Guide to the Human Genome
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Name: PRKCI Sequence: fasta or formatted (596aa) NCBI GI: 133908623
Description:

protein kinase C, iota

Referenced in:

Inositol Pathways
PDZ Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         24           2
 C cysteine            2.9         17           1
 D aspartate           7.2         43           4
 E glutamate           7.7         46           2
 F phenylalanine       5.2         31           2
 G glycine             6.7         40           3
 H histidine           3.7         22           1
 I isoleucine          5.0         30           2
 K lysine              5.4         32           2
 L leucine             8.4         50           2
 M methionine          3.4         20           2
 N asparagine          3.7         22           1
 P proline             5.0         30           2
 Q glutamine           4.4         26           1
 R arginine            6.0         36           2
 S serine              7.2         43           3
 T threonine           3.9         23           2
 V valine              6.0         36           2
 W tryptophan          1.2          7           2
 Y tyrosine            3.0         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein kinase C, iota 
PRKCZ                 0.701   protein kinase C, zeta isoform 1 
PRKCZ                 0.497   protein kinase C, zeta isoform 2 
PRKCZ                 0.497   protein kinase C, zeta isoform 2 
PRKCE                 0.315   protein kinase C, epsilon 
PRKCH                 0.302   protein kinase C, eta 
PRKCA                 0.287   protein kinase C, alpha 
PRKCB                 0.283   protein kinase C, beta isoform 2 
PRKCB                 0.282   protein kinase C, beta isoform 1 
PRKCG                 0.268   protein kinase C, gamma 
PRKCD                 0.260   protein kinase C, delta 
PRKCD                 0.260   protein kinase C, delta 
PRKCQ                 0.256   protein kinase C, theta 
AKT2                  0.247   AKT2 kinase 
AKT3                  0.237   AKT3 kinase isoform 1 
AKT3                  0.237   AKT3 kinase isoform 2 
AKT1                  0.237   AKT1 kinase 
AKT1                  0.237   AKT1 kinase 
AKT1                  0.237   AKT1 kinase 
SGK3                  0.230   serum/glucocorticoid regulated kinase 3 isoform 1 [H...
SGK3                  0.230   serum/glucocorticoid regulated kinase 3 isoform 1 [H...
SGK2                  0.229   serum/glucocorticoid regulated kinase 2 isoform beta...
SGK2                  0.228   serum/glucocorticoid regulated kinase 2 isoform alph...
PKN2                  0.227   protein kinase N2 
SGK1                  0.222   serum/glucocorticoid regulated kinase 1 isoform 1 [H...
SGK1                  0.222   serum/glucocorticoid regulated kinase 1 isoform 4 [...
SGK1                  0.222   serum/glucocorticoid regulated kinase 1 isoform 3 [...
SGK1                  0.222   serum/glucocorticoid regulated kinase 1 isoform 2 [...
PKN1                  0.208   protein kinase N1 isoform 1 
PKN1                  0.208   protein kinase N1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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