Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: USP10 Sequence: fasta or formatted (798aa) NCBI GI: 119220605
Description:

ubiquitin specific protease 10

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         45           2
 C cysteine            1.4         11           1
 D aspartate           5.1         41           2
 E glutamate           7.4         59           3
 F phenylalanine       3.1         25           2
 G glycine             7.6         61           2
 H histidine           1.8         14           2
 I isoleucine          4.6         37           1
 K lysine              5.5         44           5
 L leucine             8.3         66           2
 M methionine          1.1          9           1
 N asparagine          4.0         32           1
 P proline             7.9         63           2
 Q glutamine           4.8         38           2
 R arginine            4.0         32           2
 S serine              9.4         75           4
 T threonine           6.9         55           2
 V valine              7.4         59           2
 W tryptophan          0.5          4           1
 Y tyrosine            3.5         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin specific protease 10 
USP8                  0.052   ubiquitin specific peptidase 8 
USP8                  0.052   ubiquitin specific peptidase 8 
USP8                  0.052   ubiquitin specific peptidase 8 
LOC728419             0.042   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728405             0.042   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728400             0.042   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728393             0.042   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728379             0.042   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728373             0.042   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728369             0.042   PREDICTED: similar to deubiquitinating enzyme 3 [Ho...
LOC100287441          0.042   PREDICTED: hypothetical protein XP_002342478 
LOC100287478          0.042   PREDICTED: hypothetical protein XP_002342479 
LOC100287205          0.042   PREDICTED: hypothetical protein XP_002342473 
LOC100287327          0.042   PREDICTED: hypothetical protein XP_002342475 
LOC728373             0.041   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
USP17L5               0.041   PREDICTED: Ubiquitin carboxyl-terminal hydrolase 17...
LOC100287513          0.041   PREDICTED: hypothetical protein XP_002342480 
LOC100287144          0.041   PREDICTED: hypothetical protein XP_002342471 
LOC728379             0.040   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
LOC100287404          0.040   PREDICTED: hypothetical protein XP_002342477 
LOC100287364          0.040   PREDICTED: hypothetical protein XP_002342476 
LOC100287178          0.040   PREDICTED: hypothetical protein XP_002342472 
LOC100288520          0.040   PREDICTED: hypothetical protein XP_002342486 
DUB3                  0.040   deubiquitinating enzyme 3 
LOC100287238          0.039   PREDICTED: hypothetical protein XP_002342474 
USP17L8               0.039   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
USP17                 0.039   ubiquitin specific peptidase 17 
USP42                 0.037   ubiquitin specific peptidase 42 
USP46                 0.037   ubiquitin specific peptidase 46 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press