Guide to the Human Genome
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Name: LOC100287510 Sequence: fasta or formatted (396aa) NCBI GI: 239745384
Description:

PREDICTED: hypothetical protein XP_002343452

Referenced in:

Inositol Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         29           2
 C cysteine            2.0          8           1
 D aspartate           4.5         18           2
 E glutamate           7.6         30           2
 F phenylalanine       4.8         19           2
 G glycine             7.1         28           2
 H histidine           2.3          9           1
 I isoleucine          5.1         20           2
 K lysine              7.1         28           2
 L leucine             9.6         38           2
 M methionine          1.5          6           1
 N asparagine          2.0          8           1
 P proline             7.8         31           3
 Q glutamine           3.8         15           2
 R arginine            6.3         25           1
 S serine              5.8         23           2
 T threonine           5.1         20           1
 V valine              5.1         20           2
 W tryptophan          1.5          6           2
 Y tyrosine            3.8         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343452 
PDPK1                 0.865   3-phosphoinositide dependent protein kinase-1 isoform...
LOC100293250          0.857   PREDICTED: similar to 3-phosphoinositide dependent ...
PDPK1                 0.333   3-phosphoinositide dependent protein kinase-1 isofor...
SGK1                  0.241   serum/glucocorticoid regulated kinase 1 isoform 1 [H...
SGK1                  0.241   serum/glucocorticoid regulated kinase 1 isoform 4 [...
SGK1                  0.241   serum/glucocorticoid regulated kinase 1 isoform 3 [...
SGK1                  0.241   serum/glucocorticoid regulated kinase 1 isoform 2 [...
PRKACB                0.239   cAMP-dependent protein kinase catalytic subunit beta ...
PRKACB                0.239   cAMP-dependent protein kinase catalytic subunit beta...
PRKX                  0.239   protein kinase, X-linked 
PRKACA                0.235   cAMP-dependent protein kinase catalytic subunit alph...
PRKACA                0.235   cAMP-dependent protein kinase catalytic subunit alpha...
PRKACG                0.230   protein kinase, cAMP-dependent, catalytic, gamma [Ho...
AKT2                  0.223   AKT2 kinase 
RPS6KB1               0.222   ribosomal protein S6 kinase, 70kDa, polypeptide 1 [Ho...
SGK2                  0.222   serum/glucocorticoid regulated kinase 2 isoform beta...
SGK2                  0.218   serum/glucocorticoid regulated kinase 2 isoform alph...
AKT3                  0.217   AKT3 kinase isoform 1 
AKT3                  0.217   AKT3 kinase isoform 2 
AKT1                  0.217   AKT1 kinase 
AKT1                  0.217   AKT1 kinase 
AKT1                  0.217   AKT1 kinase 
SGK3                  0.216   serum/glucocorticoid regulated kinase 3 isoform 1 [H...
SGK3                  0.216   serum/glucocorticoid regulated kinase 3 isoform 1 [H...
RPS6KA3               0.211   ribosomal protein S6 kinase, 90kDa, polypeptide 3 [Ho...
PRKCQ                 0.211   protein kinase C, theta 
PRKCA                 0.211   protein kinase C, alpha 
PRKCH                 0.210   protein kinase C, eta 
PRKCE                 0.210   protein kinase C, epsilon 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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