------HIEES------------------FAEHLGYSNGVINGAELYRAS 1049
H E + + + N +L S
Sbjct: 794 AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 853
Query: 1050 GKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALL 1109
GKF +L IL +L+ RV+LF Q T ++ I+E YLRLDG T+ +R L+
Sbjct: 854 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 913
Query: 1110 KKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEV 1169
+FN F+FLLST+AGGLG+NL +A+ V++ D D NP+ D QA+DR HR+GQ EV
Sbjct: 914 DEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 972
Query: 1170 RVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1208
V++L + ++EE +L + KL ++Q + D+ S
Sbjct: 973 LVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1011
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 301 bits (772), Expect = 3e-81
Identities = 267/941 (28%), Positives = 433/941 (46%), Gaps = 122/941 (12%)
Query: 338 DPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVV 397
+P E + + AR I ELE+L S DL+ LK L F ++ +++
Sbjct: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKEL----FPQRSDNDLL 178
Query: 398 ACMRRDTTLETALNSKAY---------KRSKRQTLREARMTEKLEKQQKIEQERKRRQKH 448
+ +T++ A+ + ++ K + E ++ Q I +K R H
Sbjct: 179 KLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDH 235
Query: 449 QEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMA 508
E N + + ++++ V KL K + RE KE E + E + L
Sbjct: 236 GEESNESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKV 291
Query: 509 EDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRK----- 563
E+ + + Q + + ++ Y N T + K + A+ ++R+K
Sbjct: 292 FAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNP 351
Query: 564 KKAEENAE---GGE--SALGPD---GEPIDESSQMSDLPVKVTHTETGKVLFGPEAP--K 613
K+ E++E G + S+L D GE + E + + G++ P+ K
Sbjct: 352 KRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKK 411
Query: 614 ASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKD 673
A ++ N + + S E+ ++ QE + I L E++S K
Sbjct: 412 AQKITELRPFNSWEALFTKMSKTNGLS--EDLIWHCKTLIQERDVVIRLMNKCEDISNKL 469
Query: 674 AKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 733
KQ+ +M G + +E+ S L + +LK YQ GL
Sbjct: 470 TKQV------------TMLTGNGGGWN-----------IEQPSILNQSLSLKPYQKVGLN 506
Query: 734 WMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFD 793
W+ ++ + LNGILADEMGLGKTIQ IA + YL + NGP+LI+VP ST+ NW E +
Sbjct: 507 WLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLREVN 565
Query: 794 KWAPSVVKISYKGTPAMRRSLVPQLRS--GKFNVLLTTYEYIIK---DKHILAKIRWKYM 848
W P++ + Y G+ R+ + + S +NV++TTY I D+ + +++ Y
Sbjct: 566 LWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYA 625
Query: 849 IVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF-KSCS 907
I DEGH +KN Q L T A R+LLTGTP+QN L EL +LLNF++P +F S S
Sbjct: 626 IFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTS 684
Query: 908 TFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIK 967
+ F++ E+ +E I ++++PF+LRR+K+EV QLP K + +
Sbjct: 685 EIRRMFSSKTKSADEQSIYEKER----IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIEL 740
Query: 968 CDMSALQKILYRHM--QAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ-- 1023
C MS Q+ LY + + K + +EK+ + + N +MQLRK+ NHP + +
Sbjct: 741 CAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHRQY 793
Query: 1024 ------------------HIEES------------------FAEHLGYSNGVINGAELYR 1047
H E + + + N +L
Sbjct: 794 YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL 853
Query: 1048 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1107
SGKF +L IL +L+ RV+LF Q T ++ I+E YLRLDG T+ +R
Sbjct: 854 DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 913
Query: 1108 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQN 1167
L+ +FN F+FLLST+AGGLG+NL +A+ V++ D D NP+ D QA+DR HR+GQ
Sbjct: 914 LIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 972
Query: 1168 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1208
EV V++L + ++EE +L + KL ++Q + D+ S
Sbjct: 973 EVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 301 bits (772), Expect = 3e-81
Identities = 267/941 (28%), Positives = 433/941 (46%), Gaps = 122/941 (12%)
Query: 338 DPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVV 397
+P E + + AR I ELE+L S DL+ LK L F ++ +++
Sbjct: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKEL----FPQRSDNDLL 178
Query: 398 ACMRRDTTLETALNSKAY---------KRSKRQTLREARMTEKLEKQQKIEQERKRRQKH 448
+ +T++ A+ + ++ K + E ++ Q I +K R H
Sbjct: 179 KLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDH 235
Query: 449 QEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMA 508
E N + + ++++ V KL K + RE KE E + E + L
Sbjct: 236 GEESNESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKV 291
Query: 509 EDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRK----- 563
E+ + + Q + + ++ Y N T + K + A+ ++R+K
Sbjct: 292 FAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNP 351
Query: 564 KKAEENAE---GGE--SALGPD---GEPIDESSQMSDLPVKVTHTETGKVLFGPEAP--K 613
K+ E++E G + S+L D GE + E + + G++ P+ K
Sbjct: 352 KRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKK 411
Query: 614 ASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKD 673
A ++ N + + S E+ ++ QE + I L E++S K
Sbjct: 412 AQKITELRPFNSWEALFTKMSKTNGLS--EDLIWHCKTLIQERDVVIRLMNKCEDISNKL 469
Query: 674 AKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 733
KQ+ +M G + +E+ S L + +LK YQ GL
Sbjct: 470 TKQV------------TMLTGNGGGWN-----------IEQPSILNQSLSLKPYQKVGLN 506
Query: 734 WMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFD 793
W+ ++ + LNGILADEMGLGKTIQ IA + YL + NGP+LI+VP ST+ NW E +
Sbjct: 507 WLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLREVN 565
Query: 794 KWAPSVVKISYKGTPAMRRSLVPQLRS--GKFNVLLTTYEYIIK---DKHILAKIRWKYM 848
W P++ + Y G+ R+ + + S +NV++TTY I D+ + +++ Y
Sbjct: 566 LWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYA 625
Query: 849 IVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF-KSCS 907
I DEGH +KN Q L T A R+LLTGTP+QN L EL +LLNF++P +F S S
Sbjct: 626 IFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTS 684
Query: 908 TFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIK 967
+ F++ E+ +E I ++++PF+LRR+K+EV QLP K + +
Sbjct: 685 EIRRMFSSKTKSADEQSIYEKER----IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIEL 740
Query: 968 CDMSALQKILYRHM--QAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ-- 1023
C MS Q+ LY + + K + +EK+ + + N +MQLRK+ NHP + +
Sbjct: 741 CAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHRQY 793
Query: 1024 ------------------HIEES------------------FAEHLGYSNGVINGAELYR 1047
H E + + + N +L
Sbjct: 794 YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL 853
Query: 1048 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1107
SGKF +L IL +L+ RV+LF Q T ++ I+E YLRLDG T+ +R
Sbjct: 854 DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 913
Query: 1108 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQN 1167
L+ +FN F+FLLST+AGGLG+NL +A+ V++ D D NP+ D QA+DR HR+GQ
Sbjct: 914 LIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 972
Query: 1168 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1208
EV V++L + ++EE +L + KL ++Q + D+ S
Sbjct: 973 EVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 269 bits (688), Expect = 1e-71
Identities = 155/432 (35%), Positives = 242/432 (56%), Gaps = 47/432 (10%)
Query: 628 EVAPRSDSEESDSDYEE--EDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDV 685
E P+ DS E+ EDEE+E S +E SE +DA+ + +++
Sbjct: 486 EEPPQEDSSSQSDSVEDRSEDEEDEHSEEEETSGSSASEESESEESEDAQSQSQADEEEE 545
Query: 686 DDEYSMQY----------------------SARGSQSYYTVAHAISERVEKQS------- 716
DD++ ++Y + G + T A +E ++ +
Sbjct: 546 DDDFGVEYLLARDEEQSEADAGSGPPTPGPTTLGPKKEITDIAAAAESLQPKGYTLATTQ 605
Query: 717 -----ALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 771
LL+ G L+ YQ GL+W+V++Y LNGILADEMGLGKTIQTI+L+ +L K
Sbjct: 606 VKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKG 665
Query: 772 LNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRR-SLVPQLRSGKFNVLLTTY 830
GP+LIIVP S + NW E +W PS ++Y G R+ + F+V +T+Y
Sbjct: 666 NWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSY 725
Query: 831 EYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 890
+ +++D + W+Y+I+DE +KN + Q L ++ + RR+LLTGTPLQN L E
Sbjct: 726 KLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSL-LNFNSQRRLLLTGTPLQNSLME 784
Query: 891 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRL 950
LW+L++FL+P +F+S F++WF+ P +TG ++ ++E +++RLHKVLRPFLLRR+
Sbjct: 785 LWSLMHFLMPHVFQSHREFKEWFSNP--LTG-MIEGSQEYNEGLVKRLHKVLRPFLLRRV 841
Query: 951 KKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIM 1010
K +VE Q+P+K E+VI+C +S Q+ LY A+ + K+ G +++N +M
Sbjct: 842 KVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQ------TTTKETLATGHFMSVINILM 895
Query: 1011 QLRKICNHPYMF 1022
QLRK+CNHP +F
Sbjct: 896 QLRKVCNHPNLF 907
Score = 166 bits (419), Expect = 2e-40
Identities = 115/338 (34%), Positives = 176/338 (52%), Gaps = 32/338 (9%)
Query: 1050 GKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALL 1109
GK + L +L +L+A HRVL+F QMT ++ ++E + + LYLRLDG+T+ E R AL+
Sbjct: 2043 GKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALM 2102
Query: 1110 KKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEV 1169
++FN + F F+LSTR+GG+G+NL ADTVV +DSDWNP D QAQDR HRIGQ +V
Sbjct: 2103 ERFNAD-KRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 2161
Query: 1170 RVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER-RAFLQAILEHEEEN- 1227
+ RL + +VEE IL A K + I+ G F + R LE +
Sbjct: 2162 HIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMPLEEPSSSS 2221
Query: 1228 ------EEEDEVPDDET--LNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDE 1279
EEE+ V +T L Q + R E+E D+ R ++ L E +E
Sbjct: 2222 VPSAPEEEEETVASKQTHILEQALCRAEDEEDI--------RAATQAKAEQVAELAEFNE 2273
Query: 1280 LPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEE 1339
+ + E R E+EE SR +++ AL E+ L IE ++ +E
Sbjct: 2274 NDGFPAGEGEEAGRPGAEDEEM------SRAEQEI---AALVEQ--LTPIERYAMKFLEA 2322
Query: 1340 EVRLKKRKRRRNVDK--DPAKEDVEKAKKRRGRPPAEK 1375
+ R+ + ++ + A++D+++AK+ R P E+
Sbjct: 2323 SLEEVSREELKQAEEQVEAARKDLDQAKEEVFRLPQEE 2360
Score = 50.8 bits (120), Expect = 1e-05
Identities = 83/363 (22%), Positives = 123/363 (33%), Gaps = 46/363 (12%)
Query: 1 MSTPTDPGAMPHPG---PSPGPGPSPGPILGPSPGPGPSPGSVHS---MMGPSPGPP--- 51
++TP P A P PSP P +P P+L PSPG P S + +M PS P
Sbjct: 1583 LATPLAPMAAPQTAILAPSPAPPLAPLPVLAPSPGAAPVLASSQTPVPVMAPSSTPGTSL 1642
Query: 52 SVSHPMPTMGSTDFPQEGMHQMHKPIDG-IHDKGIVEDIHCGSMKGTGMRPPHP------ 104
+ + P+P P + P+ + + + + P
Sbjct: 1643 ASASPVPAPTPVLAPSSTQTMLPAPVPSPLPSPASTQTLALAPALAPTLGGSSPSQTLSL 1702
Query: 105 GMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAM 164
G G PQ P + ++P S + P S G P + P+Q +L P P A
Sbjct: 1703 GTGNPQGPFPTQTLS-LTPASSLVPTPAQTLSLAPG-----PPLGPTQTLSLAPAPPLAP 1756
Query: 165 SQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQ--- 221
+ SP P H L LA + P ++Q +P L Q
Sbjct: 1757 A------SPVGPAPAHTL---TLAPASSSASLLAPASVQTLTLSPAPVPTLGPAAAQTLA 1807
Query: 222 --QQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLP 279
Q Q P P T + P V+ + P SGP +P
Sbjct: 1808 LAPASTQSPASQASSLVVSASGAAPLPVTMVSRLP--VSKDEPDTLTLR-SGPPSPPSTA 1864
Query: 280 VPAPGGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSP----VLQLQQKQSRISPIQKPQ 335
G RP PP PP + S+ + Q S + QL + ++P+ +
Sbjct: 1865 TSFGGPRPRRQPP---PPPRSPFYLDSLEEKRKRQRSERLERIFQLSEAHGALAPVYGTE 1921
Query: 336 GLD 338
LD
Sbjct: 1922 VLD 1924
Score = 46.6 bits (109), Expect = 2e-04
Identities = 81/324 (25%), Positives = 106/324 (32%), Gaps = 44/324 (13%)
Query: 9 AMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGP-PSVSHPMPTMGSTDFPQ 67
A+ +P P+ PG P P LG + P P+P V ++ P P VS P P
Sbjct: 1340 AVLNPRPTLTPGRLPTPTLGTARAPMPTPTLVRPLLKLVHSPSPEVSASAPGAA----PL 1395
Query: 68 EGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRP-PHPGMGPPQSPMDQHSQGYMSPH-- 124
+H P S+ G P P P P SP+ +S
Sbjct: 1396 TISSPLHVP---------------SSLPGPASSPMPIPNSSPLASPVSSTVSVPLSSSLP 1440
Query: 125 -------PSPLGAP--EHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFS 175
P+P AP +S+P++ P + P L P P A P+ PS S
Sbjct: 1441 ISVPTTLPAPASAPLTIPISAPLTVSASGPALLTSVTP-PLAPVVPAAPGPPSLAPSGAS 1499
Query: 176 PVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQ 235
P L + L+ Q L LA +PGL
Sbjct: 1500 P-SASALTLGLATAPSLSSSQTPGHPLLLAPTSSH-VPGL-NSTVAPACSPVLVPASALA 1556
Query: 236 QQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAA 295
P P P PA S L+ P P P A PSPAPP A
Sbjct: 1557 SPFPSAPNPAPAQASLLAPA-------SSASQALATPLAPMAAPQTAILA-PSPAPPLAP 1608
Query: 296 QPPAAAVPGPSVPQPAPGQPSPVL 319
P A PG + + P PV+
Sbjct: 1609 LPVLAPSPGAAPVLASSQTPVPVM 1632
Score = 41.6 bits (96), Expect = 0.006
Identities = 78/314 (24%), Positives = 116/314 (36%), Gaps = 45/314 (14%)
Query: 14 GPSPGPGPSPGPILGPSPGPGPSPGSVHS--MMGPSP-GPPSVSHPMPTMGSTDFPQEGM 70
GP P P PGP L P PGP P + + M+ SP GPP + P P +
Sbjct: 1020 GPVP-VRPPPGPELSAQPTPGPVPQVLPASLMVSASPAGPPLIPASRP-------PGPVL 1071
Query: 71 HQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGA 130
+P G + + + G + GT RPP P + +P + +SP P P +
Sbjct: 1072 LPPLQPNSGSLPQVLPSPL--GVLSGTS-RPPTPTLSLKPTP---PAPVRLSPAPPPGSS 1125
Query: 131 PEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLHQLRAQILAYK 190
+ G PP + A+ P P+P + ++A++ + +
Sbjct: 1126 SLLKPLTVPPGYTFPPAAATTTSTTTATATTTAVPAPT--PAPQRLILSPDMQARLPSGE 1183
Query: 191 MLARGQ-------PL-----PETLQLAVQG-KRTLPGLQQQQQQQQQQQQQQQQQQQQQQ 237
+++ GQ P+ + L +QG K TL G Q +Q Q + Q+
Sbjct: 1184 VVSIGQLASLAQRPVANAGGSKPLTFQIQGNKLTLTGAQVRQLAVGQPRPLQRNVVHLVS 1243
Query: 238 QPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPA----PPA 293
Q QPA V + P P GP+ LP P P+P P A
Sbjct: 1244 AGGQH------HLISQPAHVALIQAVAPTP---GPTPVSVLPSSTPSTTPAPTGLSLPLA 1294
Query: 294 AAQPPAAAVPGPSV 307
A Q P V V
Sbjct: 1295 ANQVPPTMVNNTGV 1308
Score = 39.7 bits (91), Expect = 0.023
Identities = 77/351 (21%), Positives = 116/351 (33%), Gaps = 65/351 (18%)
Query: 7 PGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGS---------VHSMMGPSPGPPSVSHPM 57
P P P P+P P+ P L P P P P S VH + PSP PPS P
Sbjct: 2437 PRPAPRPRPTPASAPAAIPALVPVPVSAPVPISAPNPITILPVHIL--PSPPPPSQIPPC 2494
Query: 58 PTMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHP-GMGPPQSPMDQH 116
+ T P H P + + P P +GPP P+
Sbjct: 2495 SSPACTPPPACTPPPAHTP---------------PPAQTCLVTPSSPLLLGPPSVPISAS 2539
Query: 117 ---------------SQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQ---------MPPSQ 152
+Q SP L + SS S PP+ +P S+
Sbjct: 2540 VTNLPLGLRPEAELCAQALASPESLELASV--ASSETSSLSLVPPKDLLPVAVEILPVSE 2597
Query: 153 PG-ALIPGDPQAMSQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRT 211
+L P P + G P Q A+ +L G+ LP L ++
Sbjct: 2598 KNLSLTPSAPSLTLE--AGSIPNGQEQEAPDSAEGTTLTVLPEGEELP--LCVSESNGLE 2653
Query: 212 LP--GLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPEL 269
LP + Q+ + + ++ + + P P +PQ + A + + + PE
Sbjct: 2654 LPPSAASDEPLQEPLEADRTSEELTEAKTPTSSPEKPQELVTAEVAAPSTSSSATSSPEG 2713
Query: 270 SGPSTPQKLPVPAPGGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSPVLQ 320
P+ P + A QP PGP V + PG+ V++
Sbjct: 2714 PSPARPPRRRTSADVEIRGQGTGRPGQP-----PGPKVLRKLPGRLVTVVE 2759
Score = 39.7 bits (91), Expect = 0.023
Identities = 65/264 (24%), Positives = 87/264 (32%), Gaps = 40/264 (15%)
Query: 36 SPGS--VHSMMGPSPGPPSVSHPMPTMGSTDFP----QEGMHQMHKPIDGIHDKGIVEDI 89
SPGS V SM GP PP + P S+ P Q + + H + G+ G E+
Sbjct: 2787 SPGSPSVRSMSGPESSPP-IGGPCEAAPSSSLPTPPQQPFIARRHIEL-GVTGGGSPEN- 2843
Query: 90 HCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMP 149
G + PP + P S P + G E SS + G T P
Sbjct: 2844 --GDGALLAITPPAVKRRRGRPPKKNRS-----PADAGRGVDEAPSSTLKG--KTNGADP 2894
Query: 150 PSQPGALIPGDPQAMSQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGK 209
P LI DP Q GP P P +H+ + + RG+P P+ L + G
Sbjct: 2895 VPGPETLIVADPVLEPQLIPGPQPLGPQPVHRPNPLLSPVEKRRRGRP-PKARDLPIPGT 2953
Query: 210 RTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPEL 269
+ G + Q PP P P LV P+
Sbjct: 2954 ISSAG------------------DGNSESRTQPPPHPSPLTPLPPLLV---CPTATVANT 2992
Query: 270 SGPSTPQKLPVPAPGGRPSPAPPA 293
T P GRP PP+
Sbjct: 2993 VTTVTISTSPPKRKRGRPPKNPPS 3016
Score = 36.2 bits (82), Expect = 0.26
Identities = 49/173 (28%), Positives = 64/173 (36%), Gaps = 19/173 (10%)
Query: 207 QGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQP-PQPQTQQQQQPALVNYNRPSGP 265
QG P + Q + + +++ +P +P P P + PALV S P
Sbjct: 2407 QGANHTPVISAHQTRSTTTPPRCSPARERVPRPAPRPRPTPASAPAAIPALVPVP-VSAP 2465
Query: 266 GPELSGPSTPQKLPV------PAPGGRPSPAPPAAAQPPAAAVPGPSVPQPAPG---QPS 316
P +S P+ LPV P P P + PA PPA P P PA PS
Sbjct: 2466 VP-ISAPNPITILPVHILPSPPPPSQIPPCSSPACTPPPACTPPPAHTPPPAQTCLVTPS 2524
Query: 317 PVLQLQQKQSRISP--IQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGS 367
L L IS P GL P E E QA + EL ++ S
Sbjct: 2525 SPLLLGPPSVPISASVTNLPLGLRP-----EAELCAQALASPESLELASVASS 2572
Score = 35.8 bits (81), Expect = 0.34
Identities = 81/333 (24%), Positives = 107/333 (32%), Gaps = 43/333 (12%)
Query: 3 TPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSV-HSMMGPSPGPPSVSHP----M 57
+P+ + PG +P SP + PGP SP + +S SP +VS P +
Sbjct: 1380 SPSPEVSASAPGAAPLTISSPLHVPSSLPGPASSPMPIPNSSPLASPVSSTVSVPLSSSL 1439
Query: 58 PTMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHS 117
P T P + PI + G T + PP + P +
Sbjct: 1440 PISVPTTLPAPASAPLTIPI-----SAPLTVSASGPALLTSVTPPLAPVVPAAPGPPSLA 1494
Query: 118 QGYMSPHPSPL-----GAPEHVSSPMSGG----GPTPPQMP-------PSQPGALIPGDP 161
SP S L AP SS G PT +P P+ L+P
Sbjct: 1495 PSGASPSASALTLGLATAPSLSSSQTPGHPLLLAPTSSHVPGLNSTVAPACSPVLVPASA 1554
Query: 162 QAM---SQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQ 218
A S PN P+ S + +Q LA + P Q A+ P L
Sbjct: 1555 LASPFPSAPNPAPAQASLLAPASSASQALATPLAPMAAP-----QTAILAPSPAPPLAPL 1609
Query: 219 QQQQQQQQQQQQQQQQQQQQPQQQPPQ-PQTQQQQQPALVNYNRPSGPGPELSGPSTPQK 277
Q P P P T +L + + P P L+ ST
Sbjct: 1610 PVLAPSPGAAPVLASSQTPVPVMAPSSTPGT------SLASASPVPAPTPVLAPSSTQTM 1663
Query: 278 LPVPAPGGRPSPA--PPAAAQPPAAAVPGPSVP 308
LP P P PSPA A P A G S P
Sbjct: 1664 LPAPVPSPLPSPASTQTLALAPALAPTLGGSSP 1696
Score = 35.4 bits (80), Expect = 0.44
Identities = 81/387 (20%), Positives = 147/387 (37%), Gaps = 94/387 (24%)
Query: 310 PAPGQPS-PVLQLQQKQ------SRISPIQKPQ-------GLDPVEILQEREYRLQARIA 355
P+P P PVLQ Q + +SP G+ P I Q+
Sbjct: 5 PSPAHPQLPVLQTQMVSDGMTGSNPVSPASSSSPASSGAGGISPQHIAQD---------- 54
Query: 356 HRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAY 415
L+ PG PPD ATV L+ L + + E + +++
Sbjct: 55 ---SSLDGPPG--PPD---GATVPLEGFSL--------SQAADLANKGPKWEKS-HAEIA 97
Query: 416 KRSKRQTLREARMTE-------KLEKQQKIEQERKRRQKHQEYLNSILQH-AKDFKEYHR 467
+++K + E R+ E L++ K+ E R + H +YL +Q + DF + R
Sbjct: 98 EQAKHEAEIETRIAELRKEGFWSLKRLPKVP-EPPRPKGHWDYLCEEMQWLSADFAQERR 156
Query: 468 SVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLA 527
G +K+ + V H EQ+++ ER +E +Q K RR+A
Sbjct: 157 WKRGVARKVVRMVIRHH----EEQRQKEERARRE-----------------EQAKLRRIA 195
Query: 528 YLL-QQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDE 586
+ + ++ +N+ +V + KQ +EK RKK + + + +G + D
Sbjct: 196 STMAKDVRQFWSNVEKVV-QFKQQSRLEEK-----RKKALDLHLD---FIVGQTEKYSDL 246
Query: 587 SSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEED 646
SQ + P+ + + L A + P S ++ D D++ ++
Sbjct: 247 LSQSLNQPLTSSKAGSSPCLGSSSAASSPP-------------PPASRLDDEDGDFQPQE 293
Query: 647 EEEESSRQETEEKILLDPNSEEVSEKD 673
+EEE + E + + N E ++
Sbjct: 294 DEEEDDEETIEVEEQQEGNDAEAQRRE 320
Score = 35.4 bits (80), Expect = 0.44
Identities = 37/152 (24%), Positives = 54/152 (35%), Gaps = 26/152 (17%)
Query: 14 GPSPGPGPSP----GPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTMGSTDFPQEG 69
G P PGP P+L P PGP P +GP P V P P + + + G
Sbjct: 2891 GADPVPGPETLIVADPVLEPQLIPGPQP------LGPQP----VHRPNPLLSPVEKRRRG 2940
Query: 70 MHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLG 129
+ + G + G+ + PPHP P P+ + P +
Sbjct: 2941 RPPKARDLP---IPGTISSAGDGNSESRTQPPPHPSPLTPLPPL------LVCPTATVAN 2991
Query: 130 APEHV---SSPMSGGGPTPPQMPPSQPGALIP 158
V +SP PP+ PPS + +P
Sbjct: 2992 TVTTVTISTSPPKRKRGRPPKNPPSPRPSQLP 3023
Score = 33.9 bits (76), Expect = 1.3
Identities = 37/124 (29%), Positives = 47/124 (37%), Gaps = 34/124 (27%)
Query: 245 QPQTQQQQQPALV--NYNRPSGP-------GPELSGPSTPQKLPVPAPGGRPSPAPPAAA 295
QP +Q+ + +V N P GP GPELS TP +P P A PA
Sbjct: 999 QPVPKQEGRTVVVVNNPRAPLGPVPVRPPPGPELSAQPTPGPVPQVLPASLMVSASPAGP 1058
Query: 296 Q-PPAAAVPGP-----------SVPQPAPG----------QPSPVLQLQQKQS---RISP 330
PA+ PGP S+PQ P P+P L L+ R+SP
Sbjct: 1059 PLIPASRPPGPVLLPPLQPNSGSLPQVLPSPLGVLSGTSRPPTPTLSLKPTPPAPVRLSP 1118
Query: 331 IQKP 334
P
Sbjct: 1119 APPP 1122
Score = 32.3 bits (72), Expect = 3.7
Identities = 38/145 (26%), Positives = 51/145 (35%), Gaps = 26/145 (17%)
Query: 244 PQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAP-PAAAQPPAAAV 302
P P+ PA++N P P L TP +LP P G +P P P +P V
Sbjct: 1329 PAPRPPSSGLPAVLN------PRPTL----TPGRLPTPTLGTARAPMPTPTLVRPLLKLV 1378
Query: 303 --PGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGL-----DPVEILQEREYRLQARIA 355
P P V APG + SP+ P L P+ I
Sbjct: 1379 HSPSPEVSASAPGAAPLTIS--------SPLHVPSSLPGPASSPMPIPNSSPLASPVSST 1430
Query: 356 HRIQELENLPGSLPPDLRTKATVEL 380
+ +LP S+P L A+ L
Sbjct: 1431 VSVPLSSSLPISVPTTLPAPASAPL 1455
Score = 31.2 bits (69), Expect = 8.3
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 1489 AKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPV 1548
A + E E E EE +E+S S++ SV +D+ D+
Sbjct: 472 ANSSDCEPEGPVEAEEPPQEDSSSQSDSV---------EDRSEDEEDEHSEEEETSGSSA 522
Query: 1549 VSDFDSDEEQDEREQSEGSGTDDE 1572
+ +S+E +D + QS+ +++
Sbjct: 523 SEESESEESEDAQSQSQADEEEED 546
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 263 bits (671), Expect = 1e-69
Identities = 207/762 (27%), Positives = 354/762 (46%), Gaps = 89/762 (11%)
Query: 499 EKERMRRLMAEDEEGYRK-LIDQKK----------DRRLAYLLQQTDEYVANLTNLVWEH 547
++++ R++M + G+ K L DQ K ++R A A + N +
Sbjct: 256 QEKKPRKIMLNEASGFEKYLADQAKLSFERKKQGCNKRAARKAPAPVTPPAPVQNKNKPN 315
Query: 548 KQAQAAKEKKKRRRRK-KKAEENA-------------EGGESALGPDGEPIDESSQMSDL 593
K+A+ +K++R ++ KK ++ A ES + P+ E E +
Sbjct: 316 KKARVLSKKEERLKKHIKKLQKRALQFQGKVGLPKARRPWESDMRPEAEGDSEGEESEYF 375
Query: 594 PVKVTHTETGKVLFGPEAPKASQLDAWLEMNP---GYEVAPRSDSEESDSDYEEEDEEEE 650
P + E + G EA + + E+ P G + + +E D D+ EE
Sbjct: 376 PTEEEEEEEDDEVEGAEADLSGDGTDY-ELKPLPKGGKRQKKVPVQEIDDDFFPSSGEEA 434
Query: 651 SSRQETE-----EKI--LLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYT 703
+ E K+ D E+ ++ ++ + QD + ++ + S + +
Sbjct: 435 EAASVGEGGGGGRKVGRYRDDGDEDYYKQRLRRWNKLRLQDKEKRLKLEDDSEESDAEFD 494
Query: 704 VAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALI 763
+ + K+ L YQ G+ W+ L+ GIL DEMGLGKTIQ IA +
Sbjct: 495 EGFKVPGFLFKK--------LFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFL 546
Query: 764 TYLMEHKRLN----------GPYLIIVPLSTLSNWTYEFDKWAPS--VVKISYKGTPAMR 811
L K GP +I+ P + + W EF W P V + G+ +
Sbjct: 547 AGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHK 606
Query: 812 RSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 871
+ + + + +L+T+Y YI + +++ W Y+I+DEGH+++N + +T +
Sbjct: 607 KEKLIRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACK-QF 665
Query: 872 VAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--ERVDLNEE 929
P RI+L+G+P+QN L ELW+L +F+ P + F + F+ P M G + +
Sbjct: 666 RTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVK 725
Query: 930 ETILIIRRLHKVLRPFLLRRLKKEVESQL--PEKVEYVIKCDMSALQKILYRHMQAKGIL 987
L + P+LLRR+K +V+ L P+K E V+ C ++ Q +Y++
Sbjct: 726 TAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFV----- 780
Query: 988 LTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQH---------IEESFAEHLGYSNG 1038
S++ + G + + ++ LRKICNHP +F +E + GY
Sbjct: 781 ---DSKEVYRILNGEMQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGY--- 834
Query: 1039 VINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDG 1098
++ SGK +++ +L RVLLF Q ++ I+E + + + YL++DG
Sbjct: 835 -------WKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDG 887
Query: 1099 TTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQD 1158
TT R L+ ++NE S F+FLL+TR GGLG+NL A+ VVI+D DWNP D QA++
Sbjct: 888 TTTIASRQPLITRYNEDTS-IFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARE 946
Query: 1159 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1200
RA RIGQ+ +V V RL T ++EEKI +K + +V++
Sbjct: 947 RAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLK 988
Score = 35.8 bits (81), Expect = 0.34
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 1491 EEESEDESNEEE---EEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKP 1547
E E + E E E EE+EEE + E + + + + D + + KG KR + +
Sbjct: 362 EAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGDGTDYELKPLPKGGKRQKKVPVQE 421
Query: 1548 VVSDF--DSDEEQDEREQSEGSG 1568
+ DF S EE + EG G
Sbjct: 422 IDDDFFPSSGEEAEAASVGEGGG 444
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,905,479
Number of Sequences: 37866
Number of extensions: 4657854
Number of successful extensions: 127789
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 2359
Number of HSP's that attempted gapping in prelim test: 38386
Number of HSP's gapped (non-prelim): 47659
length of query: 1572
length of database: 18,247,518
effective HSP length: 116
effective length of query: 1456
effective length of database: 13,855,062
effective search space: 20172970272
effective search space used: 20172970272
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 69 (31.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.