Guide to the Human Genome
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Search of human proteins with 48255898

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
         (1572 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|48255898 SWI/SNF-related matrix-associated actin-dependent re...  3160   0.0  
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re...  3148   0.0  
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r...  2423   0.0  
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r...  2419   0.0  
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r...  2418   0.0  
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r...  2413   0.0  
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r...  2402   0.0  
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re...  2402   0.0  
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r...  2385   0.0  
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r...   449   e-125
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re...   440   e-123
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re...   434   e-121
gi|118421089 chromodomain helicase DNA binding protein 2 isoform...   408   e-113
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ...   402   e-111
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ...   402   e-111
gi|158420731 chromodomain helicase DNA binding protein 3 isoform...   402   e-111
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa...   392   e-108
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa...   392   e-108
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa...   390   e-108
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa...   387   e-107
gi|21914927 helicase, lymphoid-specific [Homo sapiens]                379   e-105
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s...   375   e-103
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa...   364   e-100
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa...   362   1e-99
gi|148612870 chromodomain helicase DNA binding protein 1-like [H...   347   4e-95
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ...   303   1e-81
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ...   301   3e-81
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ...   301   3e-81
gi|146219843 Snf2-related CBP activator protein [Homo sapiens]        269   1e-71
gi|4557565 excision repair cross-complementing rodent repair def...   263   1e-69

>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a2 isoform b [Homo sapiens]
          Length = 1572

 Score = 3160 bits (8192), Expect = 0.0
 Identities = 1572/1572 (100%), Positives = 1572/1572 (100%)

Query: 1    MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTM 60
            MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTM
Sbjct: 1    MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTM 60

Query: 61   GSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGY 120
            GSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGY
Sbjct: 61   GSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGY 120

Query: 121  MSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLH 180
            MSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLH
Sbjct: 121  MSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLH 180

Query: 181  QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQ 240
            QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQ
Sbjct: 181  QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQ 240

Query: 241  QQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAA 300
            QQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAA
Sbjct: 241  QQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAA 300

Query: 301  AVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQE 360
            AVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQE
Sbjct: 301  AVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQE 360

Query: 361  LENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKR 420
            LENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKR
Sbjct: 361  LENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKR 420

Query: 421  QTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAV 480
            QTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAV
Sbjct: 421  QTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAV 480

Query: 481  ATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANL 540
            ATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANL
Sbjct: 481  ATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANL 540

Query: 541  TNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHT 600
            TNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHT
Sbjct: 541  TNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHT 600

Query: 601  ETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKI 660
            ETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKI
Sbjct: 601  ETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKI 660

Query: 661  LLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLI 720
            LLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLI
Sbjct: 661  LLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLI 720

Query: 721  NGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIV 780
            NGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIV
Sbjct: 721  NGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIV 780

Query: 781  PLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHIL 840
            PLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHIL
Sbjct: 781  PLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHIL 840

Query: 841  AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLP 900
            AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLP
Sbjct: 841  AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLP 900

Query: 901  TIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPE 960
            TIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPE
Sbjct: 901  TIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPE 960

Query: 961  KVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPY 1020
            KVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPY
Sbjct: 961  KVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPY 1020

Query: 1021 MFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMT 1080
            MFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMT
Sbjct: 1021 MFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMT 1080

Query: 1081 IMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADT 1140
            IMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADT
Sbjct: 1081 IMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADT 1140

Query: 1141 VVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1200
            VVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ
Sbjct: 1141 VVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1200

Query: 1201 AGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDR 1260
            AGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDR
Sbjct: 1201 AGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDR 1260

Query: 1261 RREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDAL 1320
            RREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDAL
Sbjct: 1261 RREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDAL 1320

Query: 1321 TEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNP 1380
            TEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNP
Sbjct: 1321 TEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNP 1380

Query: 1381 PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN 1440
            PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN
Sbjct: 1381 PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN 1440

Query: 1441 HKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNE 1500
            HKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNE
Sbjct: 1441 HKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNE 1500

Query: 1501 EEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDE 1560
            EEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDE
Sbjct: 1501 EEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDE 1560

Query: 1561 REQSEGSGTDDE 1572
            REQSEGSGTDDE
Sbjct: 1561 REQSEGSGTDDE 1572


>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a2 isoform a [Homo sapiens]
          Length = 1590

 Score = 3148 bits (8163), Expect = 0.0
 Identities = 1572/1590 (98%), Positives = 1572/1590 (98%), Gaps = 18/1590 (1%)

Query: 1    MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTM 60
            MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTM
Sbjct: 1    MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTM 60

Query: 61   GSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGY 120
            GSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGY
Sbjct: 61   GSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGY 120

Query: 121  MSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLH 180
            MSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLH
Sbjct: 121  MSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLH 180

Query: 181  QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQ 240
            QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQ
Sbjct: 181  QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQ 240

Query: 241  QQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAA 300
            QQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAA
Sbjct: 241  QQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAA 300

Query: 301  AVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQE 360
            AVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQE
Sbjct: 301  AVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQE 360

Query: 361  LENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKR 420
            LENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKR
Sbjct: 361  LENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKR 420

Query: 421  QTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAV 480
            QTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAV
Sbjct: 421  QTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAV 480

Query: 481  ATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANL 540
            ATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANL
Sbjct: 481  ATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANL 540

Query: 541  TNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHT 600
            TNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHT
Sbjct: 541  TNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHT 600

Query: 601  ETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKI 660
            ETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKI
Sbjct: 601  ETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKI 660

Query: 661  LLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLI 720
            LLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLI
Sbjct: 661  LLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLI 720

Query: 721  NGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIV 780
            NGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIV
Sbjct: 721  NGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIV 780

Query: 781  PLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHIL 840
            PLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHIL
Sbjct: 781  PLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHIL 840

Query: 841  AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLP 900
            AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLP
Sbjct: 841  AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLP 900

Query: 901  TIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPE 960
            TIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPE
Sbjct: 901  TIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPE 960

Query: 961  KVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPY 1020
            KVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPY
Sbjct: 961  KVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPY 1020

Query: 1021 MFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMT 1080
            MFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMT
Sbjct: 1021 MFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMT 1080

Query: 1081 IMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADT 1140
            IMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADT
Sbjct: 1081 IMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADT 1140

Query: 1141 VVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1200
            VVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ
Sbjct: 1141 VVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1200

Query: 1201 AGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDR 1260
            AGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDR
Sbjct: 1201 AGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDR 1260

Query: 1261 RREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDAL 1320
            RREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDAL
Sbjct: 1261 RREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDAL 1320

Query: 1321 TEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNP 1380
            TEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNP
Sbjct: 1321 TEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNP 1380

Query: 1381 PKLTKQMNAIIDTVINYKD------------------SSGRQLSEVFIQLPSRKELPEYY 1422
            PKLTKQMNAIIDTVINYKD                  SSGRQLSEVFIQLPSRKELPEYY
Sbjct: 1381 PKLTKQMNAIIDTVINYKDRCNVEKVPSNSQLEIEGNSSGRQLSEVFIQLPSRKELPEYY 1440

Query: 1423 ELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFK 1482
            ELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFK
Sbjct: 1441 ELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFK 1500

Query: 1483 SARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNR 1542
            SARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNR
Sbjct: 1501 SARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNR 1560

Query: 1543 GKAKPVVSDFDSDEEQDEREQSEGSGTDDE 1572
            GKAKPVVSDFDSDEEQDEREQSEGSGTDDE
Sbjct: 1561 GKAKPVVSDFDSDEEQDEREQSEGSGTDDE 1590


>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform F [Homo sapiens]
          Length = 1613

 Score = 2423 bits (6280), Expect = 0.0
 Identities = 1246/1632 (76%), Positives = 1368/1632 (83%), Gaps = 81/1632 (4%)

Query: 1    MSTPTDP-GAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPT 59
            MSTP  P G  P PGPSPGPGPSPG +LGPSPGP  SPGS HSMMGPSPGPPS  HP+PT
Sbjct: 1    MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGP--SPGSAHSMMGPSPGPPSAGHPIPT 58

Query: 60   MGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPP-HPGMGPPQSPMDQHSQ 118
             G   +PQ+ MHQMHKP++ +H+KG+ +D     MKG GMR   H GMGPP SPMDQHSQ
Sbjct: 59   QGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQ 118

Query: 119  GYMSPHPSPLGAPEHVSSPMSGGGPTP-PQMPPSQPGALIPG-DPQAMSQPNRGPSPFSP 176
            GY    PSPLG  EH SSP+   GP+  PQM     GA + G DPQA+ Q NRGP+PF+ 
Sbjct: 119  GY----PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174

Query: 177  VQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQ 236
             QLHQLRAQI+AYKMLARGQPLP+ LQ+AVQGKR +PG+QQQ                  
Sbjct: 175  NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG- 233

Query: 237  QQPQQQPPQPQTQQQQQPALVNYNRPSG------------------PGPELSGP------ 272
                   P P       PA  NY+RP G                  PG    GP      
Sbjct: 234  -------PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPE 286

Query: 273  ----------STPQKLPVPAPGGRPSPAPPAAAQPPAAA-VPGPSVPQPA-PGQPSPVLQ 320
                      STPQKL  P P GRPSPAPPA   PPAA+ V  P    P  P QP+P++ 
Sbjct: 287  GPMANAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQPAQPAPMVP 344

Query: 321  LQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVEL 380
            L QKQSRI+PIQKP+GLDPVEILQEREYRLQARIAHRIQELENLPGSL  DLRTKAT+EL
Sbjct: 345  LHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIEL 404

Query: 381  KALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQ 440
            KALRLLNFQRQLRQEVV CMRRDT LETALN+KAYKRSKRQ+LREAR+TEKLEKQQKIEQ
Sbjct: 405  KALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQ 464

Query: 441  ERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEK 500
            ERKRRQKHQEYLNSILQHAKDFKEYHRSV GKIQKL+KAVAT+HANTEREQKKE ERIEK
Sbjct: 465  ERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEK 524

Query: 501  ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRR 560
            ERMRRLMAEDEEGYRKLIDQKKD+RLAYLLQQTDEYVANLT LV +HK AQ AKEKKK++
Sbjct: 525  ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKK 584

Query: 561  RRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAW 620
            ++KK   ENAEG   A+GPDGEP+DE+SQMSDLPVKV H E+GK+L G +APKA QL+AW
Sbjct: 585  KKKKA--ENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAW 642

Query: 621  LEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQET-------EEKILLDPNSEEVSEKD 673
            LEMNPGYEVAPRSDSEES S+ EEE+EEEE  +          E+K + DP+S++VSE D
Sbjct: 643  LEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVD 702

Query: 674  AKQIIETAKQDVDDEYSM-QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGL 732
            A+ IIE AKQDVDDEY + Q  ARG QSYY VAHA++ERV+KQSAL++NG LK YQ++GL
Sbjct: 703  ARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGL 762

Query: 733  EWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEF 792
            EW+VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR+NGP+LIIVPLSTLSNW YEF
Sbjct: 763  EWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEF 822

Query: 793  DKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 852
            DKWAPSVVK+SYKG+PA RR+ VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE
Sbjct: 823  DKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882

Query: 853  GHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 912
            GHRMKNHHCKLTQVLNTHYVAPRR+LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW
Sbjct: 883  GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942

Query: 913  FNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSA 972
            FNAPFAMTGE+VDLNEEETILIIRRLHKVLRPFLLRRLKKEVE+QLPEKVEYVIKCDMSA
Sbjct: 943  FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002

Query: 973  LQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEH 1032
            LQ++LYRHMQAKG+LLTDGSEKDKKGKGG KTLMNTIMQLRKICNHPYMFQHIEESF+EH
Sbjct: 1003 LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEH 1062

Query: 1033 LGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFL 1092
            LG++ G++ G +LYRASGKFELLDRILPKLRATNH+VLLFCQMTSLMTIMEDYFA+R F 
Sbjct: 1063 LGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122

Query: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
            YLRLDGTTK+EDR  LLK FNEPGS+YFIFLLSTRAGGLGLNLQ+ADTV+IFDSDWNPHQ
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182

Query: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1212
            DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242

Query: 1213 RRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKP 1272
            RRAFLQAILEHEE++EEEDEVPDDET+NQMIAR EEEFDLFMRMD+DRRRE+ARNPKRKP
Sbjct: 1243 RRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKP 1302

Query: 1273 RLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDG 1332
            RLMEEDELPSWIIKDDAEVERLTCEEEEEK+FGRGSR R++VDYSD+LTEKQWL+AIE+G
Sbjct: 1303 RLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEG 1362

Query: 1333 NLEEMEEEVRLKKRKRRRNVDKDPA------------KEDVEKAKKRRGRPPAEKLSPNP 1380
             LEE+EEEVR KK  R+R  D D              K+D  K +K+RGRPPAEKLSPNP
Sbjct: 1363 TLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNP 1422

Query: 1381 PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN 1440
            P LTK+M  I+D VI YKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN
Sbjct: 1423 PNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN 1482

Query: 1441 HKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNE 1500
            HKYRSL DLEKDVMLLC NAQTFNLEGS IYEDSIVLQSVF S RQKI KE++SE E +E
Sbjct: 1483 HKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESE 1542

Query: 1501 EEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGK-GKKRPNRG-KAKPVVSDFDSDEEQ 1558
            EEEE +EE SESE++SVKVKIKL +K +K +D+ K G++RP+RG +AKPVVSD DS+EEQ
Sbjct: 1543 EEEEGEEEGSESESRSVKVKIKLGRK-EKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQ 1601

Query: 1559 DEREQSEGSGTD 1570
            +E     GS  D
Sbjct: 1602 EEDRSGSGSEED 1613


>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform E [Homo sapiens]
          Length = 1614

 Score = 2419 bits (6268), Expect = 0.0
 Identities = 1246/1633 (76%), Positives = 1368/1633 (83%), Gaps = 82/1633 (5%)

Query: 1    MSTPTDP-GAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPT 59
            MSTP  P G  P PGPSPGPGPSPG +LGPSPGP  SPGS HSMMGPSPGPPS  HP+PT
Sbjct: 1    MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGP--SPGSAHSMMGPSPGPPSAGHPIPT 58

Query: 60   MGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPP-HPGMGPPQSPMDQHSQ 118
             G   +PQ+ MHQMHKP++ +H+KG+ +D     MKG GMR   H GMGPP SPMDQHSQ
Sbjct: 59   QGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQ 118

Query: 119  GYMSPHPSPLGAPEHVSSPMSGGGPTP-PQMPPSQPGALIPG-DPQAMSQPNRGPSPFSP 176
            GY    PSPLG  EH SSP+   GP+  PQM     GA + G DPQA+ Q NRGP+PF+ 
Sbjct: 119  GY----PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174

Query: 177  VQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQ 236
             QLHQLRAQI+AYKMLARGQPLP+ LQ+AVQGKR +PG+QQQ                  
Sbjct: 175  NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG- 233

Query: 237  QQPQQQPPQPQTQQQQQPALVNYNRPSG------------------PGPELSGP------ 272
                   P P       PA  NY+RP G                  PG    GP      
Sbjct: 234  -------PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPE 286

Query: 273  ----------STPQKLPVPAPGGRPSPAPPAAAQPPAAA-VPGPSVPQPA-PGQPSPVLQ 320
                      STPQKL  P P GRPSPAPPA   PPAA+ V  P    P  P QP+P++ 
Sbjct: 287  GPMANAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQPAQPAPMVP 344

Query: 321  LQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVEL 380
            L QKQSRI+PIQKP+GLDPVEILQEREYRLQARIAHRIQELENLPGSL  DLRTKAT+EL
Sbjct: 345  LHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIEL 404

Query: 381  KALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQ 440
            KALRLLNFQRQLRQEVV CMRRDT LETALN+KAYKRSKRQ+LREAR+TEKLEKQQKIEQ
Sbjct: 405  KALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQ 464

Query: 441  ERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEK 500
            ERKRRQKHQEYLNSILQHAKDFKEYHRSV GKIQKL+KAVAT+HANTEREQKKE ERIEK
Sbjct: 465  ERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEK 524

Query: 501  ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRR 560
            ERMRRLMAEDEEGYRKLIDQKKD+RLAYLLQQTDEYVANLT LV +HK AQ AKEKKK++
Sbjct: 525  ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKK 584

Query: 561  RRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAW 620
            ++KK   ENAEG   A+GPDGEP+DE+SQMSDLPVKV H E+GK+L G +APKA QL+AW
Sbjct: 585  KKKKA--ENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAW 642

Query: 621  LEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQET-------EEKILLDPNSEEVSEKD 673
            LEMNPGYEVAPRSDSEES S+ EEE+EEEE  +          E+K + DP+S++VSE D
Sbjct: 643  LEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVD 702

Query: 674  AKQIIETAKQDVDDEYSM-QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGL 732
            A+ IIE AKQDVDDEY + Q  ARG QSYY VAHA++ERV+KQSAL++NG LK YQ++GL
Sbjct: 703  ARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGL 762

Query: 733  EWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEF 792
            EW+VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR+NGP+LIIVPLSTLSNW YEF
Sbjct: 763  EWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEF 822

Query: 793  DKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 852
            DKWAPSVVK+SYKG+PA RR+ VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE
Sbjct: 823  DKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882

Query: 853  GHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 912
            GHRMKNHHCKLTQVLNTHYVAPRR+LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW
Sbjct: 883  GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942

Query: 913  FNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSA 972
            FNAPFAMTGE+VDLNEEETILIIRRLHKVLRPFLLRRLKKEVE+QLPEKVEYVIKCDMSA
Sbjct: 943  FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002

Query: 973  LQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEH 1032
            LQ++LYRHMQAKG+LLTDGSEKDKKGKGG KTLMNTIMQLRKICNHPYMFQHIEESF+EH
Sbjct: 1003 LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEH 1062

Query: 1033 LGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFL 1092
            LG++ G++ G +LYRASGKFELLDRILPKLRATNH+VLLFCQMTSLMTIMEDYFA+R F 
Sbjct: 1063 LGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122

Query: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
            YLRLDGTTK+EDR  LLK FNEPGS+YFIFLLSTRAGGLGLNLQ+ADTV+IFDSDWNPHQ
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182

Query: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1212
            DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242

Query: 1213 RRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKP 1272
            RRAFLQAILEHEE++EEEDEVPDDET+NQMIAR EEEFDLFMRMD+DRRRE+ARNPKRKP
Sbjct: 1243 RRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKP 1302

Query: 1273 RLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDG 1332
            RLMEEDELPSWIIKDDAEVERLTCEEEEEK+FGRGSR R++VDYSD+LTEKQWL+AIE+G
Sbjct: 1303 RLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEG 1362

Query: 1333 NLEEMEEEVRLKKRKRRRNVDKDPA------------KEDVEKAKKRRGRPPAEKLSPNP 1380
             LEE+EEEVR KK  R+R  D D              K+D  K +K+RGRPPAEKLSPNP
Sbjct: 1363 TLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNP 1422

Query: 1381 PKLTKQMNAIIDTVINYKD-SSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIR 1439
            P LTK+M  I+D VI YKD SSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIR
Sbjct: 1423 PNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIR 1482

Query: 1440 NHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESN 1499
            NHKYRSL DLEKDVMLLC NAQTFNLEGS IYEDSIVLQSVF S RQKI KE++SE E +
Sbjct: 1483 NHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEES 1542

Query: 1500 EEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGK-GKKRPNRG-KAKPVVSDFDSDEE 1557
            EEEEE +EE SESE++SVKVKIKL +K +K +D+ K G++RP+RG +AKPVVSD DS+EE
Sbjct: 1543 EEEEEGEEEGSESESRSVKVKIKLGRK-EKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEE 1601

Query: 1558 QDEREQSEGSGTD 1570
            Q+E     GS  D
Sbjct: 1602 QEEDRSGSGSEED 1614


>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform D [Homo sapiens]
          Length = 1616

 Score = 2418 bits (6266), Expect = 0.0
 Identities = 1246/1635 (76%), Positives = 1368/1635 (83%), Gaps = 84/1635 (5%)

Query: 1    MSTPTDP-GAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPT 59
            MSTP  P G  P PGPSPGPGPSPG +LGPSPGP  SPGS HSMMGPSPGPPS  HP+PT
Sbjct: 1    MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGP--SPGSAHSMMGPSPGPPSAGHPIPT 58

Query: 60   MGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPP-HPGMGPPQSPMDQHSQ 118
             G   +PQ+ MHQMHKP++ +H+KG+ +D     MKG GMR   H GMGPP SPMDQHSQ
Sbjct: 59   QGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQ 118

Query: 119  GYMSPHPSPLGAPEHVSSPMSGGGPTP-PQMPPSQPGALIPG-DPQAMSQPNRGPSPFSP 176
            GY    PSPLG  EH SSP+   GP+  PQM     GA + G DPQA+ Q NRGP+PF+ 
Sbjct: 119  GY----PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174

Query: 177  VQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQ 236
             QLHQLRAQI+AYKMLARGQPLP+ LQ+AVQGKR +PG+QQQ                  
Sbjct: 175  NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG- 233

Query: 237  QQPQQQPPQPQTQQQQQPALVNYNRPSG------------------PGPELSGP------ 272
                   P P       PA  NY+RP G                  PG    GP      
Sbjct: 234  -------PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPE 286

Query: 273  ----------STPQKLPVPAPGGRPSPAPPAAAQPPAAA-VPGPSVPQPA-PGQPSPVLQ 320
                      STPQKL  P P GRPSPAPPA   PPAA+ V  P    P  P QP+P++ 
Sbjct: 287  GPMANAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQPAQPAPMVP 344

Query: 321  LQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVEL 380
            L QKQSRI+PIQKP+GLDPVEILQEREYRLQARIAHRIQELENLPGSL  DLRTKAT+EL
Sbjct: 345  LHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIEL 404

Query: 381  KALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQ 440
            KALRLLNFQRQLRQEVV CMRRDT LETALN+KAYKRSKRQ+LREAR+TEKLEKQQKIEQ
Sbjct: 405  KALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQ 464

Query: 441  ERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEK 500
            ERKRRQKHQEYLNSILQHAKDFKEYHRSV GKIQKL+KAVAT+HANTEREQKKE ERIEK
Sbjct: 465  ERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEK 524

Query: 501  ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRR 560
            ERMRRLMAEDEEGYRKLIDQKKD+RLAYLLQQTDEYVANLT LV +HK AQ AKEKKK++
Sbjct: 525  ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKK 584

Query: 561  RRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAW 620
            ++KK   ENAEG   A+GPDGEP+DE+SQMSDLPVKV H E+GK+L G +APKA QL+AW
Sbjct: 585  KKKKA--ENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAW 642

Query: 621  LEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQET-------EEKILLDPNSEEVSEKD 673
            LEMNPGYEVAPRSDSEES S+ EEE+EEEE  +          E+K + DP+S++VSE D
Sbjct: 643  LEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVD 702

Query: 674  AKQIIETAKQDVDDEYSM-QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGL 732
            A+ IIE AKQDVDDEY + Q  ARG QSYY VAHA++ERV+KQSAL++NG LK YQ++GL
Sbjct: 703  ARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGL 762

Query: 733  EWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEF 792
            EW+VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR+NGP+LIIVPLSTLSNW YEF
Sbjct: 763  EWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEF 822

Query: 793  DKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 852
            DKWAPSVVK+SYKG+PA RR+ VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE
Sbjct: 823  DKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882

Query: 853  GHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 912
            GHRMKNHHCKLTQVLNTHYVAPRR+LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW
Sbjct: 883  GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942

Query: 913  FNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSA 972
            FNAPFAMTGE+VDLNEEETILIIRRLHKVLRPFLLRRLKKEVE+QLPEKVEYVIKCDMSA
Sbjct: 943  FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002

Query: 973  LQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEH 1032
            LQ++LYRHMQAKG+LLTDGSEKDKKGKGG KTLMNTIMQLRKICNHPYMFQHIEESF+EH
Sbjct: 1003 LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEH 1062

Query: 1033 LGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFL 1092
            LG++ G++ G +LYRASGKFELLDRILPKLRATNH+VLLFCQMTSLMTIMEDYFA+R F 
Sbjct: 1063 LGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122

Query: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
            YLRLDGTTK+EDR  LLK FNEPGS+YFIFLLSTRAGGLGLNLQ+ADTV+IFDSDWNPHQ
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182

Query: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1212
            DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242

Query: 1213 RRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKP 1272
            RRAFLQAILEHEE++EEEDEVPDDET+NQMIAR EEEFDLFMRMD+DRRRE+ARNPKRKP
Sbjct: 1243 RRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKP 1302

Query: 1273 RLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAI 1329
            RLMEEDELPSWIIKDDAEVERLTCEEEEEK+FGRGSR R++VDYSD+LTEKQW   L+AI
Sbjct: 1303 RLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKTLKAI 1362

Query: 1330 EDGNLEEMEEEVRLKKRKRRRNVDKDPA------------KEDVEKAKKRRGRPPAEKLS 1377
            E+G LEE+EEEVR KK  R+R  D D              K+D  K +K+RGRPPAEKLS
Sbjct: 1363 EEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLS 1422

Query: 1378 PNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKER 1437
            PNPP LTK+M  I+D VI YKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKER
Sbjct: 1423 PNPPNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKER 1482

Query: 1438 IRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDE 1497
            IRNHKYRSL DLEKDVMLLC NAQTFNLEGS IYEDSIVLQSVF S RQKI KE++SE E
Sbjct: 1483 IRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGE 1542

Query: 1498 SNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGK-GKKRPNRG-KAKPVVSDFDSD 1555
             +EEEEE +EE SESE++SVKVKIKL +K +K +D+ K G++RP+RG +AKPVVSD DS+
Sbjct: 1543 ESEEEEEGEEEGSESESRSVKVKIKLGRK-EKAQDRLKGGRRRPSRGSRAKPVVSDDDSE 1601

Query: 1556 EEQDEREQSEGSGTD 1570
            EEQ+E     GS  D
Sbjct: 1602 EEQEEDRSGSGSEED 1616


>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform C [Homo sapiens]
          Length = 1617

 Score = 2413 bits (6254), Expect = 0.0
 Identities = 1246/1636 (76%), Positives = 1368/1636 (83%), Gaps = 85/1636 (5%)

Query: 1    MSTPTDP-GAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPT 59
            MSTP  P G  P PGPSPGPGPSPG +LGPSPGP  SPGS HSMMGPSPGPPS  HP+PT
Sbjct: 1    MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGP--SPGSAHSMMGPSPGPPSAGHPIPT 58

Query: 60   MGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPP-HPGMGPPQSPMDQHSQ 118
             G   +PQ+ MHQMHKP++ +H+KG+ +D     MKG GMR   H GMGPP SPMDQHSQ
Sbjct: 59   QGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQ 118

Query: 119  GYMSPHPSPLGAPEHVSSPMSGGGPTP-PQMPPSQPGALIPG-DPQAMSQPNRGPSPFSP 176
            GY    PSPLG  EH SSP+   GP+  PQM     GA + G DPQA+ Q NRGP+PF+ 
Sbjct: 119  GY----PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174

Query: 177  VQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQ 236
             QLHQLRAQI+AYKMLARGQPLP+ LQ+AVQGKR +PG+QQQ                  
Sbjct: 175  NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG- 233

Query: 237  QQPQQQPPQPQTQQQQQPALVNYNRPSG------------------PGPELSGP------ 272
                   P P       PA  NY+RP G                  PG    GP      
Sbjct: 234  -------PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPE 286

Query: 273  ----------STPQKLPVPAPGGRPSPAPPAAAQPPAAA-VPGPSVPQPA-PGQPSPVLQ 320
                      STPQKL  P P GRPSPAPPA   PPAA+ V  P    P  P QP+P++ 
Sbjct: 287  GPMANAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQPAQPAPMVP 344

Query: 321  LQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVEL 380
            L QKQSRI+PIQKP+GLDPVEILQEREYRLQARIAHRIQELENLPGSL  DLRTKAT+EL
Sbjct: 345  LHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIEL 404

Query: 381  KALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQ 440
            KALRLLNFQRQLRQEVV CMRRDT LETALN+KAYKRSKRQ+LREAR+TEKLEKQQKIEQ
Sbjct: 405  KALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQ 464

Query: 441  ERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEK 500
            ERKRRQKHQEYLNSILQHAKDFKEYHRSV GKIQKL+KAVAT+HANTEREQKKE ERIEK
Sbjct: 465  ERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEK 524

Query: 501  ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRR 560
            ERMRRLMAEDEEGYRKLIDQKKD+RLAYLLQQTDEYVANLT LV +HK AQ AKEKKK++
Sbjct: 525  ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKK 584

Query: 561  RRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAW 620
            ++KK   ENAEG   A+GPDGEP+DE+SQMSDLPVKV H E+GK+L G +APKA QL+AW
Sbjct: 585  KKKKA--ENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAW 642

Query: 621  LEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQET-------EEKILLDPNSEEVSEKD 673
            LEMNPGYEVAPRSDSEES S+ EEE+EEEE  +          E+K + DP+S++VSE D
Sbjct: 643  LEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVD 702

Query: 674  AKQIIETAKQDVDDEYSM-QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGL 732
            A+ IIE AKQDVDDEY + Q  ARG QSYY VAHA++ERV+KQSAL++NG LK YQ++GL
Sbjct: 703  ARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGL 762

Query: 733  EWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEF 792
            EW+VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR+NGP+LIIVPLSTLSNW YEF
Sbjct: 763  EWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEF 822

Query: 793  DKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 852
            DKWAPSVVK+SYKG+PA RR+ VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE
Sbjct: 823  DKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882

Query: 853  GHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 912
            GHRMKNHHCKLTQVLNTHYVAPRR+LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW
Sbjct: 883  GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942

Query: 913  FNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSA 972
            FNAPFAMTGE+VDLNEEETILIIRRLHKVLRPFLLRRLKKEVE+QLPEKVEYVIKCDMSA
Sbjct: 943  FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002

Query: 973  LQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEH 1032
            LQ++LYRHMQAKG+LLTDGSEKDKKGKGG KTLMNTIMQLRKICNHPYMFQHIEESF+EH
Sbjct: 1003 LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEH 1062

Query: 1033 LGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFL 1092
            LG++ G++ G +LYRASGKFELLDRILPKLRATNH+VLLFCQMTSLMTIMEDYFA+R F 
Sbjct: 1063 LGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122

Query: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
            YLRLDGTTK+EDR  LLK FNEPGS+YFIFLLSTRAGGLGLNLQ+ADTV+IFDSDWNPHQ
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182

Query: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1212
            DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242

Query: 1213 RRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKP 1272
            RRAFLQAILEHEE++EEEDEVPDDET+NQMIAR EEEFDLFMRMD+DRRRE+ARNPKRKP
Sbjct: 1243 RRAFLQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKP 1302

Query: 1273 RLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQW---LRAI 1329
            RLMEEDELPSWIIKDDAEVERLTCEEEEEK+FGRGSR R++VDYSD+LTEKQW   L+AI
Sbjct: 1303 RLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKTLKAI 1362

Query: 1330 EDGNLEEMEEEVRLKKRKRRRNVDKDPA------------KEDVEKAKKRRGRPPAEKLS 1377
            E+G LEE+EEEVR KK  R+R  D D              K+D  K +K+RGRPPAEKLS
Sbjct: 1363 EEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLS 1422

Query: 1378 PNPPKLTKQMNAIIDTVINYKD-SSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKE 1436
            PNPP LTK+M  I+D VI YKD SSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKE
Sbjct: 1423 PNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKE 1482

Query: 1437 RIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESED 1496
            RIRNHKYRSL DLEKDVMLLC NAQTFNLEGS IYEDSIVLQSVF S RQKI KE++SE 
Sbjct: 1483 RIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEG 1542

Query: 1497 ESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGK-GKKRPNRG-KAKPVVSDFDS 1554
            E +EEEEE +EE SESE++SVKVKIKL +K +K +D+ K G++RP+RG +AKPVVSD DS
Sbjct: 1543 EESEEEEEGEEEGSESESRSVKVKIKLGRK-EKAQDRLKGGRRRPSRGSRAKPVVSDDDS 1601

Query: 1555 DEEQDEREQSEGSGTD 1570
            +EEQ+E     GS  D
Sbjct: 1602 EEEQEEDRSGSGSEED 1617


>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform B [Homo sapiens]
          Length = 1647

 Score = 2402 bits (6224), Expect = 0.0
 Identities = 1246/1666 (74%), Positives = 1368/1666 (82%), Gaps = 115/1666 (6%)

Query: 1    MSTPTDP-GAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPT 59
            MSTP  P G  P PGPSPGPGPSPG +LGPSPGP  SPGS HSMMGPSPGPPS  HP+PT
Sbjct: 1    MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGP--SPGSAHSMMGPSPGPPSAGHPIPT 58

Query: 60   MGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPP-HPGMGPPQSPMDQHSQ 118
             G   +PQ+ MHQMHKP++ +H+KG+ +D     MKG GMR   H GMGPP SPMDQHSQ
Sbjct: 59   QGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQ 118

Query: 119  GYMSPHPSPLGAPEHVSSPMSGGGPTP-PQMPPSQPGALIPG-DPQAMSQPNRGPSPFSP 176
            GY    PSPLG  EH SSP+   GP+  PQM     GA + G DPQA+ Q NRGP+PF+ 
Sbjct: 119  GY----PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174

Query: 177  VQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQ 236
             QLHQLRAQI+AYKMLARGQPLP+ LQ+AVQGKR +PG+QQQ                  
Sbjct: 175  NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG- 233

Query: 237  QQPQQQPPQPQTQQQQQPALVNYNRPSG------------------PGPELSGP------ 272
                   P P       PA  NY+RP G                  PG    GP      
Sbjct: 234  -------PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPE 286

Query: 273  ----------STPQKLPVPAPGGRPSPAPPAAAQPPAAA-VPGPSVPQPA-PGQPSPVLQ 320
                      STPQKL  P P GRPSPAPPA   PPAA+ V  P    P  P QP+P++ 
Sbjct: 287  GPMANAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQPAQPAPMVP 344

Query: 321  LQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVEL 380
            L QKQSRI+PIQKP+GLDPVEILQEREYRLQARIAHRIQELENLPGSL  DLRTKAT+EL
Sbjct: 345  LHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIEL 404

Query: 381  KALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQ 440
            KALRLLNFQRQLRQEVV CMRRDT LETALN+KAYKRSKRQ+LREAR+TEKLEKQQKIEQ
Sbjct: 405  KALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQ 464

Query: 441  ERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEK 500
            ERKRRQKHQEYLNSILQHAKDFKEYHRSV GKIQKL+KAVAT+HANTEREQKKE ERIEK
Sbjct: 465  ERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEK 524

Query: 501  ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRR 560
            ERMRRLMAEDEEGYRKLIDQKKD+RLAYLLQQTDEYVANLT LV +HK AQ AKEKKK++
Sbjct: 525  ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKK 584

Query: 561  RRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAW 620
            ++KK   ENAEG   A+GPDGEP+DE+SQMSDLPVKV H E+GK+L G +APKA QL+AW
Sbjct: 585  KKKKA--ENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAW 642

Query: 621  LEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQET-------EEKILLDPNSEEVSEKD 673
            LEMNPGYEVAPRSDSEES S+ EEE+EEEE  +          E+K + DP+S++VSE D
Sbjct: 643  LEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVD 702

Query: 674  AKQIIETAKQDVDDEYSM-QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGL 732
            A+ IIE AKQDVDDEY + Q  ARG QSYY VAHA++ERV+KQSAL++NG LK YQ++GL
Sbjct: 703  ARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGL 762

Query: 733  EWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEF 792
            EW+VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR+NGP+LIIVPLSTLSNW YEF
Sbjct: 763  EWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEF 822

Query: 793  DKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 852
            DKWAPSVVK+SYKG+PA RR+ VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE
Sbjct: 823  DKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882

Query: 853  GHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 912
            GHRMKNHHCKLTQVLNTHYVAPRR+LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW
Sbjct: 883  GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942

Query: 913  FNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSA 972
            FNAPFAMTGE+VDLNEEETILIIRRLHKVLRPFLLRRLKKEVE+QLPEKVEYVIKCDMSA
Sbjct: 943  FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002

Query: 973  LQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEH 1032
            LQ++LYRHMQAKG+LLTDGSEKDKKGKGG KTLMNTIMQLRKICNHPYMFQHIEESF+EH
Sbjct: 1003 LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEH 1062

Query: 1033 LGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFL 1092
            LG++ G++ G +LYRASGKFELLDRILPKLRATNH+VLLFCQMTSLMTIMEDYFA+R F 
Sbjct: 1063 LGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122

Query: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
            YLRLDGTTK+EDR  LLK FNEPGS+YFIFLLSTRAGGLGLNLQ+ADTV+IFDSDWNPHQ
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182

Query: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1212
            DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242

Query: 1213 RRAFLQAILEHEEENE---------------------------------EEDEVPDDETL 1239
            RRAFLQAILEHEE++E                                 EEDEVPDDET+
Sbjct: 1243 RRAFLQAILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETV 1302

Query: 1240 NQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE 1299
            NQMIAR EEEFDLFMRMD+DRRRE+ARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE
Sbjct: 1303 NQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE 1362

Query: 1300 EEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPA-- 1357
            EEK+FGRGSR R++VDYSD+LTEKQWL+AIE+G LEE+EEEVR KK  R+R  D D    
Sbjct: 1363 EEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSS 1422

Query: 1358 ----------KEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSS-GRQLS 1406
                      K+D  K +K+RGRPPAEKLSPNPP LTK+M  I+D VI YKDSS GRQLS
Sbjct: 1423 TPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLS 1482

Query: 1407 EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLE 1466
            EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSL DLEKDVMLLC NAQTFNLE
Sbjct: 1483 EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLE 1542

Query: 1467 GSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKK 1526
            GS IYEDSIVLQSVF S RQKI KE++SE E +EEEEE +EE SESE++SVKVKIKL +K
Sbjct: 1543 GSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRK 1602

Query: 1527 DDKGRDKGK-GKKRPNRG-KAKPVVSDFDSDEEQDEREQSEGSGTD 1570
             +K +D+ K G++RP+RG +AKPVVSD DS+EEQ+E     GS  D
Sbjct: 1603 -EKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSEED 1647


>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform B [Homo sapiens]
          Length = 1647

 Score = 2402 bits (6224), Expect = 0.0
 Identities = 1246/1666 (74%), Positives = 1368/1666 (82%), Gaps = 115/1666 (6%)

Query: 1    MSTPTDP-GAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPT 59
            MSTP  P G  P PGPSPGPGPSPG +LGPSPGP  SPGS HSMMGPSPGPPS  HP+PT
Sbjct: 1    MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGP--SPGSAHSMMGPSPGPPSAGHPIPT 58

Query: 60   MGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPP-HPGMGPPQSPMDQHSQ 118
             G   +PQ+ MHQMHKP++ +H+KG+ +D     MKG GMR   H GMGPP SPMDQHSQ
Sbjct: 59   QGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQ 118

Query: 119  GYMSPHPSPLGAPEHVSSPMSGGGPTP-PQMPPSQPGALIPG-DPQAMSQPNRGPSPFSP 176
            GY    PSPLG  EH SSP+   GP+  PQM     GA + G DPQA+ Q NRGP+PF+ 
Sbjct: 119  GY----PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174

Query: 177  VQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQ 236
             QLHQLRAQI+AYKMLARGQPLP+ LQ+AVQGKR +PG+QQQ                  
Sbjct: 175  NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG- 233

Query: 237  QQPQQQPPQPQTQQQQQPALVNYNRPSG------------------PGPELSGP------ 272
                   P P       PA  NY+RP G                  PG    GP      
Sbjct: 234  -------PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPE 286

Query: 273  ----------STPQKLPVPAPGGRPSPAPPAAAQPPAAA-VPGPSVPQPA-PGQPSPVLQ 320
                      STPQKL  P P GRPSPAPPA   PPAA+ V  P    P  P QP+P++ 
Sbjct: 287  GPMANAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQPAQPAPMVP 344

Query: 321  LQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVEL 380
            L QKQSRI+PIQKP+GLDPVEILQEREYRLQARIAHRIQELENLPGSL  DLRTKAT+EL
Sbjct: 345  LHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIEL 404

Query: 381  KALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQ 440
            KALRLLNFQRQLRQEVV CMRRDT LETALN+KAYKRSKRQ+LREAR+TEKLEKQQKIEQ
Sbjct: 405  KALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQ 464

Query: 441  ERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEK 500
            ERKRRQKHQEYLNSILQHAKDFKEYHRSV GKIQKL+KAVAT+HANTEREQKKE ERIEK
Sbjct: 465  ERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEK 524

Query: 501  ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRR 560
            ERMRRLMAEDEEGYRKLIDQKKD+RLAYLLQQTDEYVANLT LV +HK AQ AKEKKK++
Sbjct: 525  ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKK 584

Query: 561  RRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAW 620
            ++KK   ENAEG   A+GPDGEP+DE+SQMSDLPVKV H E+GK+L G +APKA QL+AW
Sbjct: 585  KKKKA--ENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAW 642

Query: 621  LEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQET-------EEKILLDPNSEEVSEKD 673
            LEMNPGYEVAPRSDSEES S+ EEE+EEEE  +          E+K + DP+S++VSE D
Sbjct: 643  LEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVD 702

Query: 674  AKQIIETAKQDVDDEYSM-QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGL 732
            A+ IIE AKQDVDDEY + Q  ARG QSYY VAHA++ERV+KQSAL++NG LK YQ++GL
Sbjct: 703  ARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGL 762

Query: 733  EWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEF 792
            EW+VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR+NGP+LIIVPLSTLSNW YEF
Sbjct: 763  EWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEF 822

Query: 793  DKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 852
            DKWAPSVVK+SYKG+PA RR+ VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE
Sbjct: 823  DKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882

Query: 853  GHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 912
            GHRMKNHHCKLTQVLNTHYVAPRR+LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW
Sbjct: 883  GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942

Query: 913  FNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSA 972
            FNAPFAMTGE+VDLNEEETILIIRRLHKVLRPFLLRRLKKEVE+QLPEKVEYVIKCDMSA
Sbjct: 943  FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002

Query: 973  LQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEH 1032
            LQ++LYRHMQAKG+LLTDGSEKDKKGKGG KTLMNTIMQLRKICNHPYMFQHIEESF+EH
Sbjct: 1003 LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEH 1062

Query: 1033 LGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFL 1092
            LG++ G++ G +LYRASGKFELLDRILPKLRATNH+VLLFCQMTSLMTIMEDYFA+R F 
Sbjct: 1063 LGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122

Query: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
            YLRLDGTTK+EDR  LLK FNEPGS+YFIFLLSTRAGGLGLNLQ+ADTV+IFDSDWNPHQ
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182

Query: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1212
            DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242

Query: 1213 RRAFLQAILEHEEENE---------------------------------EEDEVPDDETL 1239
            RRAFLQAILEHEE++E                                 EEDEVPDDET+
Sbjct: 1243 RRAFLQAILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETV 1302

Query: 1240 NQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE 1299
            NQMIAR EEEFDLFMRMD+DRRRE+ARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE
Sbjct: 1303 NQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE 1362

Query: 1300 EEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPA-- 1357
            EEK+FGRGSR R++VDYSD+LTEKQWL+AIE+G LEE+EEEVR KK  R+R  D D    
Sbjct: 1363 EEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSS 1422

Query: 1358 ----------KEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSS-GRQLS 1406
                      K+D  K +K+RGRPPAEKLSPNPP LTK+M  I+D VI YKDSS GRQLS
Sbjct: 1423 TPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLS 1482

Query: 1407 EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLE 1466
            EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSL DLEKDVMLLC NAQTFNLE
Sbjct: 1483 EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLE 1542

Query: 1467 GSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKK 1526
            GS IYEDSIVLQSVF S RQKI KE++SE E +EEEEE +EE SESE++SVKVKIKL +K
Sbjct: 1543 GSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRK 1602

Query: 1527 DDKGRDKGK-GKKRPNRG-KAKPVVSDFDSDEEQDEREQSEGSGTD 1570
             +K +D+ K G++RP+RG +AKPVVSD DS+EEQ+E     GS  D
Sbjct: 1603 -EKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSEED 1647


>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform A [Homo sapiens]
          Length = 1679

 Score = 2385 bits (6181), Expect = 0.0
 Identities = 1246/1698 (73%), Positives = 1368/1698 (80%), Gaps = 147/1698 (8%)

Query: 1    MSTPTDP-GAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPT 59
            MSTP  P G  P PGPSPGPGPSPG +LGPSPGP  SPGS HSMMGPSPGPPS  HP+PT
Sbjct: 1    MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGP--SPGSAHSMMGPSPGPPSAGHPIPT 58

Query: 60   MGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPP-HPGMGPPQSPMDQHSQ 118
             G   +PQ+ MHQMHKP++ +H+KG+ +D     MKG GMR   H GMGPP SPMDQHSQ
Sbjct: 59   QGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQ 118

Query: 119  GYMSPHPSPLGAPEHVSSPMSGGGPTP-PQMPPSQPGALIPG-DPQAMSQPNRGPSPFSP 176
            GY    PSPLG  EH SSP+   GP+  PQM     GA + G DPQA+ Q NRGP+PF+ 
Sbjct: 119  GY----PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174

Query: 177  VQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQ 236
             QLHQLRAQI+AYKMLARGQPLP+ LQ+AVQGKR +PG+QQQ                  
Sbjct: 175  NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG- 233

Query: 237  QQPQQQPPQPQTQQQQQPALVNYNRPSG------------------PGPELSGP------ 272
                   P P       PA  NY+RP G                  PG    GP      
Sbjct: 234  -------PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPE 286

Query: 273  ----------STPQKLPVPAPGGRPSPAPPAAAQPPAAA-VPGPSVPQPA-PGQPSPVLQ 320
                      STPQKL  P P GRPSPAPPA   PPAA+ V  P    P  P QP+P++ 
Sbjct: 287  GPMANAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQPAQPAPMVP 344

Query: 321  LQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVEL 380
            L QKQSRI+PIQKP+GLDPVEILQEREYRLQARIAHRIQELENLPGSL  DLRTKAT+EL
Sbjct: 345  LHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIEL 404

Query: 381  KALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQ 440
            KALRLLNFQRQLRQEVV CMRRDT LETALN+KAYKRSKRQ+LREAR+TEKLEKQQKIEQ
Sbjct: 405  KALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQ 464

Query: 441  ERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEK 500
            ERKRRQKHQEYLNSILQHAKDFKEYHRSV GKIQKL+KAVAT+HANTEREQKKE ERIEK
Sbjct: 465  ERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEK 524

Query: 501  ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRR 560
            ERMRRLMAEDEEGYRKLIDQKKD+RLAYLLQQTDEYVANLT LV +HK AQ AKEKKK++
Sbjct: 525  ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKK 584

Query: 561  RRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAW 620
            ++KK   ENAEG   A+GPDGEP+DE+SQMSDLPVKV H E+GK+L G +APKA QL+AW
Sbjct: 585  KKKKA--ENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAW 642

Query: 621  LEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQET-------EEKILLDPNSEEVSEKD 673
            LEMNPGYEVAPRSDSEES S+ EEE+EEEE  +          E+K + DP+S++VSE D
Sbjct: 643  LEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVD 702

Query: 674  AKQIIETAKQDVDDEYSM-QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGL 732
            A+ IIE AKQDVDDEY + Q  ARG QSYY VAHA++ERV+KQSAL++NG LK YQ++GL
Sbjct: 703  ARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGL 762

Query: 733  EWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEF 792
            EW+VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR+NGP+LIIVPLSTLSNW YEF
Sbjct: 763  EWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEF 822

Query: 793  DKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 852
            DKWAPSVVK+SYKG+PA RR+ VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE
Sbjct: 823  DKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882

Query: 853  GHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 912
            GHRMKNHHCKLTQVLNTHYVAPRR+LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW
Sbjct: 883  GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942

Query: 913  FNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSA 972
            FNAPFAMTGE+VDLNEEETILIIRRLHKVLRPFLLRRLKKEVE+QLPEKVEYVIKCDMSA
Sbjct: 943  FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002

Query: 973  LQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEH 1032
            LQ++LYRHMQAKG+LLTDGSEKDKKGKGG KTLMNTIMQLRKICNHPYMFQHIEESF+EH
Sbjct: 1003 LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEH 1062

Query: 1033 LGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFL 1092
            LG++ G++ G +LYRASGKFELLDRILPKLRATNH+VLLFCQMTSLMTIMEDYFA+R F 
Sbjct: 1063 LGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122

Query: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
            YLRLDGTTK+EDR  LLK FNEPGS+YFIFLLSTRAGGLGLNLQ+ADTV+IFDSDWNPHQ
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182

Query: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1212
            DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242

Query: 1213 RRAFLQAILEHEEENE---------------------------------EEDEVPDDETL 1239
            RRAFLQAILEHEE++E                                 EEDEVPDDET+
Sbjct: 1243 RRAFLQAILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETV 1302

Query: 1240 NQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE 1299
            NQMIAR EEEFDLFMRMD+DRRRE+ARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE
Sbjct: 1303 NQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE 1362

Query: 1300 EEKIFGRGSRQRRDVDYSDALTEKQWL--------------------------------R 1327
            EEK+FGRGSR R++VDYSD+LTEKQWL                                +
Sbjct: 1363 EEKMFGRGSRHRKEVDYSDSLTEKQWLKKITGKDIHDTASSVARGLQFQRGLQFCTRASK 1422

Query: 1328 AIEDGNLEEMEEEVRLKKRKRRRNVDKDPA------------KEDVEKAKKRRGRPPAEK 1375
            AIE+G LEE+EEEVR KK  R+R  D D              K+D  K +K+RGRPPAEK
Sbjct: 1423 AIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEK 1482

Query: 1376 LSPNPPKLTKQMNAIIDTVINYKD-SSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKI 1434
            LSPNPP LTK+M  I+D VI YKD SSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKI
Sbjct: 1483 LSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKI 1542

Query: 1435 KERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEES 1494
            KERIRNHKYRSL DLEKDVMLLC NAQTFNLEGS IYEDSIVLQSVF S RQKI KE++S
Sbjct: 1543 KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDS 1602

Query: 1495 EDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGK-GKKRPNRG-KAKPVVSDF 1552
            E E +EEEEE +EE SESE++SVKVKIKL +K +K +D+ K G++RP+RG +AKPVVSD 
Sbjct: 1603 EGEESEEEEEGEEEGSESESRSVKVKIKLGRK-EKAQDRLKGGRRRPSRGSRAKPVVSDD 1661

Query: 1553 DSDEEQDEREQSEGSGTD 1570
            DS+EEQ+E     GS  D
Sbjct: 1662 DSEEEQEEDRSGSGSEED 1679


>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a1 isoform b [Homo sapiens]
          Length = 1042

 Score =  449 bits (1154), Expect = e-125
 Identities = 262/660 (39%), Positives = 385/660 (58%), Gaps = 63/660 (9%)

Query: 610  EAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEV 669
            +APK+ +     EM+P YE   ++D  +      ++ E      Q + +K    P + ++
Sbjct: 71   KAPKSEK-----EMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKL 125

Query: 670  S----EKDAKQIIETA-------KQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSAL 718
                 +KD KQ + +A        +  +DE  +  S + S         +  R E   + 
Sbjct: 126  GRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSN--------VCIRFEVSPSY 177

Query: 719  LINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLI 778
            +  G L+ YQ++GL W++SLY N +NGILADEMGLGKT+QTIAL+ YL  ++ + GP+++
Sbjct: 178  VKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMV 237

Query: 779  IVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLV-PQLRSGKFNVLLTTYEYIIKDK 837
            +VP STL NW  EF +W PS+  I + G    R + +  ++  G+++V +T+YE +IK+K
Sbjct: 238  LVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEK 297

Query: 838  HILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNF 897
             +  K  W+Y+++DE HR+KN   KL++++   + +  R+LLTGTPLQN L ELWALLNF
Sbjct: 298  SVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR-EFKSTNRLLLTGTPLQNNLHELWALLNF 356

Query: 898  LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 957
            LLP +F S   F+ WF+    +  ++          ++ RLH VL+PFLLRR+K +VE  
Sbjct: 357  LLPDVFNSADDFDSWFDTKNCLGDQK----------LVERLHAVLKPFLLRRIKTDVEKS 406

Query: 958  LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICN 1017
            LP K E  I   +S +Q+  Y       IL+ D    +  GK     L+N +MQLRK CN
Sbjct: 407  LPPKKEIKIYLGLSKMQREWYTK-----ILMKDIDVLNSSGKMDKMRLLNILMQLRKCCN 461

Query: 1018 HPYMFQHIEE----SFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFC 1073
            HPY+F   E     +  EH+  SN           SGK  +LD++L KL+    RVL+F 
Sbjct: 462  HPYLFDGAEPGPPYTTDEHI-VSN-----------SGKMVVLDKLLAKLKEQGSRVLIFS 509

Query: 1074 QMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGL 1133
            QMT L+ I+EDY  +R + Y RLDG T  E+R   ++ FN P S  FIF+LSTRAGGLG+
Sbjct: 510  QMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGI 569

Query: 1134 NLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLN 1193
            NL +AD V+++DSDWNP  DLQA DRAHRIGQ+  VRV RL T N+VEE+I+  A+ KL 
Sbjct: 570  NLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLR 629

Query: 1194 VDQKVIQAG-MFDQKSSSHERRAFLQAI---LEHEEENEEEDEVPDDETLNQMIARREEE 1249
            +D  VIQ G + DQ+S+   +   LQ I     H   ++E +    DE +  ++ R E++
Sbjct: 630  LDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELT--DEDITTILERGEKK 687


>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a1 isoform a [Homo sapiens]
          Length = 1054

 Score =  440 bits (1131), Expect = e-123
 Identities = 262/672 (38%), Positives = 385/672 (57%), Gaps = 75/672 (11%)

Query: 610  EAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEV 669
            +APK+ +     EM+P YE   ++D  +      ++ E      Q + +K    P + ++
Sbjct: 71   KAPKSEK-----EMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKL 125

Query: 670  S----EKDAKQIIETA-------KQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSAL 718
                 +KD KQ + +A        +  +DE  +  S + S         +  R E   + 
Sbjct: 126  GRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSN--------VCIRFEVSPSY 177

Query: 719  LINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLI 778
            +  G L+ YQ++GL W++SLY N +NGILADEMGLGKT+QTIAL+ YL  ++ + GP+++
Sbjct: 178  VKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMV 237

Query: 779  IVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLV-PQLRSGKFNVLLTTYEYIIKDK 837
            +VP STL NW  EF +W PS+  I + G    R + +  ++  G+++V +T+YE +IK+K
Sbjct: 238  LVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEK 297

Query: 838  HILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNF 897
             +  K  W+Y+++DE HR+KN   KL++++   + +  R+LLTGTPLQN L ELWALLNF
Sbjct: 298  SVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR-EFKSTNRLLLTGTPLQNNLHELWALLNF 356

Query: 898  LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 957
            LLP +F S   F+ WF+    +  ++          ++ RLH VL+PFLLRR+K +VE  
Sbjct: 357  LLPDVFNSADDFDSWFDTKNCLGDQK----------LVERLHAVLKPFLLRRIKTDVEKS 406

Query: 958  LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICN 1017
            LP K E  I   +S +Q+  Y       IL+ D    +  GK     L+N +MQLRK CN
Sbjct: 407  LPPKKEIKIYLGLSKMQREWYTK-----ILMKDIDVLNSSGKMDKMRLLNILMQLRKCCN 461

Query: 1018 HPYMFQHIEE----SFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFC 1073
            HPY+F   E     +  EH+  SN           SGK  +LD++L KL+    RVL+F 
Sbjct: 462  HPYLFDGAEPGPPYTTDEHI-VSN-----------SGKMVVLDKLLAKLKEQGSRVLIFS 509

Query: 1074 QMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRA------------ALLKKFNEPGSQYFI 1121
            QMT L+ I+EDY  +R + Y RLDG T  E+R               ++ FN P S  FI
Sbjct: 510  QMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFI 569

Query: 1122 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1181
            F+LSTRAGGLG+NL +AD V+++DSDWNP  DLQA DRAHRIGQ+  VRV RL T N+VE
Sbjct: 570  FMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 629

Query: 1182 EKILAAAKYKLNVDQKVIQAG-MFDQKSSSHERRAFLQAI---LEHEEENEEEDEVPDDE 1237
            E+I+  A+ KL +D  VIQ G + DQ+S+   +   LQ I     H   ++E +    DE
Sbjct: 630  ERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELT--DE 687

Query: 1238 TLNQMIARREEE 1249
             +  ++ R E++
Sbjct: 688  DITTILERGEKK 699


>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a5 [Homo sapiens]
          Length = 1052

 Score =  434 bits (1115), Expect = e-121
 Identities = 244/637 (38%), Positives = 363/637 (56%), Gaps = 64/637 (10%)

Query: 632  RSDSEESDSDYEEEDEEEESSR-----QETE---------------EKILLDPNSEEVSE 671
            + + +E D  YEE+ + + ++R     ++TE                 + + P    + +
Sbjct: 70   QKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKK 129

Query: 672  KDAKQIIETA-------KQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTL 724
             + + ++          +Q+ D+E   + S          A  +  R E   + +  G L
Sbjct: 130  DEKQNLLSVGDYRHRRTEQEEDEELLTESSK---------ATNVCTRFEDSPSYVKWGKL 180

Query: 725  KHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLST 784
            + YQ++GL W++SLY N +NGILADEMGLGKT+QTI+L+ Y+  ++ + GP++++VP ST
Sbjct: 181  RDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKST 240

Query: 785  LSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAKI 843
            L NW  EF +W P++  +   G    R + V   L  G+++V +T+YE +IK+K +  K 
Sbjct: 241  LHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKF 300

Query: 844  RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF 903
             W+Y+++DE HR+KN   KL++++   +    R+LLTGTPLQN L ELW+LLNFLLP +F
Sbjct: 301  NWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF 359

Query: 904  KSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVE 963
             S   F+ WF+    +  ++          ++ RLH VLRPFLLRR+K +VE  LP K E
Sbjct: 360  NSADDFDSWFDTNNCLGDQK----------LVERLHMVLRPFLLRRIKADVEKSLPPKKE 409

Query: 964  YVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ 1023
              I   +S +Q+  Y       IL+ D    +  GK     L+N +MQLRK CNHPY+F 
Sbjct: 410  VKIYVGLSKMQREWYTR-----ILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFD 464

Query: 1024 HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIME 1083
              E        Y+  +     L   SGK  +LD++LPKL+    RVL+F QMT ++ I+E
Sbjct: 465  GAEPGPP----YTTDM----HLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILE 516

Query: 1084 DYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVI 1143
            DY  +RN+ Y RLDG T  ++R   +  +NEP S  F+F+LSTRAGGLG+NL  AD V++
Sbjct: 517  DYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVIL 576

Query: 1144 FDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAG- 1202
            +DSDWNP  DLQA DRAHRIGQ   VRV R  T N+VEE+I+  A+ KL +D  VIQ G 
Sbjct: 577  YDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636

Query: 1203 MFDQKSSSHERRAFLQAILEHEEE--NEEEDEVPDDE 1237
            + DQ  +   +   LQ I          +E E+ D++
Sbjct: 637  LVDQNLNKIGKDEMLQMIRHGATHVFASKESEITDED 673


>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
            [Homo sapiens]
          Length = 1828

 Score =  408 bits (1048), Expect = e-113
 Identities = 274/708 (38%), Positives = 387/708 (54%), Gaps = 76/708 (10%)

Query: 712  VEKQSALL--INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEH 769
            ++KQ A L   N  L+ YQL+GL W+   +  N + ILADEMGLGKTIQTI+ ++YL   
Sbjct: 470  LKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQ 529

Query: 770  KRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVP------QLRSGKF 823
             +L GP+LI+VPLSTL++W  EF+ WAP +  + Y G    R ++        Q +  KF
Sbjct: 530  HQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKF 589

Query: 824  NVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTP 883
            N L+TTYE ++KDK +L  I W ++ VDE HR+KN    L + L   + +  R+L+TGTP
Sbjct: 590  NALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTL-IDFKSNHRLLITGTP 648

Query: 884  LQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLR 943
            LQN L ELW+LL+F++P  F+    FE           E      E      + LHKVL 
Sbjct: 649  LQNSLKELWSLLHFIMPEKFEFWEDFE-----------EDHGKGRENGY---QSLHKVLE 694

Query: 944  PFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAK 1003
            PFLLRR+KK+VE  LP KVE +++ +MSALQK  Y     K IL  +     K  +G   
Sbjct: 695  PFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYY-----KWILTRNYKALAKGTRGSTS 749

Query: 1004 TLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLR 1063
              +N +M+L+K CNH Y+ +  EE+  E     NG      L R+SGK  LLD++L +LR
Sbjct: 750  GFLNIVMELKKCCNHCYLIKPPEENERE-----NGQEILLSLIRSSGKLILLDKLLTRLR 804

Query: 1064 ATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFL 1123
               +RVL+F QM  ++ I+ +Y   +++ + RLDG+ K E R   L  FN  GS+ F FL
Sbjct: 805  ERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFL 864

Query: 1124 LSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 1183
            LSTRAGGLG+NL +ADTVVIFDSDWNP  DLQAQ RAHRIGQ+ +V + RL T  +VEE+
Sbjct: 865  LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEE 924

Query: 1184 ILAAAKYKLNVDQKVIQ------AGMFDQKSSSHERRAF----LQAIL---------EHE 1224
            I+  AK K+ +D  VIQ        + +  S       F    L AIL         E E
Sbjct: 925  IIERAKKKMVLDHLVIQRMDTTGRTILENNSGRSNSNPFNKEELTAILKFGAEDLFKELE 984

Query: 1225 EENEEEDEVPDDETL-------NQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEE 1277
             E  E  E+  DE L       N++     +E     ++      ED    + +P    +
Sbjct: 985  GEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWD 1044

Query: 1278 DELPSWIIKDDAEVERLTCEEEEEKIFG----RGSRQRRDVDYSDALTEKQ---WLRAIE 1330
            + +P    K   E ER   ++E E+I+     R S ++   + SD+ TE +      +  
Sbjct: 1045 EIIPEEQRKKVEEEER---QKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQRSSAS 1101

Query: 1331 DGNLEEMEEEVRLKKRKRRRNVDKDPAK--EDVE-----KAKKRRGRP 1371
            +   E+ +++ + K+R R R+V KD  +   D E     KA K+ G P
Sbjct: 1102 ESETEDSDDDKKPKRRGRPRSVRKDLVEGFTDAEIRRFIKAYKKFGLP 1149



 Score = 35.8 bits (81), Expect = 0.34
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 1482 KSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRP- 1540
            +  RQ   +E+  ++ S +E+E+    ESE E K VK +  + ++      K + KK+P 
Sbjct: 140  RGQRQLKKQEKWKQEPSEDEQEQGTSAESEPEQKKVKARRPVPRRT---VPKPRVKKQPK 196

Query: 1541 -NRGKAKPVVSDFDSDEEQDE 1560
              RGK K   S  D D++ DE
Sbjct: 197  TQRGKRKKQDSS-DEDDDDDE 216



 Score = 32.0 bits (71), Expect = 4.8
 Identities = 62/298 (20%), Positives = 118/298 (39%), Gaps = 32/298 (10%)

Query: 449  QEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMA 508
            Q  + SI+QH ++F+  H+S+    ++  K   T      +    + E   ++  R L+ 
Sbjct: 1216 QVNVKSIIQHEEEFEMLHKSIPVDPEEKKKYCLTCRV---KAAHFDVEWGVEDDSRLLLG 1272

Query: 509  EDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEE 568
              E GY      K D      L+ TD+ +   T+   + KQ Q   +   +  RK   ++
Sbjct: 1273 IYEHGYGNWELIKTDPE----LKLTDKILPVETDKKPQGKQLQTRADYLLKLLRKGLEKK 1328

Query: 569  NA-EGGESALGPDGEP-IDESSQMSDLPVKVTHTETGKVLFGPE-----APKASQLDAWL 621
             A  GGE A     +P + + +++  L       E G  L  P      + +    D  L
Sbjct: 1329 GAVTGGEEAKLKKRKPRVKKENKVPRL-----KEEHGIELSSPRHSDNPSEEGEVKDDGL 1383

Query: 622  EMNPGYEVAPRSDSEE------SDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAK 675
            E +P  +   + +++E      S    +E D+E + S+ + E+    D  S   S++   
Sbjct: 1384 EKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQG 1443

Query: 676  QIIETA-------KQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKH 726
             +  TA        +D DD+   +  +   +    V  A+ +  +    L +   L+H
Sbjct: 1444 PVHITAGSEPVPIGEDEDDDLDQETFSICKERMRPVKKALKQLDKPDKGLNVQEQLEH 1501



 Score = 31.6 bits (70), Expect = 6.3
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 1485 RQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNR-- 1542
            ++K  K+E  E++  +    +D+E  +   KS   K K    D K   K K  + P    
Sbjct: 1389 KKKQKKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQGPVHIT 1448

Query: 1543 GKAKPVVSDFDSDEEQDE 1560
              ++PV    D D++ D+
Sbjct: 1449 AGSEPVPIGEDEDDDLDQ 1466


>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
            [Homo sapiens]
          Length = 2000

 Score =  402 bits (1033), Expect = e-111
 Identities = 306/982 (31%), Positives = 462/982 (47%), Gaps = 128/982 (13%)

Query: 632  RSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSM 691
            +S  EE + +  E +E ++S  +  E  +  DP      +K  K++              
Sbjct: 660  QSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKEL-------------- 705

Query: 692  QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEM 751
                 G  S  T    +    + +      GTL  YQL+GL W+   +    + ILADEM
Sbjct: 706  --QGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEM 763

Query: 752  GLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMR 811
            GLGKTIQTI  +  L +     GP+L+  PLST+ NW  EF  WAP    ++Y G    R
Sbjct: 764  GLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSR 823

Query: 812  RSLVPQ--------LRSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVD 851
              +           ++ GK            F+VLLT+YE I  D+  L  IRW  ++VD
Sbjct: 824  AIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD 883

Query: 852  EGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQ 911
            E HR+KN+  K  +VLN  Y    ++LLTGTPLQN L EL+ LLNFL P  F +   F +
Sbjct: 884  EAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLE 942

Query: 912  WFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMS 971
             F           D+++E+ I   ++LH +L P +LRRLK +V   +P K E +++ ++S
Sbjct: 943  EF----------ADISKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS 989

Query: 972  ALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAE 1031
             +QK  Y++     IL  +    + +G G   +L+N +M L+K CNHPY+F     +  E
Sbjct: 990  PMQKKYYKY-----ILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAME 1041

Query: 1032 HLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNF 1091
                 +G   G  L ++SGK  LL ++L KL+   HRVL+F QMT ++ ++ED+  +  +
Sbjct: 1042 SPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGY 1101

Query: 1092 LYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPH 1151
             Y R+DG      R   + +FN PG+Q F FLLSTRAGGLG+NL  ADTV+IFDSDWNPH
Sbjct: 1102 KYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPH 1161

Query: 1152 QDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSH 1211
             D+QA  RAHRIGQ N+V + R  T  SVEE+I   AK K+ +   V++ G+  +  S  
Sbjct: 1162 NDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMS 1221

Query: 1212 ERRAFLQAIL----------EHEEENEEEDEVP---DDETLNQMIARREEEFDLFMRMDM 1258
            ++   L  IL          E+E EN+EED      D+E + +++ R +   D     D+
Sbjct: 1222 KQE--LDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDV 1276

Query: 1259 DRRREDARNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKI--- 1303
                E   + K    ++ E    +E+   IIK +  V+        R   E+++E +   
Sbjct: 1277 QNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN 1336

Query: 1304 FGRGSRQRRDVDYSDALTEKQWLRA-------IEDGNLEEMEEEVRLKKRKRRRNVDK-- 1354
             G+G R R+ V+Y+DA  E Q  ++        ED + +E  E  R  KR+ R   DK  
Sbjct: 1337 LGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPL 1396

Query: 1355 -----------------DPAKEDVEKAKKRRGRPPAEKLSPN------PPKLTKQMNAII 1391
                                ++    A  R G PP +  +          K  K+  A +
Sbjct: 1397 PPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYV 1456

Query: 1392 DTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLGD 1448
               + +    G   SE F     R+ L     L R  V     KK++E    +   S+ +
Sbjct: 1457 SLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPE 1516

Query: 1449 LEKDVMLLCHNAQTFN--LEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEED 1506
            L  D       +   +   + S    ++    S   S     A  E+ E      E+EE 
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEA 1576

Query: 1507 EEESESEAKSVKVKIKLNKKDD 1528
            E + E   K+ ++  K+  + D
Sbjct: 1577 ENQEEKPEKNSRIGEKMETEAD 1598


>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
            [Homo sapiens]
          Length = 1966

 Score =  402 bits (1033), Expect = e-111
 Identities = 306/982 (31%), Positives = 462/982 (47%), Gaps = 128/982 (13%)

Query: 632  RSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSM 691
            +S  EE + +  E +E ++S  +  E  +  DP      +K  K++              
Sbjct: 660  QSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKEL-------------- 705

Query: 692  QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEM 751
                 G  S  T    +    + +      GTL  YQL+GL W+   +    + ILADEM
Sbjct: 706  --QGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEM 763

Query: 752  GLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMR 811
            GLGKTIQTI  +  L +     GP+L+  PLST+ NW  EF  WAP    ++Y G    R
Sbjct: 764  GLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSR 823

Query: 812  RSLVPQ--------LRSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVD 851
              +           ++ GK            F+VLLT+YE I  D+  L  IRW  ++VD
Sbjct: 824  AIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD 883

Query: 852  EGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQ 911
            E HR+KN+  K  +VLN  Y    ++LLTGTPLQN L EL+ LLNFL P  F +   F +
Sbjct: 884  EAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLE 942

Query: 912  WFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMS 971
             F           D+++E+ I   ++LH +L P +LRRLK +V   +P K E +++ ++S
Sbjct: 943  EF----------ADISKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS 989

Query: 972  ALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAE 1031
             +QK  Y++     IL  +    + +G G   +L+N +M L+K CNHPY+F     +  E
Sbjct: 990  PMQKKYYKY-----ILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAME 1041

Query: 1032 HLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNF 1091
                 +G   G  L ++SGK  LL ++L KL+   HRVL+F QMT ++ ++ED+  +  +
Sbjct: 1042 SPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGY 1101

Query: 1092 LYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPH 1151
             Y R+DG      R   + +FN PG+Q F FLLSTRAGGLG+NL  ADTV+IFDSDWNPH
Sbjct: 1102 KYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPH 1161

Query: 1152 QDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSH 1211
             D+QA  RAHRIGQ N+V + R  T  SVEE+I   AK K+ +   V++ G+  +  S  
Sbjct: 1162 NDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMS 1221

Query: 1212 ERRAFLQAIL----------EHEEENEEEDEVP---DDETLNQMIARREEEFDLFMRMDM 1258
            ++   L  IL          E+E EN+EED      D+E + +++ R +   D     D+
Sbjct: 1222 KQE--LDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDV 1276

Query: 1259 DRRREDARNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKI--- 1303
                E   + K    ++ E    +E+   IIK +  V+        R   E+++E +   
Sbjct: 1277 QNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN 1336

Query: 1304 FGRGSRQRRDVDYSDALTEKQWLRA-------IEDGNLEEMEEEVRLKKRKRRRNVDK-- 1354
             G+G R R+ V+Y+DA  E Q  ++        ED + +E  E  R  KR+ R   DK  
Sbjct: 1337 LGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPL 1396

Query: 1355 -----------------DPAKEDVEKAKKRRGRPPAEKLSPN------PPKLTKQMNAII 1391
                                ++    A  R G PP +  +          K  K+  A +
Sbjct: 1397 PPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYV 1456

Query: 1392 DTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLGD 1448
               + +    G   SE F     R+ L     L R  V     KK++E    +   S+ +
Sbjct: 1457 SLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPE 1516

Query: 1449 LEKDVMLLCHNAQTFN--LEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEED 1506
            L  D       +   +   + S    ++    S   S     A  E+ E      E+EE 
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEA 1576

Query: 1507 EEESESEAKSVKVKIKLNKKDD 1528
            E + E   K+ ++  K+  + D
Sbjct: 1577 ENQEEKPEKNSRIGEKMETEAD 1598


>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
            [Homo sapiens]
          Length = 2059

 Score =  402 bits (1033), Expect = e-111
 Identities = 306/982 (31%), Positives = 462/982 (47%), Gaps = 128/982 (13%)

Query: 632  RSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSM 691
            +S  EE + +  E +E ++S  +  E  +  DP      +K  K++              
Sbjct: 719  QSTWEEDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKEL-------------- 764

Query: 692  QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEM 751
                 G  S  T    +    + +      GTL  YQL+GL W+   +    + ILADEM
Sbjct: 765  --QGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEM 822

Query: 752  GLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMR 811
            GLGKTIQTI  +  L +     GP+L+  PLST+ NW  EF  WAP    ++Y G    R
Sbjct: 823  GLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSR 882

Query: 812  RSLVPQ--------LRSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVD 851
              +           ++ GK            F+VLLT+YE I  D+  L  IRW  ++VD
Sbjct: 883  AIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVD 942

Query: 852  EGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQ 911
            E HR+KN+  K  +VLN  Y    ++LLTGTPLQN L EL+ LLNFL P  F +   F +
Sbjct: 943  EAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLE 1001

Query: 912  WFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMS 971
             F           D+++E+ I   ++LH +L P +LRRLK +V   +P K E +++ ++S
Sbjct: 1002 EF----------ADISKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS 1048

Query: 972  ALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAE 1031
             +QK  Y++     IL  +    + +G G   +L+N +M L+K CNHPY+F     +  E
Sbjct: 1049 PMQKKYYKY-----ILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAME 1100

Query: 1032 HLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNF 1091
                 +G   G  L ++SGK  LL ++L KL+   HRVL+F QMT ++ ++ED+  +  +
Sbjct: 1101 SPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGY 1160

Query: 1092 LYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPH 1151
             Y R+DG      R   + +FN PG+Q F FLLSTRAGGLG+NL  ADTV+IFDSDWNPH
Sbjct: 1161 KYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPH 1220

Query: 1152 QDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSH 1211
             D+QA  RAHRIGQ N+V + R  T  SVEE+I   AK K+ +   V++ G+  +  S  
Sbjct: 1221 NDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMS 1280

Query: 1212 ERRAFLQAIL----------EHEEENEEEDEVP---DDETLNQMIARREEEFDLFMRMDM 1258
            ++   L  IL          E+E EN+EED      D+E + +++ R +   D     D+
Sbjct: 1281 KQE--LDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDV 1335

Query: 1259 DRRREDARNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKI--- 1303
                E   + K    ++ E    +E+   IIK +  V+        R   E+++E +   
Sbjct: 1336 QNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN 1395

Query: 1304 FGRGSRQRRDVDYSDALTEKQWLRA-------IEDGNLEEMEEEVRLKKRKRRRNVDK-- 1354
             G+G R R+ V+Y+DA  E Q  ++        ED + +E  E  R  KR+ R   DK  
Sbjct: 1396 LGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPL 1455

Query: 1355 -----------------DPAKEDVEKAKKRRGRPPAEKLSPN------PPKLTKQMNAII 1391
                                ++    A  R G PP +  +          K  K+  A +
Sbjct: 1456 PPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYV 1515

Query: 1392 DTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLGD 1448
               + +    G   SE F     R+ L     L R  V     KK++E    +   S+ +
Sbjct: 1516 SLFMRHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPE 1575

Query: 1449 LEKDVMLLCHNAQTFN--LEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEED 1506
            L  D       +   +   + S    ++    S   S     A  E+ E      E+EE 
Sbjct: 1576 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEA 1635

Query: 1507 EEESESEAKSVKVKIKLNKKDD 1528
            E + E   K+ ++  K+  + D
Sbjct: 1636 ENQEEKPEKNSRIGEKMETEAD 1657



 Score = 37.7 bits (86), Expect = 0.088
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 8/59 (13%)

Query: 1490 KEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDD--------KGRDKGKGKKRP 1540
            +EEE E   +EEEEEE+EE  E E + V+   + +++DD         G D+G+ +  P
Sbjct: 9    EEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGVLGRGPGHDRGRDRHSP 67



 Score = 33.5 bits (75), Expect = 1.7
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 8/51 (15%)

Query: 1488 IAKEEESEDESNEEEEEE-----DEEESESEAKSVKVKIKLNKKDDKGRDK 1533
            +++EEE E+E  +EEEEE     DE++ E + + V   +      D+GRD+
Sbjct: 17   VSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGV---LGRGPGHDRGRDR 64



 Score = 32.0 bits (71), Expect = 4.8
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 630 APRSDSEESDSDY----EEEDEEEESSRQETEEKILLDPNSEE 668
           +P  D EE + +     EEE+EEEE   +E EE    D + EE
Sbjct: 3   SPLRDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEE 45



 Score = 32.0 bits (71), Expect = 4.8
 Identities = 15/57 (26%), Positives = 30/57 (52%)

Query: 1490 KEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAK 1546
            ++EE E+E     EEE+EEE E + +  +     ++ D++  D+G   + P   + +
Sbjct: 6    RDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGVLGRGPGHDRGR 62


>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
            sapiens]
          Length = 1912

 Score =  392 bits (1008), Expect = e-108
 Identities = 304/975 (31%), Positives = 462/975 (47%), Gaps = 158/975 (16%)

Query: 722  GTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVP 781
            GTL  YQ++GL W+   +    + ILADEMGLGKT+QT   +  L +     GP+L+  P
Sbjct: 724  GTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAP 783

Query: 782  LSTLSNWTYEFDKWAPSVVKISYKGTPAMRR--------------------SLVPQLRSG 821
            LST+ NW  EF+ WAP +  ++Y G    R                     S + +  S 
Sbjct: 784  LSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASV 843

Query: 822  KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTG 881
            KF+VLLT+YE I  D  IL  I W  +IVDE HR+KN+  K  +VLN  Y    ++LLTG
Sbjct: 844  KFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNG-YSLQHKLLLTG 902

Query: 882  TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 941
            TPLQN L EL+ LLNFL P  F +   F + F           D+ +E+ I   ++LH +
Sbjct: 903  TPLQNNLEELFHLLNFLTPERFHNLEGFLEEF----------ADIAKEDQI---KKLHDM 949

Query: 942  LRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGG 1001
            L P +LRRLK +V   +P K E +++ ++S +QK  Y++     IL  +    + +G G 
Sbjct: 950  LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKY-----ILTRNFEALNARGGGN 1004

Query: 1002 AKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPK 1061
              +L+N +M L+K CNHPY+F     +  E     NG+ +G+ L RASGK  LL ++L  
Sbjct: 1005 QVSLLNVVMDLKKCCNHPYLFP---VAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKN 1061

Query: 1062 LRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFI 1121
            L+   HRVL+F QMT ++ ++ED+     + Y R+DG      R   + +FN PG+Q F 
Sbjct: 1062 LKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFC 1121

Query: 1122 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1181
            FLLSTRAGGLG+NL  ADTV+I+DSDWNPH D+QA  RAHRIGQ  +V + R  T  SVE
Sbjct: 1122 FLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1181

Query: 1182 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP------- 1234
            E+I   AK K+ +   V++ G+  +  S  ++   L  IL+   E   +DE         
Sbjct: 1182 ERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQE--LDDILKFGTEELFKDEATDGGGDNK 1239

Query: 1235 ----------DDETLNQMIARREEEFDLFMRMDMDRRRED---ARNPKRKPRLMEEDELP 1281
                      DD+ + +++ R ++E +      M+        A+   R+  + EE+E+ 
Sbjct: 1240 EGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVE 1299

Query: 1282 SWIIKDDAEVE--------RLTCEEEEEKI---FGRGSRQRRDVDYSDALTE-KQWLR-- 1327
              IIK +  V+        R   E+++E +    G+G R R+ V+Y+D   E + W    
Sbjct: 1300 REIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQEDRDWQDDQ 1359

Query: 1328 ---------AIEDG--NLEEMEEEVRLKKRKRRRNVDKDP-------------------- 1356
                     A E+G  + +E  E  R   RK  RN DKD                     
Sbjct: 1360 SDNQSDYSVASEEGDEDFDERSEAPRRPSRKGLRN-DKDKPLPPLLARVGGNIEVLGFNA 1418

Query: 1357 -AKEDVEKAKKRRGRPPAEKLSPN------PPKLTKQMNAIIDTVINYKDSSGRQLSEVF 1409
              ++    A  R G PP +  +          K  K+  A +   + +    G   +E F
Sbjct: 1419 RQRKAFLNAIMRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYVSLFMRHLCEPGADGAETF 1478

Query: 1410 IQLPSRKELPEYY--------ELIRKPV-DFKKIKER--------IRNHKYRSL------ 1446
                 R+ L   +         LIRK V +F+ +  R        +  +K  S       
Sbjct: 1479 ADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPELAEVEENKKMSQPGSPSP 1538

Query: 1447 --------GDLEKDVMLLCHNAQT-FNLEGSQI-YEDSIVLQSVFKSARQKIAKEEESED 1496
                    GD + +       A+    +E + +  E+SI  +   KS   + A E     
Sbjct: 1539 KTPTPSTPGDTQPNTPAPVPPAEDGIKIEENSLKEEESIEGEKEVKSTAPETAIECTQAP 1598

Query: 1497 ESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAK------PVVS 1550
                E+E+   E  E E K  K ++K  + ++    + KG     + + K      P+V 
Sbjct: 1599 APASEDEKVVVEPPEGEEKVEKAEVK-ERTEEPMETEPKGAADVEKVEEKSAIDLTPIVV 1657

Query: 1551 DFDSDEEQDEREQSE 1565
            + D +E+++E E+ E
Sbjct: 1658 E-DKEEKKEEEEKKE 1671



 Score = 38.5 bits (88), Expect = 0.052
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%)

Query: 1432 KKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDS--IVLQSVF-------- 1481
            KK  ++ R+ K       +K+ MLLC      + EG +  E+   + L+S          
Sbjct: 54   KKKPKKPRDPKIPKSKRQKKERMLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPG 113

Query: 1482 KSARQKIA--KEEESEDESNEEEEEEDEEESESEAKS 1516
            K  ++K+   KE++S+ +  EEEEEED+++   E KS
Sbjct: 114  KKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSKEPKS 150



 Score = 34.3 bits (77), Expect = 0.97
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 1479 SVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKL-NKKDDKGRDKGKGK 1537
            S FK A+  + +EE  E+E  E E  + EE  + +     ++     +++D  R+ GKGK
Sbjct: 1278 SSFKVAQYVVREEEMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGK 1337

Query: 1538 ---KRPNRGKAKPVVSDFDSDEEQDEREQSEGSGTDDE 1572
               K+ N         D+  D+  ++ + S  S   DE
Sbjct: 1338 RIRKQVNYNDGSQEDRDWQDDQSDNQSDYSVASEEGDE 1375



 Score = 31.2 bits (69), Expect = 8.3
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 4/123 (3%)

Query: 228  QQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRP 287
            ++ ++  Q   P  + P P T    QP       P+  G ++   S  ++  +       
Sbjct: 1525 EENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGIKIEENSLKEEESIEGEKEVK 1584

Query: 288  SPAPPAA---AQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQ-KPQGLDPVEIL 343
            S AP  A    Q PA A     V    P     V + + K+    P++ +P+G   VE +
Sbjct: 1585 STAPETAIECTQAPAPASEDEKVVVEPPEGEEKVEKAEVKERTEEPMETEPKGAADVEKV 1644

Query: 344  QER 346
            +E+
Sbjct: 1645 EEK 1647


>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
            sapiens]
          Length = 1710

 Score =  392 bits (1007), Expect = e-108
 Identities = 265/695 (38%), Positives = 359/695 (51%), Gaps = 78/695 (11%)

Query: 724  LKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLS 783
            L+ YQL GL W+   +    + ILADEMGLGKTIQTI+ + YL    +L GP+L++VPLS
Sbjct: 481  LRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLS 540

Query: 784  TLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVP------QLRSGKFNVLLTTYEYIIKDK 837
            TL++W  E   WA  +  + Y G    R  +        Q +  KFN+LLTTYE ++KDK
Sbjct: 541  TLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILLTTYEILLKDK 600

Query: 838  HILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNF 897
              L  + W ++ VDE HR+KN    L + L   + +  R+L+TGTPLQN L ELW+LL+F
Sbjct: 601  AFLGGLNWAFIGVDEAHRLKNDDSLLYKTL-IDFKSNHRLLITGTPLQNSLKELWSLLHF 659

Query: 898  LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 957
            ++P  F S   FE+         G                LHK L PFLLRR+KK+VE  
Sbjct: 660  IMPEKFSSWEDFEEEHGK-----GREYGYAS---------LHKELEPFLLRRVKKDVEKS 705

Query: 958  LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICN 1017
            LP KVE +++ +MSALQK  Y     K IL  +     K  KG     +N +M+L+K CN
Sbjct: 706  LPAKVEQILRMEMSALQKQYY-----KWILTRNYKALSKGSKGSTSGFLNIMMELKKCCN 760

Query: 1018 HPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTS 1077
            H Y+ +  + +      + N       L R+SGK  LLD++L +LR   +RVL+F QM  
Sbjct: 761  HCYLIKPPDNN-----EFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVR 815

Query: 1078 LMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA 1137
            ++ I+ +Y  +R F + RLDG+ K E R   L  FN  GS+ F FLLSTRAGGLG+NL +
Sbjct: 816  MLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLAS 875

Query: 1138 ADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQK 1197
            ADTVVIFDSDWNP  DLQAQ RAHRIGQ+ +V + RL T  SVEE IL  AK K+ +D  
Sbjct: 876  ADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHL 935

Query: 1198 VIQAGMFDQK----------SSSHERRAFLQAIL---------EHEEENEEEDEVPDDET 1238
            VIQ      K          SS+   +  L AIL         E E E +E  E+  DE 
Sbjct: 936  VIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEI 995

Query: 1239 LNQMIARREEEFDL--------------FMRMDMDR-RREDARNPKRKPRLMEEDELPSW 1283
            L +      E   L              F  MD D    E  RN K    ++ ED+    
Sbjct: 996  LKRAETHENEPGPLTVGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPEDQ---- 1051

Query: 1284 IIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRL 1343
              +   E E    E EE  +  R     + + ++ +   +   R     + + + E  R 
Sbjct: 1052 --RRRLEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISEGKRP 1109

Query: 1344 KKRKRRRNVDKDPAK--EDVE-----KAKKRRGRP 1371
            KKR R R + ++  K   D E     K+ K+ G P
Sbjct: 1110 KKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGP 1144



 Score = 38.5 bits (88), Expect = 0.052
 Identities = 33/168 (19%), Positives = 78/168 (46%), Gaps = 12/168 (7%)

Query: 549 QAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFG 608
           Q  A  +K+++++++++ + ++  G        E  D+SS  S++  K  H +    + G
Sbjct: 97  QRSAILKKQQQQQQQQQHQASSNSGSEEDSSSSEDSDDSS--SEVKRK-KHKDEDWQMSG 153

Query: 609 PEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEE 668
             +P  S  D+  E     E   +S  +E++SDYE +++ +    Q   +      N ++
Sbjct: 154 SGSPSQSGSDSESE-----EEREKSSCDETESDYEPKNKVKSRKPQNRSKS----KNGKK 204

Query: 669 VSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQS 716
           +  +  +QI  + + D +++Y     +   Q+   V++   E ++  S
Sbjct: 205 ILGQKKRQIDSSEEDDDEEDYDNDKRSSRRQATVNVSYKEDEEMKTDS 252



 Score = 35.0 bits (79), Expect = 0.57
 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 19/114 (16%)

Query: 1465 LEGSQIYEDSIVLQSVFKSA------RQKIAKEEESEDESNEEEEEEDEEESESEAKSVK 1518
            ++G++ ++ S  + +V +SA      +Q+  ++ ++   S  EE+    E+S+  +  VK
Sbjct: 81   VDGAEFWKSSPSILAVQRSAILKKQQQQQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVK 140

Query: 1519 VKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDEREQSEGSGTDDE 1572
                        R K K +     G   P  S  DS E ++ERE+S    T+ +
Sbjct: 141  ------------RKKHKDEDWQMSGSGSPSQSGSDS-ESEEEREKSSCDETESD 181



 Score = 34.3 bits (77), Expect = 0.97
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 1492 EESEDESNEEEEEE---DEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPV 1548
            +   D  +EEE E+   DE ES+ E K+   K+K  K  ++ + K  GKK   + K +  
Sbjct: 159  QSGSDSESEEEREKSSCDETESDYEPKN---KVKSRKPQNRSKSK-NGKKILGQKKRQID 214

Query: 1549 VSDFDSDEEQDEREQ 1563
             S+ D DEE  + ++
Sbjct: 215  SSEEDDDEEDYDNDK 229



 Score = 33.9 bits (76), Expect = 1.3
 Identities = 26/134 (19%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 552 AAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEA 611
           ++ E K+++ + +  + +  G  S  G D E  +E  + S    +  +    KV      
Sbjct: 135 SSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDETESDYEPKNKVKSRKPQ 194

Query: 612 PKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSE 671
            ++   +    +    +   + DS E D D E+ D ++ SSR++    + +    +E  +
Sbjct: 195 NRSKSKNGKKILG---QKKRQIDSSEEDDDEEDYDNDKRSSRRQA--TVNVSYKEDEEMK 249

Query: 672 KDAKQIIETAKQDV 685
            D+  ++E   +DV
Sbjct: 250 TDSDDLLEVCGEDV 263



 Score = 32.7 bits (73), Expect = 2.8
 Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 11/104 (10%)

Query: 1466 EGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNK 1525
            E S   EDS    S  K  + K    +E    S      +   +SESE +  K      +
Sbjct: 124  EDSSSSEDSDDSSSEVKRKKHK----DEDWQMSGSGSPSQSGSDSESEEEREKSSCDETE 179

Query: 1526 KDDKGRDKGKGKKRPNRGKAK-------PVVSDFDSDEEQDERE 1562
             D + ++K K +K  NR K+K             DS EE D+ E
Sbjct: 180  SDYEPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDSSEEDDDEE 223


>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
            sapiens]
          Length = 2997

 Score =  390 bits (1003), Expect = e-108
 Identities = 359/1269 (28%), Positives = 559/1269 (44%), Gaps = 228/1269 (17%)

Query: 70   MHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLG 129
            MHQ      G  ++   + +H    +GT   PP      P SPM   S        +P G
Sbjct: 362  MHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPP------PMSPMKAMS--------NPAG 407

Query: 130  APEHVSSPMSGGGPTP----PQMPPSQPGALIPGDPQAMSQPNRGPS------PFSPVQL 179
             P     P S G P      P MP  QP    PG    + Q N GP       PF  +  
Sbjct: 408  TPPPQVRPGSAGIPMEVGSYPNMPHPQPSHQPPG-AMGIGQRNMGPRNMQQSRPFIGMSS 466

Query: 180  --HQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQ 237
               +L   +        G   P+ +Q     +R +PG  QQ   QQ   QQ       Q 
Sbjct: 467  APRELTGHMRPNGCPGVGLGDPQAIQ-----ERLIPG--QQHPGQQPSFQQLPTCPPLQP 519

Query: 238  QP----QQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPA 293
             P    Q  PP P  Q   Q           P P+    +TPQK+PV     + SP+ P 
Sbjct: 520  HPGLHHQSSPPHPHHQPWAQ---------LHPSPQ----NTPQKVPVH----QHSPSEPF 562

Query: 294  AAQP--PAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQK----------------PQ 335
              +P      V GP+          P ++ Q +Q +                      P 
Sbjct: 563  LEKPVPDMTQVSGPNAQLVKSDDYLPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPG 622

Query: 336  GLDPVEI----LQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQ 391
            G+D  E+    L   +   + +   + ++    P         K     KA ++    ++
Sbjct: 623  GVDNQELNRNSLDGSQEEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKE 682

Query: 392  LRQEVVA----CMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQK---------- 437
             + +         ++ +  +    + A K+   +   E      L+K             
Sbjct: 683  KKAKTATPKPKSSKKSSNKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDED 742

Query: 438  --IEQERKRRQ-KHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKE 494
              +++ R  RQ K + Y   +     D +      AG+            +NT + +++E
Sbjct: 743  PGVQKRRSSRQVKRKRYTEDLEFKISDEEADDADAAGRDSP---------SNTSQSEQQE 793

Query: 495  TERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAK 554
            +   E   + ++M+      R +  QK+         + +E+     N  + H Q  + +
Sbjct: 794  SVDAEGPVVEKIMSS-----RSVKKQKESGEEV----EIEEFYVKYKNFSYLHCQWASIE 844

Query: 555  --EKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEA- 611
              EK KR ++K K  +  +G    L          S++ D      + E  +++    + 
Sbjct: 845  DLEKDKRIQQKIKRFKAKQGQNKFL----------SEIEDELFNPDYVEVDRIMDFARST 894

Query: 612  -----PKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNS 666
                 P    L  W  +   YE          DS +E   + +++  +E E+ +  +P +
Sbjct: 895  DDRGEPVTHYLVKWCSLP--YE----------DSTWERRQDIDQAKIEEFEKLMSREPET 942

Query: 667  EEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKH 726
            E V    A            D++    S+R  ++                    N  L+ 
Sbjct: 943  ERVERPPA------------DDWKKSESSREYKN--------------------NNKLRE 970

Query: 727  YQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLS 786
            YQL+G+ W++  + N  N ILADEMGLGKTIQ+I  + Y +  K ++GP+L+I PLST+ 
Sbjct: 971  YQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLSTIP 1029

Query: 787  NWTYEFDKWAPSVVKISYKGTPAMRRSLV--------PQLR----SGKFNVLLTTYEYII 834
            NW  EF  W    V + Y G+ A RR++         PQ R    S KF+ ++TT+E I+
Sbjct: 1030 NWEREFRTWTELNVVV-YHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMIL 1088

Query: 835  KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL 894
             D   L  I W+ +++DE HR+KN +CKL + L    +   ++LLTGTPLQN + EL++L
Sbjct: 1089 TDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLE-HKVLLTGTPLQNTVEELFSL 1147

Query: 895  LNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV 954
            L+FL P+ F S +TF Q F           DL  EE +   ++L  +L+P +LRRLK++V
Sbjct: 1148 LHFLEPSRFPSETTFMQEFG----------DLKTEEQV---QKLQAILKPMMLRRLKEDV 1194

Query: 955  ESQLPEKVEYVIKCDMSALQKILYRHMQAKGI-LLTDGSEKDKKGKGGAKTLMNTIMQLR 1013
            E  L  K E +I+ +++ +QK  YR +  K    L+ G      G+     L+NT+M+LR
Sbjct: 1195 EKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGG-----GQANVPNLLNTMMELR 1249

Query: 1014 KICNHPYMFQHIEESFAEHLGYSNGVING----AELYRASGKFELLDRILPKLRATNHRV 1069
            K CNHPY+    EE   E    ++   +       + +A+GK  L+D++LPKL+A  HRV
Sbjct: 1250 KCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRV 1309

Query: 1070 LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAG 1129
            L+F QM   + I+EDY   R + Y R+DG  +   R A + +F++P S  F+FLL TRAG
Sbjct: 1310 LIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAG 1369

Query: 1130 GLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK 1189
            GLG+NL AADT +IFDSDWNP  DLQAQ R HRIGQ   V++ RL T NS E ++   A 
Sbjct: 1370 GLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKAS 1429

Query: 1190 YKLNVDQKVIQ-------AGMFDQKSSSHE-----RRAFLQAILEHEEENEEEDEVPDDE 1237
             KL +D+ V+Q       A    Q+ S  E     R+    A+++ E+E  +  E    E
Sbjct: 1430 LKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCE----E 1485

Query: 1238 TLNQMIARR 1246
             ++Q++ RR
Sbjct: 1486 DIDQILLRR 1494



 Score = 59.3 bits (142), Expect = 3e-08
 Identities = 54/274 (19%), Positives = 105/274 (38%), Gaps = 28/274 (10%)

Query: 1   MSTPTDPGAMPHPGPSPGPGPSPGPILG----PSPGPGPSPGSVHSMMGPSPGPPSVSHP 56
           M   ++P   P P   PG    P  +      P P P   P     +   + GP ++   
Sbjct: 399 MKAMSNPAGTPPPQVRPGSAGIPMEVGSYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQS 458

Query: 57  MPTMGSTDFPQEGMHQMHK---PIDGIHDKGIVEDIHCGSMKGTGMRP------------ 101
            P +G +  P+E    M     P  G+ D   +++      +  G +P            
Sbjct: 459 RPFIGMSSAPRELTGHMRPNGCPGVGLGDPQAIQERLIPGQQHPGQQPSFQQLPTCPPLQ 518

Query: 102 PHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDP 161
           PHPG+    SP   H Q +   HPSP   P+ V  P+    P+ P +    P       P
Sbjct: 519 PHPGLHHQSSPPHPHHQPWAQLHPSPQNTPQKV--PVHQHSPSEPFLEKPVPDMTQVSGP 576

Query: 162 QAMSQPNRGPSPFSPVQLHQLRAQILAYKMLARG-------QPLPETLQLAVQGKRTLPG 214
            A    +    P    Q  Q + +     ++A            P  +      + +L G
Sbjct: 577 NAQLVKSDDYLPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDG 636

Query: 215 LQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQT 248
            Q++++++++ + ++  ++ ++ + +++P +P+T
Sbjct: 637 SQEEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKT 670



 Score = 38.5 bits (88), Expect = 0.052
 Identities = 58/271 (21%), Positives = 92/271 (33%), Gaps = 50/271 (18%)

Query: 51  PSVSHPMPTMGST---------DFPQEGMHQMHKPI--------DGI-------HDKGIV 86
           PS+ HP      T          + Q+ MH M +P         +G+       H   + 
Sbjct: 52  PSLHHPSTNQNQTKLTHFDHYNQYEQQKMHLMDQPNRMMSNTPGNGLASPHSQYHTPPVP 111

Query: 87  EDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPH----PSPLGAPEHVSSPMSGGG 142
           +  H GS  G G    +PGM       ++H Q ++       P  +  P+ + +P     
Sbjct: 112 QVPHGGS--GGGQMGVYPGM-----QNERHGQSFVDSSSMWGPRAVQVPDQIRAPYQQQQ 164

Query: 143 PTPPQMPPSQPGALIPGDPQAMSQPN--RGPSPFSPVQLHQLRAQILAYKM----LARGQ 196
           P P    P+  G    G PQ M Q         FS  Q  Q + ++  +      L +G 
Sbjct: 165 PQPQPPQPAPSGPPAQGHPQHMQQMGSYMARGDFSMQQHGQPQQRMSQFSQGQEGLNQGN 224

Query: 197 PLPET------LQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQ 250
           P   T        +  Q     P L+   QQ           +     P+  P  PQ Q 
Sbjct: 225 PFIATSGPGHLSHVPQQSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQ-QG 283

Query: 251 QQQPALVNYNRPSG--PGPELSGPSTPQKLP 279
             +P  +N++  S   P P ++      + P
Sbjct: 284 AVRPQTLNFSSRSQTVPSPTINNSGQYSRYP 314



 Score = 37.4 bits (85), Expect = 0.12
 Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 23/118 (19%)

Query: 519  DQKKDRRLAYLLQQTDEYVANLTNLVWEHKQA-----QAAKEKKKRRRRKKKAEENAEGG 573
            D  K++ L   L+    Y  ++ + V ++        Q  K+K+ R R   K + N   G
Sbjct: 2584 DAPKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPNKLDINTLTG 2643

Query: 574  ESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAP 631
            E                    V V +   GK + G  AP    L  WLE NP + VAP
Sbjct: 2644 EER------------------VPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAP 2683



 Score = 34.7 bits (78), Expect = 0.75
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 15/92 (16%)

Query: 1298 EEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPA 1357
            E+  K FG+        D+   +  ++  R   DG+ EE       KK+K+R    KDP 
Sbjct: 609  EDPSKGFGKD-------DFPGGVDNQELNRNSLDGSQEE-------KKKKKRSKAKKDP- 653

Query: 1358 KEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNA 1389
            KE  E  +K+  + P    +P  PK  K+  A
Sbjct: 654  KEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKA 685



 Score = 34.3 bits (77), Expect = 0.97
 Identities = 84/413 (20%), Positives = 144/413 (34%), Gaps = 85/413 (20%)

Query: 1208 SSSHERRAFLQAILEHEEENEEEDEV--PDDETLNQMIAR---------REEEFDLFMRM 1256
            S   E    + A  +H E N E  ++  P+  TL   + R         + ++      M
Sbjct: 1876 SEDKEESMEIHATGKHSESNAELGQLYWPNTSTLTTRLRRLITAYQRSYKRQQMRQEALM 1935

Query: 1257 DMDRRREDARNPKRKPRLME-------EDELPSWIIKDDAEVERLTCEEEEEKIFGRGSR 1309
              DRRR   R P+ + R +E        ++   W  +++A+  R+         FG    
Sbjct: 1936 KTDRRR---RRPREEVRALEAEREAIISEKRQKWTRREEADFYRVV------STFG---- 1982

Query: 1310 QRRDVDYSDALTEKQWLRAIEDGNLEEMEEE---------VRLKKRKRRRNVDKDPAKED 1360
                V +     +  W +      L++  +E         V + +R  R  V  D    D
Sbjct: 1983 ----VIFDPVKQQFDWNQFRAFARLDKKSDESLEKYFSCFVAMCRRVCRMPVKPDDEPPD 2038

Query: 1361 VEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPE 1420
            +    +    P  E+ +       + +  I + V+++      QL E         +LPE
Sbjct: 2039 LSSIIE----PITEERASRTLYRIELLRKIREQVLHHP-----QLGERLKLCQPSLDLPE 2089

Query: 1421 YYELIRKPVDFK--KIKERIRNHKYRSLGDLEKDVMLLCHN------------------- 1459
            ++E  R   D      K  +    Y  L D E   +    N                   
Sbjct: 2090 WWECGRHDRDLLVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNTSSLNPLAVG 2149

Query: 1460 -AQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEED------EEESES 1512
              QT  +  S   +D  VL+       +      + + E  EEEEE D      ++E E+
Sbjct: 2150 FVQTPPVISSAHIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQECEA 2209

Query: 1513 EAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDEREQSE 1565
            EA SVK ++   K  + G D G  K    +G  +      + D++ +E  Q E
Sbjct: 2210 EASSVKNEL---KGVEVGADTG-SKSISEKGSEEDEEEKLEDDDKSEESSQPE 2258



 Score = 33.9 bits (76), Expect = 1.3
 Identities = 49/232 (21%), Positives = 85/232 (36%), Gaps = 35/232 (15%)

Query: 418  SKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLS 477
            SK   L  +   ++  +++KIE E +R  K +  +  + Q  ++ +    +   K+  LS
Sbjct: 2387 SKEDALNLSVPRQRRRRRRKIEIEAERAAKRRNLMEMVAQ-LRESQVVSENGQEKVVDLS 2445

Query: 478  KAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYV 537
            KA         RE    T        + ++             + +   A L +    ++
Sbjct: 2446 KA--------SREATSSTSNFSSLSSKFILPNVSTPVSDAFKTQMELLQAGLSRTPTRHL 2497

Query: 538  ANLTNLVWEHKQAQAAKEKKKRRRRK------------KKAEENAEGGESALG------- 578
             N + +  E         K++R RRK            K+   +AE  E           
Sbjct: 2498 LNGSLVDGEPPM------KRRRGRRKNVEGLDLLFMSHKRTSLSAEDAEVTKAFEEDIET 2551

Query: 579  PDGEPIDESSQMS-DLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEV 629
            P    I    Q+  D  + V + E G  L G +APK   L  WL+++P Y V
Sbjct: 2552 PPTRNIPSPGQLDPDTRIPVINLEDGTRLVGEDAPKNKDLVEWLKLHPTYTV 2603



 Score = 32.0 bits (71), Expect = 4.8
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 1333 NLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIID 1392
            +L+  +EE + KKR + +   K+P KE  EK + +  + P     P  PK  K   A   
Sbjct: 633  SLDGSQEEKKKKKRSKAKKDPKEP-KEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPK 691

Query: 1393 TVINYKDSSGRQLSE 1407
               + K S+ +  SE
Sbjct: 692  PKSSKKSSNKKPDSE 706


>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
            sapiens]
          Length = 1954

 Score =  387 bits (993), Expect = e-107
 Identities = 256/705 (36%), Positives = 373/705 (52%), Gaps = 72/705 (10%)

Query: 722  GTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVP 781
            GTL  YQL+GL W+   +    + ILADEMGLGKT+QTI  +  L +     GPYL+  P
Sbjct: 698  GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 757

Query: 782  LSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ--------LRSGK----------- 822
            LST+ NW  EF+ WAP    ++Y G    R  +           +RSGK           
Sbjct: 758  LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 817

Query: 823  -FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTG 881
             F+VLLT+YE I  D+ IL  I W  ++VDE HR+KN+  K  +VLN+ Y    ++LLTG
Sbjct: 818  KFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNS-YKIDYKLLLTG 876

Query: 882  TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKV 941
            TPLQN L EL+ LLNFL P  F +   F + F           D+++E+ I   ++LH +
Sbjct: 877  TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 923

Query: 942  LRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGG 1001
            L P +LRRLK +V   +P K E +++ ++S +QK  Y     K IL  +    + KG G 
Sbjct: 924  LGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYY-----KFILTRNFEALNSKGGGN 978

Query: 1002 AKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPK 1061
              +L+N +M L+K CNHPY+F     +  E     NG  +G+ L ++SGK  LL ++L K
Sbjct: 979  QVSLLNIMMDLKKCCNHPYLFP---VAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKK 1035

Query: 1062 LRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFI 1121
            LR   HRVL+F QMT ++ ++ED+  +  + Y R+DG      R   + +FN PG+Q F 
Sbjct: 1036 LRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFC 1095

Query: 1122 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1181
            FLLSTRAGGLG+NL  ADTV+I+DSDWNPH D+QA  RAHRIGQ  +V + R  T  SVE
Sbjct: 1096 FLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1155

Query: 1182 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQ 1241
            E+I   AK K+ +   V++ G+  +  S  ++   L  IL+   E   +D+V        
Sbjct: 1156 ERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE--LDDILKFGTEELFKDDV------EG 1207

Query: 1242 MIARREEEFDLFMRMDMDRRREDARNPKRK-----PRLMEEDELPSWIIKDDAEVERLTC 1296
            M+++ +        +   +    A + K+K     P   ++ E  S I  DDA + +L  
Sbjct: 1208 MMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPPGDNKDVEDSSVIHYDDAAISKLLD 1267

Query: 1297 EEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDP 1356
              ++       +  +   +Y  +    Q++   EDG +EE+E E+     K+  NVD D 
Sbjct: 1268 RNQDAT---DDTELQNMNEYLSSFKVAQYVVREEDG-VEEVEREI----IKQEENVDPD- 1318

Query: 1357 AKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSS 1401
                 EK  +       E L+ N  K  +     I   +NY D+S
Sbjct: 1319 ---YWEKLLRHHYEQQQEDLARNLGKGKR-----IRKQVNYNDAS 1355



 Score = 37.0 bits (84), Expect = 0.15
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 11/85 (12%)

Query: 1489 AKEEESEDESNEEEE---EEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKA 1545
            A+E E+EDE +EEE+   E  ++    E  S+  K K  K  +   +K KGK++   G  
Sbjct: 16   AEEMENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKE---NKCKGKRKKKEGS- 71

Query: 1546 KPVVSDFDSDEEQDEREQSEGSGTD 1570
                +D  S+ E+D  E+SE  G+D
Sbjct: 72   ----NDELSENEEDLEEKSESEGSD 92



 Score = 35.8 bits (81), Expect = 0.34
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 19/114 (16%)

Query: 549 QAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFG 608
           +  AA  KK +RRRKKK  ++ +G E+    D +   E  Q           + G+++  
Sbjct: 314 ECSAALGKKSKRRRKKKRIDDGDGYET----DHQDYCEVCQ-----------QGGEIILC 358

Query: 609 PEAPKASQ---LDAWLEMNP-GYEVAPRSDSEESDSDYEEEDEEEESSRQETEE 658
              P+A     LD  LE  P G    P  + E    + +++D+EEE    E EE
Sbjct: 359 DTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEEEE 412



 Score = 34.7 bits (78), Expect = 0.75
 Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 13/74 (17%)

Query: 1487 KIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKK-DDKGRDKGKGKKRPNRGKA 1545
            K  K+E S DE +E EE+  EE+SESE        K  KK  DK   K K KK+      
Sbjct: 64   KRKKKEGSNDELSENEEDL-EEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKK------ 116

Query: 1546 KPVVSDFDSDEEQD 1559
                 D D D+  D
Sbjct: 117  -----DEDEDDNDD 125


>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
          Length = 838

 Score =  379 bits (974), Expect = e-105
 Identities = 261/792 (32%), Positives = 398/792 (50%), Gaps = 117/792 (14%)

Query: 473  IQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQ 532
            +++L  AV T  A  E E++ E   +E+ER  +++ +    + +   + + RRL +LL++
Sbjct: 18   VEQLDTAVIT-PAMLEEEEQLEAAGLERER--KMLEKARMSWDRESTEIRYRRLQHLLEK 74

Query: 533  TDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSD 592
            ++ Y   L   +   +Q Q  ++KKK +  +KK     + G+++       ID S +   
Sbjct: 75   SNIYSKFLLTKM---EQQQLEEQKKKEKLERKKESLKVKKGKNS-------IDASEEKP- 123

Query: 593  LPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESS 652
                V   + G+                   +  Y ++     EE  S  ++  +E E  
Sbjct: 124  ----VMRKKRGRE------------------DESYNISEVMSKEEILSVAKKNKKENEDE 161

Query: 653  RQETEEKILLDPNSEEVSEKDAK-QIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISER 711
               +    + D    + S    K ++ ET +Q+    +       G    +         
Sbjct: 162  NSSSTNLCVEDLQKNKDSNSIIKDRLSETVRQNTKFFFDPVRKCNGQPVPF--------- 212

Query: 712  VEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 771
              +Q      G ++ YQ++G+EW+  L+ N +NGILADEMGLGKT+Q IA I  LM  + 
Sbjct: 213  --QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIA-LMIQRG 269

Query: 772  LNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQL--RSGKFN---VL 826
            + GP+L+  PLSTL NW  EF ++ P +  + Y GT   R+ LV  +  R G      V+
Sbjct: 270  VPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQIHPVV 329

Query: 827  LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQN 886
            +T++E  ++D++ L    WKY+IVDEGHR+KN  C+L + L   + A  ++LLTGTPLQN
Sbjct: 330  ITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELK-RFNADNKLLLTGTPLQN 388

Query: 887  KLPELWALLNFLLPTIFKSCSTFEQWFN-APFAMTGERVDLNEEETILIIRRLHKVLRPF 945
             L ELW+LLNFLLP +F    +FE WF+    + T E +   E E   ++  LH++L PF
Sbjct: 389  NLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQ-NVLHMLHQILTPF 447

Query: 946  LLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGS------EKDKKGK 999
            LLRRLK +V  ++P K E V+   +S  Q+I Y  +  + I    GS      E    G+
Sbjct: 448  LLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIELSPTGR 507

Query: 1000 GGAKT---------------LMNTIMQLR------------------------------- 1013
               +T               L   I Q++                               
Sbjct: 508  PKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMMLL 567

Query: 1014 -KICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLF 1072
             K CNHPY+ ++  +   +            EL   SGKF +LDR+LP+L+   H+VLLF
Sbjct: 568  RKCCNHPYLIEYPIDPVTQEFKIDE------ELVTNSGKFLILDRMLPELKKRGHKVLLF 621

Query: 1073 CQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLG 1132
             QMTS++ I+ DY   R+F + RLDG+    +R   +  FN    + FIFL+STRAGGLG
Sbjct: 622  SQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFN-TDPEVFIFLVSTRAGGLG 680

Query: 1133 LNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKL 1192
            +NL AADTV+I+DSDWNP  DLQAQDR HRIGQ   V V RL T N++++KI+  A  K 
Sbjct: 681  INLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKR 740

Query: 1193 NVDQKVIQAGMF 1204
             +++ +I    F
Sbjct: 741  KLEKLIIHKNHF 752


>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
            sapiens]
          Length = 2302

 Score =  375 bits (962), Expect = e-103
 Identities = 326/1121 (29%), Positives = 514/1121 (45%), Gaps = 173/1121 (15%)

Query: 203  QLAVQGKRTLPGLQQQQQQQQQQQ----QQQQQQQQQQQQPQQQPPQPQTQQQQQPALVN 258
            ++ +QG +     Q +  Q Q  +    Q Q QQ QQ+ Q   QPP  Q Q QQ P+   
Sbjct: 34   KIVLQGNQLAALTQAKNAQGQPAKVVTIQLQVQQPQQKIQIVPQPPSSQPQPQQPPSTQP 93

Query: 259  YNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAAAVPGPS------------ 306
                S    ++ GP         +PG R S       QP A +  G S            
Sbjct: 94   VTLSSVQQAQIMGPG-------QSPGQRLSVPVKVVLQPQAGSSQGASSGLSVVKVLSAS 146

Query: 307  ----VPQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELE 362
                +  PA   P    +   +++R    QK Q      I+ E   R +AR    I  + 
Sbjct: 147  EVAALSSPASSAPHSGGKTGMEENRRLEHQKKQE-KANRIVAEAIARARARGEQNIPRVL 205

Query: 363  N---LPGSLPPDLRTKATVELKALRLLNFQRQLRQEVV-ACMRRDTTLETALNSKAYKRS 418
            N   LP   P +   K   +  A   L  ++  + +   A   +  +    +     K+ 
Sbjct: 206  NEDELPSVRPEEEGEKKRRKKSAGERLKEEKPKKSKTSGASKTKGKSKLNTITPVVGKKR 265

Query: 419  KRQTLREARMTEKL-------EKQQKIEQERKRRQ-KHQEYLNSI-LQHAKDFKEYHRSV 469
            KR T  +    E +       +++  I++ R  RQ K ++Y   + ++   D +E    V
Sbjct: 266  KRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDV 325

Query: 470  AGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRL--- 526
             G I+             E  Q+ + E +    M+  +    E    ++D+    R+   
Sbjct: 326  TGPIKPEP-------ILPEPVQEPDGETLPS--MQFFVENPSEEDAAIVDKVLSMRIVKK 376

Query: 527  ---AYLLQQTDEYVANLTNLVWEHKQ----AQAAKEKKKRRRRKKKAEENAEGGESALGP 579
               +    + +E+     N  + H +    +Q  K+K+  ++ K+   + A+        
Sbjct: 377  ELPSGQYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQ-MRHFFHE 435

Query: 580  DGEPIDESSQMSDLPVKVTHT---ETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSE 636
            D EP +      D  +  +H+   + G+       P    L  W  +   YE        
Sbjct: 436  DEEPFNPDYVEVDRILDESHSIDKDNGE-------PVIYYLVKWCSL--PYE-------- 478

Query: 637  ESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSAR 696
              DS +E +++ +E   +E +    +     E+   +  Q     K ++  EY  +   R
Sbjct: 479  --DSTWELKEDVDEGKIREFKR---IQSRHPELKRVNRPQASAWKKLELSHEYKNRNQLR 533

Query: 697  GSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKT 756
                                          YQL+G+ W++  + N  N ILADEMGLGKT
Sbjct: 534  -----------------------------EYQLEGVNWLLFNWYNRQNCILADEMGLGKT 564

Query: 757  IQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRR---- 812
            IQ+IA +  +  +  ++GP+L+I PLST++NW  EF+ W   +  I Y G+ A R+    
Sbjct: 565  IQSIAFLQEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQ 622

Query: 813  ----------SLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCK 862
                       L+P   + KF+ L+TT+E I+ D   L +I W+ +I+DE HR+KN +CK
Sbjct: 623  YEMYCKDSRGRLIP--GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCK 680

Query: 863  LTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE 922
            L   L  H     ++LLTGTPLQN + EL++LL+FL P+ F S S F + F         
Sbjct: 681  LLDSLK-HMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFG-------- 731

Query: 923  RVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQ 982
              DL  EE    +++L  +L+P +LRRLK++VE  L  K E +I+ +++ +QK  YR + 
Sbjct: 732  --DLKTEEQ---VQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAIL 786

Query: 983  AKGI-LLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVI- 1040
             K    L+ G+     G      L+NT+M+LRK CNHPY+    EE        +  +I 
Sbjct: 787  EKNFSFLSKGA-----GHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIP 841

Query: 1041 ---NGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLD 1097
               +   + R++GK  L+D++LPKL+A  H+VL+F QM   + I+EDY   R +LY R+D
Sbjct: 842  HDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERID 901

Query: 1098 GTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQ 1157
            G  +   R A + +F++P S  F+FLL TRAGGLG+NL AADT +IFDSDWNP  DLQAQ
Sbjct: 902  GRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQ 961

Query: 1158 DRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA-----------GMFDQ 1206
             R HRIGQ   V+V RL T NS E ++   A  KL +D+ V+Q+             F +
Sbjct: 962  ARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSK 1021

Query: 1207 KS-SSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARR 1246
            K      R+    AI+E ++E  +  E    E ++Q++ RR
Sbjct: 1022 KEIEDLLRKGAYAAIMEEDDEGSKFCE----EDIDQILLRR 1058



 Score = 36.6 bits (83), Expect = 0.20
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 557  KKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQ 616
            KK+  RKK  E   E  E    P+   +D  ++     + V +   G +L G +AP+ ++
Sbjct: 2006 KKKGNRKKLVELEVECMEE---PNHLDVDLETR-----IPVINKVDGTLLVGEDAPRRAE 2057

Query: 617  LDAWLEMNPGYEVAPR 632
            L+ WL+ +P + V PR
Sbjct: 2058 LEMWLQGHPEFAVDPR 2073



 Score = 33.1 bits (74), Expect = 2.2
 Identities = 55/280 (19%), Positives = 116/280 (41%), Gaps = 42/280 (15%)

Query: 1262 REDARNPKRKPRLMEEDELPSWIIKDDAEVER-------LTCEEEEEKIFGRGSRQRRDV 1314
            R  AR  +  PR++ EDELPS   +++ E +R          EE+ +K    G+ + +  
Sbjct: 192  RARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSAGERLKEEKPKKSKTSGASKTKGK 251

Query: 1315 DYSDALT-----EKQWLRAIEDGNLEEM-------EEEVRLKKRKRRRNVDKDPAKEDVE 1362
               + +T     +++   + ++ ++E M       +EE  ++KR+  R V +    ED++
Sbjct: 252  SKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLD 311

Query: 1363 -KAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEY 1421
             K          +   P  P+       I+   +   D       + F++ PS ++    
Sbjct: 312  IKITDDEEEEEVDVTGPIKPE------PILPEPVQEPDGETLPSMQFFVENPSEEDA--- 362

Query: 1422 YELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEG---SQIYEDSIVLQ 1478
              ++ K +  + +K+ + + +Y       ++  +   N    + E    SQ+ +D  + Q
Sbjct: 363  -AIVDKVLSMRIVKKELPSGQYTE----AEEFFVKYKNYSYLHCEWATISQLEKDKRIHQ 417

Query: 1479 SVFKSARQKIAKE----EESEDESNEEEEEEDEEESESEA 1514
             + K  + K+A+      E E+  N +  E D    ES +
Sbjct: 418  KL-KRFKTKMAQMRHFFHEDEEPFNPDYVEVDRILDESHS 456


>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
            sapiens]
          Length = 2715

 Score =  364 bits (935), Expect = e-100
 Identities = 279/878 (31%), Positives = 430/878 (48%), Gaps = 125/878 (14%)

Query: 401  RRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAK 460
            + +TT+E+    +       ++  E+  TE  + Q++    + +R+K+ E L+  +    
Sbjct: 202  KSETTVESLELDQGLTNPSLRSPEES--TESTDSQKRRSGRQVKRRKYNEDLDFKVVD-D 258

Query: 461  DFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQ 520
            D +      AG+   LS +   W A  E   + +   IEK    + + E   G     + 
Sbjct: 259  DGETIAVLGAGRTSALSASTLAWQA--EEPPEDDANIIEKILASKTVQEVHPG-----EP 311

Query: 521  KKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEEN--AEGGESALG 578
              D  L Y+  +   Y+      + E ++     +K KR R K+   ++   E  E    
Sbjct: 312  PFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFN 371

Query: 579  PDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEES 638
            PD   +D         ++V HT+  +   G E      L  W  +               
Sbjct: 372  PDYVEVDRI-------LEVAHTKDAET--GEEV--THYLVKWCSL--------------- 405

Query: 639  DSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGS 698
               YEE       S  E EE +  DP   +V E ++ Q++   K               S
Sbjct: 406  --PYEE-------STWELEEDV--DP--AKVKEFESLQVLPEIKH---------VERPAS 443

Query: 699  QSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQ 758
             S+        +++EK      +  L+ YQL+G+ W++  + N  N ILADEMGLGKTIQ
Sbjct: 444  DSW--------QKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQ 495

Query: 759  TIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLV--- 815
            +I  ++ +   + ++GP+LII PLST++NW  EF  W   +  I Y G+   R+ +    
Sbjct: 496  SITFLSEIFL-RGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYE 553

Query: 816  ---------PQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV 866
                     P     KF+V++TT+E I+ D   L KI W  +I+DE HR+KN +CKL + 
Sbjct: 554  MVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEG 613

Query: 867  LNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDL 926
            L        ++LLTGTPLQN + EL++LLNFL P+ F S + F + F           DL
Sbjct: 614  LKL-MALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG----------DL 662

Query: 927  NEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGI 986
              EE +   ++L  +L+P +LRRLK +VE  L  K E +I+ +++ +QK  YR +  K  
Sbjct: 663  KTEEQV---KKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNF 719

Query: 987  -LLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGV----IN 1041
              LT G+ +          L+NT+M+LRK CNHPY+    EE   E    ++        
Sbjct: 720  SFLTKGANQHNM-----PNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQ 774

Query: 1042 GAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTK 1101
               + +A+GK  L+D++LPKL A  H+VL+F QM   + I+EDY   R + Y R+DG  +
Sbjct: 775  LQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVR 834

Query: 1102 SEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAH 1161
               R A + +F +P S  F+FLL TRAGGLG+NL AADT +IFDSDWNP  DLQAQ R H
Sbjct: 835  GNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCH 894

Query: 1162 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE--------- 1212
            RIGQ   V+V RL T NS E ++   A  KL +D+ V+Q    ++K  ++          
Sbjct: 895  RIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQD--INRKGGTNGVQQLSKMEV 952

Query: 1213 ----RRAFLQAILEHEEENEEEDEVPDDETLNQMIARR 1246
                R+    A+++ E+E  +  E    E ++Q++ RR
Sbjct: 953  EDLLRKGAYGALMDEEDEGSKFCE----EDIDQILQRR 986


>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
            sapiens]
          Length = 2881

 Score =  362 bits (930), Expect = 1e-99
 Identities = 230/612 (37%), Positives = 343/612 (56%), Gaps = 64/612 (10%)

Query: 668  EVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHY 727
            E S  + K+ ++ AK  +++   +Q S   ++        I +++++         L+ Y
Sbjct: 806  EDSTWELKEDVDLAK--IEEFEQLQASRPDTRRLDRPPSNIWKKIDQSRDYKNGNQLREY 863

Query: 728  QLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSN 787
            QL+GL W++  + N  N ILADEMGLGKTIQ+I  + Y +    + GP+LII PLST++N
Sbjct: 864  QLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIAN 922

Query: 788  WTYEFDKWAPSVVKISYKGTPAMRRSLVPQLR-------------SGKFNVLLTTYEYII 834
            W  EF  W    V + Y G+  + R ++ Q               + +F  ++TT+E I+
Sbjct: 923  WEREFRTWTDINVVV-YHGS-LISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMIL 980

Query: 835  KDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWAL 894
                 L  I W+ +I+DE HR+KN +CKL + L    +   ++LLTGTPLQN + EL++L
Sbjct: 981  GGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLE-HKVLLTGTPLQNTVEELFSL 1039

Query: 895  LNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV 954
            L+FL P  F S STF Q F           DL  EE +   ++L  +L+P +LRRLK++V
Sbjct: 1040 LHFLEPLRFPSESTFMQEFG----------DLKTEEQV---QKLQAILKPMMLRRLKEDV 1086

Query: 955  ESQLPEKVEYVIKCDMSALQKILYRHMQAKGI-LLTDGSEKDKKGKGGAKTLMNTIMQLR 1013
            E +L  K E +I+ +++ +QK  YR +  K    L+ G+     G+     L+NT+M+LR
Sbjct: 1087 EKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGA-----GQTNVPNLVNTMMELR 1141

Query: 1014 KICNHPYMFQHIEESFAEHLGYSNGVINGAE-------LYRASGKFELLDRILPKLRATN 1066
            K CNHPY+ +  EE     LG      N A        + +++GK  L+D++LPK++A  
Sbjct: 1142 KCCNHPYLIKGAEEKI---LGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGG 1198

Query: 1067 HRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLST 1126
            H+VL+F QM   + I+EDY   + +LY R+DG  +   R A + +F++P S  F+FLL T
Sbjct: 1199 HKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCT 1258

Query: 1127 RAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILA 1186
            RAGGLG+NL AADT +IFDSDWNP  DLQAQ R HRIGQ   V+V RL T NS E ++  
Sbjct: 1259 RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFD 1318

Query: 1187 AAKYKLNVDQKVIQA--------GMFDQKSSSH----ERRAFLQAILEHEEENEEEDEVP 1234
             A  KL +D+ V+Q+        G   Q S        RR    AI+E E+E  +  E  
Sbjct: 1319 RASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCE-- 1376

Query: 1235 DDETLNQMIARR 1246
              E ++Q++ RR
Sbjct: 1377 --EDIDQILLRR 1386



 Score = 37.0 bits (84), Expect = 0.15
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 579  PDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGY 627
            P G P  ES      PV V + + G  L G +APK   L+ WL+ +PGY
Sbjct: 2461 PQGIPDTES------PVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGY 2503


>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
            sapiens]
          Length = 897

 Score =  347 bits (891), Expect = 4e-95
 Identities = 249/702 (35%), Positives = 363/702 (51%), Gaps = 64/702 (9%)

Query: 694  SARGSQS------YYTVAHAISERVEKQSAL---LINGTLKHYQLQGLEWMVSLYNNNLN 744
            ++RG Q+       +T   A + RV++Q      L    L+ YQL+G+ W+   ++    
Sbjct: 7    TSRGGQAPGFLLRLHTEGRAEAARVQEQDLRQWGLTGIHLRSYQLEGVNWLAQRFHCQNG 66

Query: 745  GILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISY 804
             IL DEMGLGKT QTIAL  YL       GP+LI+ PLS LSNW  E  ++AP +  ++Y
Sbjct: 67   CILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMQRFAPGLSCVTY 126

Query: 805  KGTPAMRRSLVPQLRS-GKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKL 863
             G    R  L   L+   +F+VLLTTYE  +KD   L    W  ++VDE HR+KN    L
Sbjct: 127  AGDKEERACLQQDLKQESRFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLL 186

Query: 864  TQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGER 923
             + L+   V    +LLTGTP+QN L EL++LL+F+ P +F      +      F    + 
Sbjct: 187  HKTLSEFSVV-FSLLLTGTPIQNSLQELYSLLSFVEPDLFSKEEVGD------FIQRYQD 239

Query: 924  VDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQA 983
            ++   E        LHK+L+PFLLRR+K EV ++LP+K E VI   MSALQK  Y+ +  
Sbjct: 240  IEKESESA----SELHKLLQPFLLRRVKAEVATELPKKTEVVIYHGMSALQKKYYKAILM 295

Query: 984  KGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGA 1043
            K +   + +E  KK K     L N + QLRK  +HPY+F  +E    E          G 
Sbjct: 296  KDLDAFE-NETAKKVK-----LQNILSQLRKCVDHPYLFDGVEPEPFEV---------GD 340

Query: 1044 ELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1103
             L  ASGK  LLD++L  L +  HRVLLF QMT ++ I++DY  +R + Y R+DG+ + E
Sbjct: 341  HLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGE 400

Query: 1104 DRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRI 1163
            +R   +K F +     F+FLLSTRAGG+G+NL AADTV+  DSD+NP  DLQA  RAHRI
Sbjct: 401  ERHLAIKNFGQ--QPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRI 458

Query: 1164 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQ--AIL 1221
            GQ   V+V+RL   ++VEE +   A  KL +   +I+ G F   +      A LQ   IL
Sbjct: 459  GQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHFTLGAQKPAADADLQLSEIL 518

Query: 1222 EH------EEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLM 1275
            +         E    DE+  +  L +    +     L       R +E+ +N      L 
Sbjct: 519  KFGLDKLLASEGSTMDEIDLESILGETKDGQWVSDALPAAEGGSRDQEEGKN---HMYLF 575

Query: 1276 EEDELPSWIIKDD-------AEVERLTCEEEEEKIFGRGSRQRRDV---DYSDALTEKQW 1325
            E  +      K+D         +++   E+  ++  GR  R +  V      +  T+++ 
Sbjct: 576  EGKDYSKEPSKEDRKSFEQLVNLQKTLLEKASQE--GRSLRNKGSVLIPGLVEGSTKRK- 632

Query: 1326 LRAIEDGNLEEMEEEVRLKKRKRRRNV-DKDPAKEDVEKAKK 1366
             R +    LE+ +++ +    KRRR + +K   KE+ E  KK
Sbjct: 633  -RVLSPEELEDRQKKRQEAAAKRRRLIEEKKRQKEEAEHKKK 673


>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1 isoform b [Homo sapiens]
          Length = 1026

 Score =  303 bits (775), Expect = 1e-81
 Identities = 266/939 (28%), Positives = 431/939 (45%), Gaps = 120/939 (12%)

Query: 338  DPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVV 397
            +P E  + +     AR    I ELE+L  S   DL+      LK L    F ++   +++
Sbjct: 125  EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKEL----FPQRSDNDLL 178

Query: 398  ACMRRDTTLETALNSKAY---------KRSKRQTLREARMTEKLEKQQKIEQERKRRQKH 448
              +   +T++ A+ +            ++ K  +  E    ++    Q I   +K R  H
Sbjct: 179  KLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDH 235

Query: 449  QEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMA 508
             E  N   + + ++++    V     KL K    +     RE  KE E +  E +  L  
Sbjct: 236  GEESNESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKV 291

Query: 509  EDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRK----- 563
              E+   + + Q +      +  ++  Y  N T    + K +  A+    ++R+K     
Sbjct: 292  FAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNP 351

Query: 564  KKAEENAE---GGE--SALGPD---GEPIDESSQMSDLPVKVTHTETGKVLFGPEAP--K 613
            K+  E++E   G +  S+L  D   GE + E      +   +     G++   P+    K
Sbjct: 352  KRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKK 411

Query: 614  ASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKD 673
            A ++      N    +  +       S  E+     ++  QE +  I L    E++S K 
Sbjct: 412  AQKITELRPFNSWEALFTKMSKTNGLS--EDLIWHCKTLIQERDVVIRLMNKCEDISNKL 469

Query: 674  AKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 733
             KQ+            +M     G  +           +E+ S L  + +LK YQ  GL 
Sbjct: 470  TKQV------------TMLTGNGGGWN-----------IEQPSILNQSLSLKPYQKVGLN 506

Query: 734  WMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFD 793
            W+  ++ + LNGILADEMGLGKTIQ IA + YL +    NGP+LI+VP ST+ NW  E +
Sbjct: 507  WLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLREVN 565

Query: 794  KWAPSVVKISYKGTPAMRRSLVPQLRS--GKFNVLLTTYEYIIK---DKHILAKIRWKYM 848
             W P++  + Y G+   R+ +   + S    +NV++TTY   I    D+ +  +++  Y 
Sbjct: 566  LWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYA 625

Query: 849  IVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF-KSCS 907
            I DEGH +KN      Q L T   A  R+LLTGTP+QN L EL +LLNF++P +F  S S
Sbjct: 626  IFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTS 684

Query: 908  TFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIK 967
               + F++      E+    +E     I    ++++PF+LRR+K+EV  QLP K + +  
Sbjct: 685  EIRRMFSSKTKSADEQSIYEKER----IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIEL 740

Query: 968  CDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ---- 1023
            C MS  Q+ LY  +  +     +  EK+ +       + N +MQLRK+ NHP + +    
Sbjct: 741  CAMSEKQEQLYLGLFNRLKKSINNLEKNTE-------MCNVMMQLRKMANHPLLHRQYYT 793

Query: 1024 ----------------HIEES------------------FAEHLGYSNGVINGAELYRAS 1049
                            H E +                    +   + N      +L   S
Sbjct: 794  AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 853

Query: 1050 GKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALL 1109
            GKF +L  IL +L+    RV+LF Q T ++ I+E         YLRLDG T+  +R  L+
Sbjct: 854  GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 913

Query: 1110 KKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEV 1169
             +FN      F+FLLST+AGGLG+NL +A+ V++ D D NP+ D QA+DR HR+GQ  EV
Sbjct: 914  DEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 972

Query: 1170 RVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1208
             V++L +  ++EE +L   + KL ++Q +      D+ S
Sbjct: 973  LVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1011


>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1 isoform a [Homo sapiens]
          Length = 1028

 Score =  301 bits (772), Expect = 3e-81
 Identities = 267/941 (28%), Positives = 433/941 (46%), Gaps = 122/941 (12%)

Query: 338  DPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVV 397
            +P E  + +     AR    I ELE+L  S   DL+      LK L    F ++   +++
Sbjct: 125  EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKEL----FPQRSDNDLL 178

Query: 398  ACMRRDTTLETALNSKAY---------KRSKRQTLREARMTEKLEKQQKIEQERKRRQKH 448
              +   +T++ A+ +            ++ K  +  E    ++    Q I   +K R  H
Sbjct: 179  KLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDH 235

Query: 449  QEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMA 508
             E  N   + + ++++    V     KL K    +     RE  KE E +  E +  L  
Sbjct: 236  GEESNESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKV 291

Query: 509  EDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRK----- 563
              E+   + + Q +      +  ++  Y  N T    + K +  A+    ++R+K     
Sbjct: 292  FAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNP 351

Query: 564  KKAEENAE---GGE--SALGPD---GEPIDESSQMSDLPVKVTHTETGKVLFGPEAP--K 613
            K+  E++E   G +  S+L  D   GE + E      +   +     G++   P+    K
Sbjct: 352  KRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKK 411

Query: 614  ASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKD 673
            A ++      N    +  +       S  E+     ++  QE +  I L    E++S K 
Sbjct: 412  AQKITELRPFNSWEALFTKMSKTNGLS--EDLIWHCKTLIQERDVVIRLMNKCEDISNKL 469

Query: 674  AKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 733
             KQ+            +M     G  +           +E+ S L  + +LK YQ  GL 
Sbjct: 470  TKQV------------TMLTGNGGGWN-----------IEQPSILNQSLSLKPYQKVGLN 506

Query: 734  WMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFD 793
            W+  ++ + LNGILADEMGLGKTIQ IA + YL +    NGP+LI+VP ST+ NW  E +
Sbjct: 507  WLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLREVN 565

Query: 794  KWAPSVVKISYKGTPAMRRSLVPQLRS--GKFNVLLTTYEYIIK---DKHILAKIRWKYM 848
             W P++  + Y G+   R+ +   + S    +NV++TTY   I    D+ +  +++  Y 
Sbjct: 566  LWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYA 625

Query: 849  IVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF-KSCS 907
            I DEGH +KN      Q L T   A  R+LLTGTP+QN L EL +LLNF++P +F  S S
Sbjct: 626  IFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTS 684

Query: 908  TFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIK 967
               + F++      E+    +E     I    ++++PF+LRR+K+EV  QLP K + +  
Sbjct: 685  EIRRMFSSKTKSADEQSIYEKER----IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIEL 740

Query: 968  CDMSALQKILYRHM--QAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ-- 1023
            C MS  Q+ LY  +  + K  +    +EK+ +       + N +MQLRK+ NHP + +  
Sbjct: 741  CAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHRQY 793

Query: 1024 ------------------HIEES------------------FAEHLGYSNGVINGAELYR 1047
                              H E +                    +   + N      +L  
Sbjct: 794  YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL 853

Query: 1048 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1107
             SGKF +L  IL +L+    RV+LF Q T ++ I+E         YLRLDG T+  +R  
Sbjct: 854  DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 913

Query: 1108 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQN 1167
            L+ +FN      F+FLLST+AGGLG+NL +A+ V++ D D NP+ D QA+DR HR+GQ  
Sbjct: 914  LIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 972

Query: 1168 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1208
            EV V++L +  ++EE +L   + KL ++Q +      D+ S
Sbjct: 973  EVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013


>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1 isoform a [Homo sapiens]
          Length = 1028

 Score =  301 bits (772), Expect = 3e-81
 Identities = 267/941 (28%), Positives = 433/941 (46%), Gaps = 122/941 (12%)

Query: 338  DPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVV 397
            +P E  + +     AR    I ELE+L  S   DL+      LK L    F ++   +++
Sbjct: 125  EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKEL----FPQRSDNDLL 178

Query: 398  ACMRRDTTLETALNSKAY---------KRSKRQTLREARMTEKLEKQQKIEQERKRRQKH 448
              +   +T++ A+ +            ++ K  +  E    ++    Q I   +K R  H
Sbjct: 179  KLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDH 235

Query: 449  QEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMA 508
             E  N   + + ++++    V     KL K    +     RE  KE E +  E +  L  
Sbjct: 236  GEESNESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKV 291

Query: 509  EDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRK----- 563
              E+   + + Q +      +  ++  Y  N T    + K +  A+    ++R+K     
Sbjct: 292  FAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNP 351

Query: 564  KKAEENAE---GGE--SALGPD---GEPIDESSQMSDLPVKVTHTETGKVLFGPEAP--K 613
            K+  E++E   G +  S+L  D   GE + E      +   +     G++   P+    K
Sbjct: 352  KRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKK 411

Query: 614  ASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKD 673
            A ++      N    +  +       S  E+     ++  QE +  I L    E++S K 
Sbjct: 412  AQKITELRPFNSWEALFTKMSKTNGLS--EDLIWHCKTLIQERDVVIRLMNKCEDISNKL 469

Query: 674  AKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 733
             KQ+            +M     G  +           +E+ S L  + +LK YQ  GL 
Sbjct: 470  TKQV------------TMLTGNGGGWN-----------IEQPSILNQSLSLKPYQKVGLN 506

Query: 734  WMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFD 793
            W+  ++ + LNGILADEMGLGKTIQ IA + YL +    NGP+LI+VP ST+ NW  E +
Sbjct: 507  WLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLREVN 565

Query: 794  KWAPSVVKISYKGTPAMRRSLVPQLRS--GKFNVLLTTYEYIIK---DKHILAKIRWKYM 848
             W P++  + Y G+   R+ +   + S    +NV++TTY   I    D+ +  +++  Y 
Sbjct: 566  LWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYA 625

Query: 849  IVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF-KSCS 907
            I DEGH +KN      Q L T   A  R+LLTGTP+QN L EL +LLNF++P +F  S S
Sbjct: 626  IFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTS 684

Query: 908  TFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIK 967
               + F++      E+    +E     I    ++++PF+LRR+K+EV  QLP K + +  
Sbjct: 685  EIRRMFSSKTKSADEQSIYEKER----IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIEL 740

Query: 968  CDMSALQKILYRHM--QAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ-- 1023
            C MS  Q+ LY  +  + K  +    +EK+ +       + N +MQLRK+ NHP + +  
Sbjct: 741  CAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHRQY 793

Query: 1024 ------------------HIEES------------------FAEHLGYSNGVINGAELYR 1047
                              H E +                    +   + N      +L  
Sbjct: 794  YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL 853

Query: 1048 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1107
             SGKF +L  IL +L+    RV+LF Q T ++ I+E         YLRLDG T+  +R  
Sbjct: 854  DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 913

Query: 1108 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQN 1167
            L+ +FN      F+FLLST+AGGLG+NL +A+ V++ D D NP+ D QA+DR HR+GQ  
Sbjct: 914  LIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 972

Query: 1168 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1208
            EV V++L +  ++EE +L   + KL ++Q +      D+ S
Sbjct: 973  EVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013


>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
          Length = 3230

 Score =  269 bits (688), Expect = 1e-71
 Identities = 155/432 (35%), Positives = 242/432 (56%), Gaps = 47/432 (10%)

Query: 628  EVAPRSDSEESDSDYEE--EDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDV 685
            E  P+ DS       E+  EDEE+E S +E          SE    +DA+   +  +++ 
Sbjct: 486  EEPPQEDSSSQSDSVEDRSEDEEDEHSEEEETSGSSASEESESEESEDAQSQSQADEEEE 545

Query: 686  DDEYSMQY----------------------SARGSQSYYTVAHAISERVEKQS------- 716
            DD++ ++Y                      +  G +   T   A +E ++ +        
Sbjct: 546  DDDFGVEYLLARDEEQSEADAGSGPPTPGPTTLGPKKEITDIAAAAESLQPKGYTLATTQ 605

Query: 717  -----ALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 771
                  LL+ G L+ YQ  GL+W+V++Y   LNGILADEMGLGKTIQTI+L+ +L   K 
Sbjct: 606  VKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKG 665

Query: 772  LNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRR-SLVPQLRSGKFNVLLTTY 830
              GP+LIIVP S + NW  E  +W PS   ++Y G    R+       +   F+V +T+Y
Sbjct: 666  NWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSY 725

Query: 831  EYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 890
            + +++D     +  W+Y+I+DE   +KN   +  Q L  ++ + RR+LLTGTPLQN L E
Sbjct: 726  KLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSL-LNFNSQRRLLLTGTPLQNSLME 784

Query: 891  LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRL 950
            LW+L++FL+P +F+S   F++WF+ P  +TG  ++ ++E    +++RLHKVLRPFLLRR+
Sbjct: 785  LWSLMHFLMPHVFQSHREFKEWFSNP--LTG-MIEGSQEYNEGLVKRLHKVLRPFLLRRV 841

Query: 951  KKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIM 1010
            K +VE Q+P+K E+VI+C +S  Q+ LY    A+       + K+    G   +++N +M
Sbjct: 842  KVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQ------TTTKETLATGHFMSVINILM 895

Query: 1011 QLRKICNHPYMF 1022
            QLRK+CNHP +F
Sbjct: 896  QLRKVCNHPNLF 907



 Score =  166 bits (419), Expect = 2e-40
 Identities = 115/338 (34%), Positives = 176/338 (52%), Gaps = 32/338 (9%)

Query: 1050 GKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALL 1109
            GK + L  +L +L+A  HRVL+F QMT ++ ++E +  +   LYLRLDG+T+ E R AL+
Sbjct: 2043 GKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALM 2102

Query: 1110 KKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEV 1169
            ++FN    + F F+LSTR+GG+G+NL  ADTVV +DSDWNP  D QAQDR HRIGQ  +V
Sbjct: 2103 ERFNAD-KRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 2161

Query: 1170 RVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER-RAFLQAILEHEEEN- 1227
             + RL +  +VEE IL  A  K  +    I+ G F       +  R      LE    + 
Sbjct: 2162 HIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMPLEEPSSSS 2221

Query: 1228 ------EEEDEVPDDET--LNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDE 1279
                  EEE+ V   +T  L Q + R E+E D+        R       ++   L E +E
Sbjct: 2222 VPSAPEEEEETVASKQTHILEQALCRAEDEEDI--------RAATQAKAEQVAELAEFNE 2273

Query: 1280 LPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEE 1339
               +   +  E  R   E+EE       SR  +++    AL E+  L  IE   ++ +E 
Sbjct: 2274 NDGFPAGEGEEAGRPGAEDEEM------SRAEQEI---AALVEQ--LTPIERYAMKFLEA 2322

Query: 1340 EVRLKKRKRRRNVDK--DPAKEDVEKAKKRRGRPPAEK 1375
             +    R+  +  ++  + A++D+++AK+   R P E+
Sbjct: 2323 SLEEVSREELKQAEEQVEAARKDLDQAKEEVFRLPQEE 2360



 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 83/363 (22%), Positives = 123/363 (33%), Gaps = 46/363 (12%)

Query: 1    MSTPTDPGAMPHPG---PSPGPGPSPGPILGPSPGPGPSPGSVHS---MMGPSPGPP--- 51
            ++TP  P A P      PSP P  +P P+L PSPG  P   S  +   +M PS  P    
Sbjct: 1583 LATPLAPMAAPQTAILAPSPAPPLAPLPVLAPSPGAAPVLASSQTPVPVMAPSSTPGTSL 1642

Query: 52   SVSHPMPTMGSTDFPQEGMHQMHKPIDG-IHDKGIVEDIHCGSMKGTGMRPPHP------ 104
            + + P+P       P      +  P+   +      + +         +    P      
Sbjct: 1643 ASASPVPAPTPVLAPSSTQTMLPAPVPSPLPSPASTQTLALAPALAPTLGGSSPSQTLSL 1702

Query: 105  GMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAM 164
            G G PQ P    +   ++P  S +  P    S   G     P + P+Q  +L P  P A 
Sbjct: 1703 GTGNPQGPFPTQTLS-LTPASSLVPTPAQTLSLAPG-----PPLGPTQTLSLAPAPPLAP 1756

Query: 165  SQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQ--- 221
            +      SP  P   H L    LA    +     P ++Q        +P L     Q   
Sbjct: 1757 A------SPVGPAPAHTL---TLAPASSSASLLAPASVQTLTLSPAPVPTLGPAAAQTLA 1807

Query: 222  --QQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLP 279
                  Q    Q            P P T   + P  V+ + P       SGP +P    
Sbjct: 1808 LAPASTQSPASQASSLVVSASGAAPLPVTMVSRLP--VSKDEPDTLTLR-SGPPSPPSTA 1864

Query: 280  VPAPGGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSP----VLQLQQKQSRISPIQKPQ 335
                G RP   PP    PP +     S+ +    Q S     + QL +    ++P+   +
Sbjct: 1865 TSFGGPRPRRQPP---PPPRSPFYLDSLEEKRKRQRSERLERIFQLSEAHGALAPVYGTE 1921

Query: 336  GLD 338
             LD
Sbjct: 1922 VLD 1924



 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 81/324 (25%), Positives = 106/324 (32%), Gaps = 44/324 (13%)

Query: 9    AMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGP-PSVSHPMPTMGSTDFPQ 67
            A+ +P P+  PG  P P LG +  P P+P  V  ++     P P VS   P       P 
Sbjct: 1340 AVLNPRPTLTPGRLPTPTLGTARAPMPTPTLVRPLLKLVHSPSPEVSASAPGAA----PL 1395

Query: 68   EGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRP-PHPGMGPPQSPMDQHSQGYMSPH-- 124
                 +H P                S+ G    P P P   P  SP+       +S    
Sbjct: 1396 TISSPLHVP---------------SSLPGPASSPMPIPNSSPLASPVSSTVSVPLSSSLP 1440

Query: 125  -------PSPLGAP--EHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFS 175
                   P+P  AP    +S+P++     P  +    P  L P  P A   P+  PS  S
Sbjct: 1441 ISVPTTLPAPASAPLTIPISAPLTVSASGPALLTSVTP-PLAPVVPAAPGPPSLAPSGAS 1499

Query: 176  PVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQ 235
            P     L   +     L+  Q     L LA      +PGL                    
Sbjct: 1500 P-SASALTLGLATAPSLSSSQTPGHPLLLAPTSSH-VPGL-NSTVAPACSPVLVPASALA 1556

Query: 236  QQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAA 295
               P    P P       PA       S     L+ P  P   P  A    PSPAPP A 
Sbjct: 1557 SPFPSAPNPAPAQASLLAPA-------SSASQALATPLAPMAAPQTAILA-PSPAPPLAP 1608

Query: 296  QPPAAAVPGPSVPQPAPGQPSPVL 319
             P  A  PG +    +   P PV+
Sbjct: 1609 LPVLAPSPGAAPVLASSQTPVPVM 1632



 Score = 41.6 bits (96), Expect = 0.006
 Identities = 78/314 (24%), Positives = 116/314 (36%), Gaps = 45/314 (14%)

Query: 14   GPSPGPGPSPGPILGPSPGPGPSPGSVHS--MMGPSP-GPPSVSHPMPTMGSTDFPQEGM 70
            GP P   P PGP L   P PGP P  + +  M+  SP GPP +    P       P   +
Sbjct: 1020 GPVP-VRPPPGPELSAQPTPGPVPQVLPASLMVSASPAGPPLIPASRP-------PGPVL 1071

Query: 71   HQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGA 130
                +P  G   + +   +  G + GT  RPP P +    +P    +   +SP P P  +
Sbjct: 1072 LPPLQPNSGSLPQVLPSPL--GVLSGTS-RPPTPTLSLKPTP---PAPVRLSPAPPPGSS 1125

Query: 131  PEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLHQLRAQILAYK 190
                   +  G   PP    +           A+  P   P+P   +    ++A++ + +
Sbjct: 1126 SLLKPLTVPPGYTFPPAAATTTSTTTATATTTAVPAPT--PAPQRLILSPDMQARLPSGE 1183

Query: 191  MLARGQ-------PL-----PETLQLAVQG-KRTLPGLQQQQQQQQQQQQQQQQQQQQQQ 237
            +++ GQ       P+      + L   +QG K TL G Q +Q    Q +  Q+       
Sbjct: 1184 VVSIGQLASLAQRPVANAGGSKPLTFQIQGNKLTLTGAQVRQLAVGQPRPLQRNVVHLVS 1243

Query: 238  QPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPA----PPA 293
               Q           QPA V   +   P P   GP+    LP   P   P+P     P A
Sbjct: 1244 AGGQH------HLISQPAHVALIQAVAPTP---GPTPVSVLPSSTPSTTPAPTGLSLPLA 1294

Query: 294  AAQPPAAAVPGPSV 307
            A Q P   V    V
Sbjct: 1295 ANQVPPTMVNNTGV 1308



 Score = 39.7 bits (91), Expect = 0.023
 Identities = 77/351 (21%), Positives = 116/351 (33%), Gaps = 65/351 (18%)

Query: 7    PGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGS---------VHSMMGPSPGPPSVSHPM 57
            P   P P P+P   P+  P L P P   P P S         VH +  PSP PPS   P 
Sbjct: 2437 PRPAPRPRPTPASAPAAIPALVPVPVSAPVPISAPNPITILPVHIL--PSPPPPSQIPPC 2494

Query: 58   PTMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHP-GMGPPQSPMDQH 116
             +   T  P       H P                  +   + P  P  +GPP  P+   
Sbjct: 2495 SSPACTPPPACTPPPAHTP---------------PPAQTCLVTPSSPLLLGPPSVPISAS 2539

Query: 117  ---------------SQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQ---------MPPSQ 152
                           +Q   SP    L +    SS  S     PP+         +P S+
Sbjct: 2540 VTNLPLGLRPEAELCAQALASPESLELASV--ASSETSSLSLVPPKDLLPVAVEILPVSE 2597

Query: 153  PG-ALIPGDPQAMSQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRT 211
               +L P  P    +   G  P    Q     A+     +L  G+ LP  L ++      
Sbjct: 2598 KNLSLTPSAPSLTLE--AGSIPNGQEQEAPDSAEGTTLTVLPEGEELP--LCVSESNGLE 2653

Query: 212  LP--GLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPEL 269
            LP      +  Q+  +  +  ++  + + P   P +PQ     + A  + +  +   PE 
Sbjct: 2654 LPPSAASDEPLQEPLEADRTSEELTEAKTPTSSPEKPQELVTAEVAAPSTSSSATSSPEG 2713

Query: 270  SGPSTPQKLPVPAPGGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSPVLQ 320
              P+ P +    A             QP     PGP V +  PG+   V++
Sbjct: 2714 PSPARPPRRRTSADVEIRGQGTGRPGQP-----PGPKVLRKLPGRLVTVVE 2759



 Score = 39.7 bits (91), Expect = 0.023
 Identities = 65/264 (24%), Positives = 87/264 (32%), Gaps = 40/264 (15%)

Query: 36   SPGS--VHSMMGPSPGPPSVSHPMPTMGSTDFP----QEGMHQMHKPIDGIHDKGIVEDI 89
            SPGS  V SM GP   PP +  P     S+  P    Q  + + H  + G+   G  E+ 
Sbjct: 2787 SPGSPSVRSMSGPESSPP-IGGPCEAAPSSSLPTPPQQPFIARRHIEL-GVTGGGSPEN- 2843

Query: 90   HCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQMP 149
              G      + PP       + P    S     P  +  G  E  SS + G   T    P
Sbjct: 2844 --GDGALLAITPPAVKRRRGRPPKKNRS-----PADAGRGVDEAPSSTLKG--KTNGADP 2894

Query: 150  PSQPGALIPGDPQAMSQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGK 209
               P  LI  DP    Q   GP P  P  +H+    +   +   RG+P P+   L + G 
Sbjct: 2895 VPGPETLIVADPVLEPQLIPGPQPLGPQPVHRPNPLLSPVEKRRRGRP-PKARDLPIPGT 2953

Query: 210  RTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPEL 269
             +  G                      +   Q PP P       P LV    P+      
Sbjct: 2954 ISSAG------------------DGNSESRTQPPPHPSPLTPLPPLLV---CPTATVANT 2992

Query: 270  SGPSTPQKLPVPAPGGRPSPAPPA 293
                T    P     GRP   PP+
Sbjct: 2993 VTTVTISTSPPKRKRGRPPKNPPS 3016



 Score = 36.2 bits (82), Expect = 0.26
 Identities = 49/173 (28%), Positives = 64/173 (36%), Gaps = 19/173 (10%)

Query: 207  QGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQP-PQPQTQQQQQPALVNYNRPSGP 265
            QG    P +   Q +      +    +++  +P  +P P P +     PALV     S P
Sbjct: 2407 QGANHTPVISAHQTRSTTTPPRCSPARERVPRPAPRPRPTPASAPAAIPALVPVP-VSAP 2465

Query: 266  GPELSGPSTPQKLPV------PAPGGRPSPAPPAAAQPPAAAVPGPSVPQPAPG---QPS 316
             P +S P+    LPV      P P   P  + PA   PPA   P    P PA      PS
Sbjct: 2466 VP-ISAPNPITILPVHILPSPPPPSQIPPCSSPACTPPPACTPPPAHTPPPAQTCLVTPS 2524

Query: 317  PVLQLQQKQSRISP--IQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGS 367
              L L      IS      P GL P     E E   QA  +    EL ++  S
Sbjct: 2525 SPLLLGPPSVPISASVTNLPLGLRP-----EAELCAQALASPESLELASVASS 2572



 Score = 35.8 bits (81), Expect = 0.34
 Identities = 81/333 (24%), Positives = 107/333 (32%), Gaps = 43/333 (12%)

Query: 3    TPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSV-HSMMGPSPGPPSVSHP----M 57
            +P+   +   PG +P    SP  +    PGP  SP  + +S    SP   +VS P    +
Sbjct: 1380 SPSPEVSASAPGAAPLTISSPLHVPSSLPGPASSPMPIPNSSPLASPVSSTVSVPLSSSL 1439

Query: 58   PTMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHS 117
            P    T  P      +  PI        +     G    T + PP   + P        +
Sbjct: 1440 PISVPTTLPAPASAPLTIPI-----SAPLTVSASGPALLTSVTPPLAPVVPAAPGPPSLA 1494

Query: 118  QGYMSPHPSPL-----GAPEHVSSPMSGG----GPTPPQMP-------PSQPGALIPGDP 161
                SP  S L      AP   SS   G      PT   +P       P+    L+P   
Sbjct: 1495 PSGASPSASALTLGLATAPSLSSSQTPGHPLLLAPTSSHVPGLNSTVAPACSPVLVPASA 1554

Query: 162  QAM---SQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQ 218
             A    S PN  P+  S +      +Q LA  +     P     Q A+      P L   
Sbjct: 1555 LASPFPSAPNPAPAQASLLAPASSASQALATPLAPMAAP-----QTAILAPSPAPPLAPL 1609

Query: 219  QQQQQQQQQQQQQQQQQQQQPQQQPPQ-PQTQQQQQPALVNYNRPSGPGPELSGPSTPQK 277
                            Q   P   P   P T      +L + +    P P L+  ST   
Sbjct: 1610 PVLAPSPGAAPVLASSQTPVPVMAPSSTPGT------SLASASPVPAPTPVLAPSSTQTM 1663

Query: 278  LPVPAPGGRPSPA--PPAAAQPPAAAVPGPSVP 308
            LP P P   PSPA     A  P  A   G S P
Sbjct: 1664 LPAPVPSPLPSPASTQTLALAPALAPTLGGSSP 1696



 Score = 35.4 bits (80), Expect = 0.44
 Identities = 81/387 (20%), Positives = 147/387 (37%), Gaps = 94/387 (24%)

Query: 310 PAPGQPS-PVLQLQQKQ------SRISPIQKPQ-------GLDPVEILQEREYRLQARIA 355
           P+P  P  PVLQ Q         + +SP            G+ P  I Q+          
Sbjct: 5   PSPAHPQLPVLQTQMVSDGMTGSNPVSPASSSSPASSGAGGISPQHIAQD---------- 54

Query: 356 HRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAY 415
                L+  PG  PPD    ATV L+   L         +      +    E + +++  
Sbjct: 55  ---SSLDGPPG--PPD---GATVPLEGFSL--------SQAADLANKGPKWEKS-HAEIA 97

Query: 416 KRSKRQTLREARMTE-------KLEKQQKIEQERKRRQKHQEYLNSILQH-AKDFKEYHR 467
           +++K +   E R+ E        L++  K+  E  R + H +YL   +Q  + DF +  R
Sbjct: 98  EQAKHEAEIETRIAELRKEGFWSLKRLPKVP-EPPRPKGHWDYLCEEMQWLSADFAQERR 156

Query: 468 SVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLA 527
              G  +K+ + V   H     EQ+++ ER  +E                 +Q K RR+A
Sbjct: 157 WKRGVARKVVRMVIRHH----EEQRQKEERARRE-----------------EQAKLRRIA 195

Query: 528 YLL-QQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDE 586
             + +   ++ +N+  +V + KQ    +EK     RKK  + + +     +G   +  D 
Sbjct: 196 STMAKDVRQFWSNVEKVV-QFKQQSRLEEK-----RKKALDLHLD---FIVGQTEKYSDL 246

Query: 587 SSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEED 646
            SQ  + P+  +   +   L    A  +                P S  ++ D D++ ++
Sbjct: 247 LSQSLNQPLTSSKAGSSPCLGSSSAASSPP-------------PPASRLDDEDGDFQPQE 293

Query: 647 EEEESSRQETEEKILLDPNSEEVSEKD 673
           +EEE   +  E +   + N  E   ++
Sbjct: 294 DEEEDDEETIEVEEQQEGNDAEAQRRE 320



 Score = 35.4 bits (80), Expect = 0.44
 Identities = 37/152 (24%), Positives = 54/152 (35%), Gaps = 26/152 (17%)

Query: 14   GPSPGPGPSP----GPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTMGSTDFPQEG 69
            G  P PGP       P+L P   PGP P      +GP P    V  P P +   +  + G
Sbjct: 2891 GADPVPGPETLIVADPVLEPQLIPGPQP------LGPQP----VHRPNPLLSPVEKRRRG 2940

Query: 70   MHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLG 129
                 + +      G +     G+ +     PPHP    P  P+       + P  +   
Sbjct: 2941 RPPKARDLP---IPGTISSAGDGNSESRTQPPPHPSPLTPLPPL------LVCPTATVAN 2991

Query: 130  APEHV---SSPMSGGGPTPPQMPPSQPGALIP 158
                V   +SP       PP+ PPS   + +P
Sbjct: 2992 TVTTVTISTSPPKRKRGRPPKNPPSPRPSQLP 3023



 Score = 33.9 bits (76), Expect = 1.3
 Identities = 37/124 (29%), Positives = 47/124 (37%), Gaps = 34/124 (27%)

Query: 245  QPQTQQQQQPALV--NYNRPSGP-------GPELSGPSTPQKLPVPAPGGRPSPAPPAAA 295
            QP  +Q+ +  +V  N   P GP       GPELS   TP  +P   P      A PA  
Sbjct: 999  QPVPKQEGRTVVVVNNPRAPLGPVPVRPPPGPELSAQPTPGPVPQVLPASLMVSASPAGP 1058

Query: 296  Q-PPAAAVPGP-----------SVPQPAPG----------QPSPVLQLQQKQS---RISP 330
               PA+  PGP           S+PQ  P            P+P L L+       R+SP
Sbjct: 1059 PLIPASRPPGPVLLPPLQPNSGSLPQVLPSPLGVLSGTSRPPTPTLSLKPTPPAPVRLSP 1118

Query: 331  IQKP 334
               P
Sbjct: 1119 APPP 1122



 Score = 32.3 bits (72), Expect = 3.7
 Identities = 38/145 (26%), Positives = 51/145 (35%), Gaps = 26/145 (17%)

Query: 244  PQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAP-PAAAQPPAAAV 302
            P P+      PA++N      P P L    TP +LP P  G   +P P P   +P    V
Sbjct: 1329 PAPRPPSSGLPAVLN------PRPTL----TPGRLPTPTLGTARAPMPTPTLVRPLLKLV 1378

Query: 303  --PGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQGL-----DPVEILQEREYRLQARIA 355
              P P V   APG     +         SP+  P  L      P+ I             
Sbjct: 1379 HSPSPEVSASAPGAAPLTIS--------SPLHVPSSLPGPASSPMPIPNSSPLASPVSST 1430

Query: 356  HRIQELENLPGSLPPDLRTKATVEL 380
              +    +LP S+P  L   A+  L
Sbjct: 1431 VSVPLSSSLPISVPTTLPAPASAPL 1455



 Score = 31.2 bits (69), Expect = 8.3
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 1489 AKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPV 1548
            A   + E E   E EE  +E+S S++ SV         +D+  D+               
Sbjct: 472  ANSSDCEPEGPVEAEEPPQEDSSSQSDSV---------EDRSEDEEDEHSEEEETSGSSA 522

Query: 1549 VSDFDSDEEQDEREQSEGSGTDDE 1572
              + +S+E +D + QS+    +++
Sbjct: 523  SEESESEESEDAQSQSQADEEEED 546


>gi|4557565 excision repair cross-complementing rodent repair
            deficiency, complementation group 6 [Homo sapiens]
          Length = 1493

 Score =  263 bits (671), Expect = 1e-69
 Identities = 207/762 (27%), Positives = 354/762 (46%), Gaps = 89/762 (11%)

Query: 499  EKERMRRLMAEDEEGYRK-LIDQKK----------DRRLAYLLQQTDEYVANLTNLVWEH 547
            ++++ R++M  +  G+ K L DQ K          ++R A          A + N    +
Sbjct: 256  QEKKPRKIMLNEASGFEKYLADQAKLSFERKKQGCNKRAARKAPAPVTPPAPVQNKNKPN 315

Query: 548  KQAQAAKEKKKRRRRK-KKAEENA-------------EGGESALGPDGEPIDESSQMSDL 593
            K+A+   +K++R ++  KK ++ A                ES + P+ E   E  +    
Sbjct: 316  KKARVLSKKEERLKKHIKKLQKRALQFQGKVGLPKARRPWESDMRPEAEGDSEGEESEYF 375

Query: 594  PVKVTHTETGKVLFGPEAPKASQLDAWLEMNP---GYEVAPRSDSEESDSDYEEEDEEEE 650
            P +    E    + G EA  +     + E+ P   G +   +   +E D D+     EE 
Sbjct: 376  PTEEEEEEEDDEVEGAEADLSGDGTDY-ELKPLPKGGKRQKKVPVQEIDDDFFPSSGEEA 434

Query: 651  SSRQETE-----EKI--LLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYT 703
             +    E      K+    D   E+  ++  ++  +   QD +    ++  +  S + + 
Sbjct: 435  EAASVGEGGGGGRKVGRYRDDGDEDYYKQRLRRWNKLRLQDKEKRLKLEDDSEESDAEFD 494

Query: 704  VAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALI 763
                +   + K+        L  YQ  G+ W+  L+     GIL DEMGLGKTIQ IA +
Sbjct: 495  EGFKVPGFLFKK--------LFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFL 546

Query: 764  TYLMEHKRLN----------GPYLIIVPLSTLSNWTYEFDKWAPS--VVKISYKGTPAMR 811
              L   K             GP +I+ P + +  W  EF  W P   V  +   G+   +
Sbjct: 547  AGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHK 606

Query: 812  RSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 871
            +  + +  +    +L+T+Y YI   +  +++  W Y+I+DEGH+++N +  +T      +
Sbjct: 607  KEKLIRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACK-QF 665

Query: 872  VAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--ERVDLNEE 929
              P RI+L+G+P+QN L ELW+L +F+ P    +   F + F+ P  M G      +  +
Sbjct: 666  RTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVK 725

Query: 930  ETILIIRRLHKVLRPFLLRRLKKEVESQL--PEKVEYVIKCDMSALQKILYRHMQAKGIL 987
                    L   + P+LLRR+K +V+  L  P+K E V+ C ++  Q  +Y++       
Sbjct: 726  TAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFV----- 780

Query: 988  LTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQH---------IEESFAEHLGYSNG 1038
                S++  +   G   + + ++ LRKICNHP +F            +E   +  GY   
Sbjct: 781  ---DSKEVYRILNGEMQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGY--- 834

Query: 1039 VINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDG 1098
                   ++ SGK  +++ +L        RVLLF Q   ++ I+E +   + + YL++DG
Sbjct: 835  -------WKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDG 887

Query: 1099 TTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQD 1158
            TT    R  L+ ++NE  S  F+FLL+TR GGLG+NL  A+ VVI+D DWNP  D QA++
Sbjct: 888  TTTIASRQPLITRYNEDTS-IFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARE 946

Query: 1159 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1200
            RA RIGQ+ +V V RL T  ++EEKI     +K  +  +V++
Sbjct: 947  RAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLK 988



 Score = 35.8 bits (81), Expect = 0.34
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 1491 EEESEDESNEEE---EEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKP 1547
            E E + E  E E    EE+EEE + E +  +  +  +  D + +   KG KR  +   + 
Sbjct: 362  EAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGDGTDYELKPLPKGGKRQKKVPVQE 421

Query: 1548 VVSDF--DSDEEQDEREQSEGSG 1568
            +  DF   S EE +     EG G
Sbjct: 422  IDDDFFPSSGEEAEAASVGEGGG 444


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,905,479
Number of Sequences: 37866
Number of extensions: 4657854
Number of successful extensions: 127789
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 2359
Number of HSP's that attempted gapping in prelim test: 38386
Number of HSP's gapped (non-prelim): 47659
length of query: 1572
length of database: 18,247,518
effective HSP length: 116
effective length of query: 1456
effective length of database: 13,855,062
effective search space: 20172970272
effective search space used: 20172970272
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 69 (31.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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