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Search of human proteins with 4759258
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4759258 zinc finger, BED-type containing 1 [Homo sapiens]
(694 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4759258 zinc finger, BED-type containing 1 [Homo sapiens] 1397 0.0
gi|153791893 zinc finger, BED-type containing 4 [Homo sapiens] 143 6e-34
gi|124286830 zinc finger protein 618 [Homo sapiens] 41 0.004
gi|115511046 zinc finger protein 258 [Homo sapiens] 37 0.080
gi|22202611 carboxypeptidase D precursor [Homo sapiens] 34 0.52
gi|90669307 cyclin B3 isoform 3 [Homo sapiens] 33 0.89
gi|5032033 RNA binding motif protein 6 [Homo sapiens] 33 0.89
gi|58197558 tudor domain containing 6 [Homo sapiens] 33 1.2
gi|171906567 peripheral benzodiazepine receptor-associated prote... 32 1.5
gi|171906559 peripheral benzodiazepine receptor-associated prote... 32 1.5
gi|24432009 poly (ADP-ribose) polymerase family, member 8 [Homo ... 32 2.6
gi|242247257 WW and C2 domain containing 1 isoform 2 [Homo sapiens] 31 4.4
gi|242247251 WW and C2 domain containing 1 isoform 1 [Homo sapiens] 31 4.4
gi|148886716 downstream of Stk11 [Homo sapiens] 31 4.4
gi|154240686 FYVE, RhoGEF and PH domain containing 6 [Homo sapiens] 31 4.4
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 30 5.8
gi|4503355 dedicator of cytokinesis 1 [Homo sapiens] 30 5.8
gi|219879806 TRAF-type zinc finger domain containing 1 [Homo sap... 30 5.8
gi|5729828 TRAF-type zinc finger domain containing 1 [Homo sapiens] 30 5.8
gi|34452709 bromodomain containing 8 isoform 3 [Homo sapiens] 30 5.8
gi|34452705 bromodomain containing 8 isoform 1 [Homo sapiens] 30 5.8
gi|15718680 IL2-inducible T-cell kinase [Homo sapiens] 30 7.5
gi|90903231 huntingtin [Homo sapiens] 30 9.8
gi|239755085 PREDICTED: hypothetical protein [Homo sapiens] 30 9.8
gi|169176429 PREDICTED: hypothetical protein [Homo sapiens] 30 9.8
>gi|4759258 zinc finger, BED-type containing 1 [Homo sapiens]
Length = 694
Score = 1397 bits (3615), Expect = 0.0
Identities = 694/694 (100%), Positives = 694/694 (100%)
Query: 1 MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT 60
MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT
Sbjct: 1 MENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQIAYSGNT 60
Query: 61 SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS 120
SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS
Sbjct: 61 SNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGHGYDS 120
Query: 121 KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV 180
KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV
Sbjct: 121 KKQQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKAIPEKYGAV 180
Query: 181 REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE 240
REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE
Sbjct: 181 REVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSMGSRCLKTFEVPE 240
Query: 241 ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ 300
ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ
Sbjct: 241 ENTAETITRVLYEVFIEWGISAKVFGATTNYGKDIVKACSLLDVAVHMPCLGHTFNAGIQ 300
Query: 301 QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM 360
QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM
Sbjct: 301 QAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGSTLAM 360
Query: 361 LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS 420
LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS
Sbjct: 361 LQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRYPTIS 420
Query: 421 MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK 480
MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK
Sbjct: 421 MVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEIDMFLNVATFLDPRYK 480
Query: 481 RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP 540
RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP
Sbjct: 481 RLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPP 540
Query: 541 ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL 600
ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL
Sbjct: 541 ASVINNMLAEIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPL 600
Query: 601 LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE 660
LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE
Sbjct: 601 LPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQVFLYENARSGAEAEPE 660
Query: 661 DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL 694
DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL
Sbjct: 661 DQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSFL 694
>gi|153791893 zinc finger, BED-type containing 4 [Homo sapiens]
Length = 1171
Score = 143 bits (360), Expect = 6e-34
Identities = 166/679 (24%), Positives = 281/679 (41%), Gaps = 79/679 (11%)
Query: 4 KSLESSQTDLKLVA----------HPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQ 53
+S S TDL V + + SK+W +F C K+ C C
Sbjct: 532 ESSSSKLTDLPTVVTKNNQVMFPVNSKKTSKLWNHFSI------CSADSTKVVCLHCGRT 585
Query: 54 IAYSGNTSNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVK 113
I+ +NL H + F V TE A ++ P ++ G +
Sbjct: 586 ISRGKKPTNLGTSCLLRHLQRFHSNVLK-TEVSETARPSSPDTRVPRGTELSGASSFDDT 644
Query: 114 AGHGYDSKK-QQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKA 172
YDS +++T+ + +I L P S VD F LL+ P+Y LP+ Y S A
Sbjct: 645 NEKFYDSHPVAKKITSLIAEMIALDLQPYSFVDNVGFNRLLEYLKPQYSLPAPSYFSRTA 704
Query: 173 IPEKYGAVREVILKEL--AEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAP------- 223
IP Y V+++I+ L AE+ ++ +W S NQ R Y+TL AH++ +P
Sbjct: 705 IPGMYDNVKQIIMSHLKEAESGVIHFTSGIWMS-NQTREYLTLTAHWVSFESPARPRCDD 763
Query: 224 -NCLSMGSRCLKTFEVPEENTAETITRVLYEVFIEWGISAKV-FGATTNYGKDIVKACSL 281
+C S L +V + + +I + L + W S + G T I K
Sbjct: 764 HHC----SALLDVSQVDCDYSGNSIQKQLECWWEAWVTSTGLQVGITVTDNASIGKT--- 816
Query: 282 LDVAVH--MPCLGHTFNAGIQQAFQLPKL-GALLSRCRKLVEYFQQSAVAMYMLYEKQKQ 338
L+ H + C HT N + +A + ++ LLS RK+ E +S A L E Q++
Sbjct: 817 LNEGEHSSVQCFSHTVNLIVSEAIKSQRMVQNLLSLARKICERVHRSPKAKEKLAELQRE 876
Query: 339 QNVAHCMLVSNRVSWWGSTLAMLQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLV 398
+ L+ + S W ++ ML+RL EQ+ I + VE N ++ +W ++ +
Sbjct: 877 YALPQHHLIQDVPSKWSTSFHMLERLIEQKRAINEMSVE--CNFRELISCDQWEVMQSVC 934
Query: 399 ELLQPFKQVAEMLSASRYPTISMVKPLLH-------MLLNTTLNIKETDSKELSMAKEVI 451
L+PF+ + +S ++ T+S V P++H ML T+ I L KE +
Sbjct: 935 RALKPFEAASREMS-TQMSTLSQVIPMVHILNRKVEMLFEETMGI----DTMLRSLKEAM 989
Query: 452 AKELSKTYQETPEIDMFLNVATFLDPRYKRLPFLSAFERQQVENRVVEEAKGLLDKVKDG 511
LS T + + AT LDPRYK F E +Q + ++ E + L++
Sbjct: 990 VSRLSATLHDPRYV-----FATLLDPRYKASLFTEE-EAEQYKQDLIRELE-LMNSTS-- 1040
Query: 512 GYRPAEDKIFPVPEEPPVKKLMRTSTPPPASVINNMLAEIFCQTGGVEDQEEWHAQVVEE 571
E+ +P S L + + + +E+ +V
Sbjct: 1041 -------------EDVAASHRCDAGSPSKDSAAEENLWSLVAKVKKKDPREKLPEAMV-- 1085
Query: 572 LSNFKSQKVLGLNEDPLKWWSDRLALFPLLPKVLQKYWCVTATRVAPERLFGSAANVVSA 631
+ ++VL + DPL +W+ + A +P L + ++ + V E+LF + S
Sbjct: 1086 -LAYLEEEVLEHSCDPLTYWNLKKASWPGLSALAVRFLGCPPSIVPSEKLFNTPTENGSL 1144
Query: 632 KRNRLAPAHVDEQVFLYEN 650
++RL H ++ +FL N
Sbjct: 1145 GQSRLMMEHFEKLIFLKVN 1163
>gi|124286830 zinc finger protein 618 [Homo sapiens]
Length = 861
Score = 40.8 bits (94), Expect = 0.004
Identities = 56/259 (21%), Positives = 103/259 (39%), Gaps = 40/259 (15%)
Query: 394 IEGLVELLQPFKQVAEMLSASRYPTISMVKPLLHMLLNTTLNIKETDSKELSMAKEVIAK 453
+ L +L P KQ LS PT+ +V P ++ L K D+ +S + +
Sbjct: 639 LSNLAAILTPVKQAVIELSNESQPTLQLVLP-TYVRLEKLFTAKANDAGTVSKLCHLFLE 697
Query: 454 ELSKTYQETPEIDMFLNVATFLDPRYKRLPFLSAFERQQVENRVVEEAKGLLDKVKDGGY 513
L + ++ P VA LDP+ K P + ++ +++ +V E L+++VK+
Sbjct: 698 ALKENFKVHPA----HKVAMILDPQQKLRP-VPPYQHEEIIGKVCE----LINEVKESW- 747
Query: 514 RPAEDKIFPVPEEPPVKKLMRTSTPPPASVINNMLAEIFCQTGGVEDQEEWHAQVVEELS 573
AE+ F EP KK + PA+ ++ L + E+
Sbjct: 748 --AEEADF----EPAAKKPRSAAVENPAAQEDDRLGK-------------------NEVY 782
Query: 574 NFKSQKVLGLNEDPLKWWSDRLALFPLLPKVLQKYWCVTATRV-APERLFGSAANVVSAK 632
++ + + D ++WS L K+ +W + V A + K
Sbjct: 783 DYLQEPLFQATPDLFQYWSCVTQKHTKLAKL--AFWLLAVPAVGARSGCVNMCEQALLIK 840
Query: 633 RNR-LAPAHVDEQVFLYEN 650
R R L+P +++ +FL N
Sbjct: 841 RRRLLSPEDMNKLMFLKSN 859
>gi|115511046 zinc finger protein 258 [Homo sapiens]
Length = 1325
Score = 36.6 bits (83), Expect = 0.080
Identities = 80/411 (19%), Positives = 156/411 (37%), Gaps = 45/411 (10%)
Query: 6 LESSQTDLKLVAHPRAKSKVWKYFGFDTN--------AEGCILQWKKIYCRICMAQIAYS 57
+ + + D +L + P K ++ + +DT G + C IC +I S
Sbjct: 719 MPNEKNDAELDSPPSKKKRLGFFQTYDTEYLKVGFIICPGSKESSPRPQCVIC-GEILSS 777
Query: 58 GNT--SNLSYHLEKNHPE---EFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAV 112
N +NLS+HL+ H E + +F + + +M ++ L E S +A
Sbjct: 778 ENMKPANLSHHLKTKHSELENKPVDFFEQKSLEMECQNSSLKKCLLVEKSLVKASYLIAF 837
Query: 113 KAGHGYDSKKQ----QELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYI 168
+ SKK +EL L +C + +S D+ +KT +P
Sbjct: 838 QTAA---SKKPFSIAEELIKPYLVEMCSEVLGSSAGDK------MKT------IPLSNVT 882
Query: 169 STKAIPEKYGAVREVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCLSM 228
I E + + +++++ E+ W + D E+ + +TL ++ +C +
Sbjct: 883 IQHRIDELSADIEDQLIQKVRESKWFALQID----ESSEISNITLLLCYIRFIDYDCRDV 938
Query: 229 GSRCLKTFEVPEENTA----ETITRVLYEVFIEWG--ISAKVFGATTNYGKDIVKACSLL 282
L E+P + T E I + + + W + GA + G+ +
Sbjct: 939 KEELLFCIEMPTQITGFEIFELINKYIDSKSLNWKHCVGLCTDGAASMTGRYSGLKAKIQ 998
Query: 283 DVAVHMPCLGHTF--NAGIQQAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQN 340
+VA++ H F + P L +L + +++ + + +A+ ML ++
Sbjct: 999 EVAMNTAAFTHCFIHRERLVAEKLSPCLHKILLQSAQILSFIKSNALNSRMLTILCEEMG 1058
Query: 341 VAHCMLVSNRVSWWGSTLAMLQRLKEQQFVIAGVLVEDSNNHHLMLEASEW 391
H L + W S ML+RL E + I L + ++ EW
Sbjct: 1059 SEHVSLPLHAEVRWISRGRMLKRLFELRHEIEIFLSQKHSDLAKYFHDEEW 1109
>gi|22202611 carboxypeptidase D precursor [Homo sapiens]
Length = 1380
Score = 33.9 bits (76), Expect = 0.52
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 453 KELSKTYQETPEIDMFLNVATFLDPRYKRLPFLSAFERQQVENRVVEEAKGLLDKVKDGG 512
K+ S TY PEI ++ + F P RLP L A ++ + + +VE KG+ VKD
Sbjct: 1166 KDYSVTYGHCPEITVYTSCCYF--PSAARLPSLWADNKRSLLSMLVEVHKGVHGFVKDKT 1223
Query: 513 YRPAEDKIFPVPE 525
+P + + E
Sbjct: 1224 GKPISKAVIVLNE 1236
>gi|90669307 cyclin B3 isoform 3 [Homo sapiens]
Length = 1395
Score = 33.1 bits (74), Expect = 0.89
Identities = 61/255 (23%), Positives = 103/255 (40%), Gaps = 22/255 (8%)
Query: 407 VAEMLSASRYPTISMVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKELSKTYQETPEID 466
+A M S + TI+ M+ TLN K T KELS KE +A + S T +E D
Sbjct: 991 IATMTSVGKSGTINEAFLFEDMI---TLNEKPTTGKELSF-KEPLALQESPTCKE----D 1042
Query: 467 MFLNVATFLDPRYKRLPFLSAFERQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEE 526
FL TFL P+ P++ + + + + + K + A + P
Sbjct: 1043 TFLE--TFLIPQIGTSPYVFSTTPESITEKSSIATMTSVGKSRTTTESSACESASDKPVS 1100
Query: 527 PPVKKLMRTSTP-------PPASVINNMLA-EIFCQTGGVEDQ---EEWHAQVVEELSNF 575
P K + TP N M A EIF E+Q ++ + +E S+
Sbjct: 1101 PQAKGTPKEITPREDIDEDSSDPSFNPMYAKEIFSYMKEREEQFILTDYMNRQIEITSDM 1160
Query: 576 KSQKVLGLNEDPLKWWSDRLALFPLLPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNR 635
++ V L E + + L+ L K++ Y + +L G+ A +++AK
Sbjct: 1161 RAILVDWLVEVQVSFEMTHETLY-LAVKLVDLYLMKAVCKKDKLQLLGATAFMIAAKFEE 1219
Query: 636 LAPAHVDEQVFLYEN 650
VD+ V++ ++
Sbjct: 1220 HNSPRVDDFVYICDD 1234
>gi|5032033 RNA binding motif protein 6 [Homo sapiens]
Length = 1123
Score = 33.1 bits (74), Expect = 0.89
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 512 GYRPAEDKIFPVPEEPPVKKLMRTSTPPPASVINNMLAEIFCQTGGVEDQEE 563
G PAED +F P P VKK +PPP V+N ++ + + GG D EE
Sbjct: 870 GKAPAED-VFKKPLPPTVKK---EESPPPPKVVNPLIG-LLGEYGGDSDYEE 916
>gi|58197558 tudor domain containing 6 [Homo sapiens]
Length = 2096
Score = 32.7 bits (73), Expect = 1.2
Identities = 38/138 (27%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 490 RQQVENRVVEEAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPPASVINNMLA 549
RQ E+RV +G G P + F +P E V+ +LA
Sbjct: 89 RQAQESRVFLLDEGRTITAGAGSLAPGRREFFNLPSE----------------VLGCVLA 132
Query: 550 EIF---CQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWWSDRLALFPLLPKVLQ 606
+ C G E + W A V+ LSN + ++V G D L RL L +P V Q
Sbjct: 133 GLVPAGCGAGSGEPPQHWPADAVDFLSNLQGKEVHGCVLDVL--LLHRLVLLE-VPDVFQ 189
Query: 607 KYWCVTATRVAPERLFGS 624
+ + R P+ LF S
Sbjct: 190 QMRELGLARRVPDSLFRS 207
>gi|171906567 peripheral benzodiazepine receptor-associated protein 1
isoform b [Homo sapiens]
Length = 1797
Score = 32.3 bits (72), Expect = 1.5
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 48 RICMAQIAYSGNTSNLSYHLEKNHPEEFCEFVKSNT--EQMREAFATAFSKLK----PES 101
R C Q +GN+ + + K+ P+ FCE EQ+ E F K PE
Sbjct: 1218 RTCSFQKQVAGNS--IRENGAKSQPDPFCETDSDEEILEQILELPLQQFCSKKLFSIPEE 1275
Query: 102 SQQPGQDALAVKAGHGYDSKKQQELTAAVLGLICEGLYP 140
++ +D K+G G S+ A+LGL C+ P
Sbjct: 1276 EEEEEEDEEEEKSGAGCSSRDPGPPEPALLGLGCDSGQP 1314
>gi|171906559 peripheral benzodiazepine receptor-associated protein 1
isoform a [Homo sapiens]
Length = 1857
Score = 32.3 bits (72), Expect = 1.5
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 48 RICMAQIAYSGNTSNLSYHLEKNHPEEFCEFVKSNT--EQMREAFATAFSKLK----PES 101
R C Q +GN+ + + K+ P+ FCE EQ+ E F K PE
Sbjct: 1278 RTCSFQKQVAGNS--IRENGAKSQPDPFCETDSDEEILEQILELPLQQFCSKKLFSIPEE 1335
Query: 102 SQQPGQDALAVKAGHGYDSKKQQELTAAVLGLICEGLYP 140
++ +D K+G G S+ A+LGL C+ P
Sbjct: 1336 EEEEEEDEEEEKSGAGCSSRDPGPPEPALLGLGCDSGQP 1374
>gi|24432009 poly (ADP-ribose) polymerase family, member 8 [Homo
sapiens]
Length = 854
Score = 31.6 bits (70), Expect = 2.6
Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 29/193 (15%)
Query: 70 NHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKAGH-------GYDSKK 122
++P C KS + ++ + L+ S D + V H D +
Sbjct: 291 SYPPPGCGKSKSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCVTKSHRTFGRSLSSDPRA 350
Query: 123 QQELTAAVLGLICEGLYPASIVDEP-----TFKVLLKTA--DPRYE---------LPSRK 166
+Q +TA + PA++ E + ++L ++ DPR E L SR
Sbjct: 351 EQAMTAIKSHKLLNRPCPAAVKSEECLTLKSHRLLTRSCSGDPRCEHNTNLKPHKLLSRS 410
Query: 167 YISTKAIPEKYGAVREVILKELAEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAPNCL 226
Y S + E YG +L + + T++++ N ++L + +G+ P+
Sbjct: 411 YSSNLRMEELYGLKNHKLLSKSYSSAPKSSKTELFKEPNAEGRRLSLTSGLIGILTPSSS 470
Query: 227 SM------GSRCL 233
S G++C+
Sbjct: 471 SSSQLAPNGAKCI 483
>gi|242247257 WW and C2 domain containing 1 isoform 2 [Homo sapiens]
Length = 1118
Score = 30.8 bits (68), Expect = 4.4
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 531 KLMRTSTPPPASVINNMLAEIFCQTG-----GVEDQEEWHAQVVEELSNFKS-----QKV 580
++ R S PP S + ++ +E +T ++ WH+Q+ +E+S K ++
Sbjct: 969 RMKRPSPPPQPSSVKSLRSERLIRTSLDLELDLQATRTWHSQLTQEISVLKELKEQLEQA 1028
Query: 581 LGLNEDPLKWWSDRLALFPLLPKVLQK 607
E L W F LL ++L+K
Sbjct: 1029 KSHGEKELPQWLREDERFRLLLRMLEK 1055
>gi|242247251 WW and C2 domain containing 1 isoform 1 [Homo sapiens]
Length = 1119
Score = 30.8 bits (68), Expect = 4.4
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 531 KLMRTSTPPPASVINNMLAEIFCQTG-----GVEDQEEWHAQVVEELSNFKS-----QKV 580
++ R S PP S + ++ +E +T ++ WH+Q+ +E+S K ++
Sbjct: 969 RMKRPSPPPQPSSVKSLRSERLIRTSLDLELDLQATRTWHSQLTQEISVLKELKEQLEQA 1028
Query: 581 LGLNEDPLKWWSDRLALFPLLPKVLQK 607
E L W F LL ++L+K
Sbjct: 1029 KSHGEKELPQWLREDERFRLLLRMLEK 1055
>gi|148886716 downstream of Stk11 [Homo sapiens]
Length = 447
Score = 30.8 bits (68), Expect = 4.4
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 495 NRVVEEAKGLLDKVKDGGYRPAEDKIF----PVPEEPPVKKLMRTSTPPPASVINNMLAE 550
NR +EEA+ D G PA+D F P ++ ++ + TS+ N A
Sbjct: 75 NRAMEEAEKTTTTYLDNGTHPAQDPDFRGEDPECQDAETERFLSTSSTGRRVSFNE--AA 132
Query: 551 IFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLK 589
+F Q+ +D+ + + + K+ ++ L+ PLK
Sbjct: 133 LFEQSRKTQDKGRRYTLTEGDFHHLKNARLTHLHLPPLK 171
>gi|154240686 FYVE, RhoGEF and PH domain containing 6 [Homo sapiens]
Length = 1430
Score = 30.8 bits (68), Expect = 4.4
Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 16/137 (11%)
Query: 3 NKSLESSQTDLKLVAHPR-AKSKVWKYFGFDTNAEGCI-------LQWKKIYCRICMAQI 54
++SL+ + ++ K P +K+ +W DT A C+ L W++ +CR C +
Sbjct: 1195 SRSLDEADSENKEEVSPLGSKAPIWIP---DTRATMCMICTSEFTLTWRRHHCRACGKIV 1251
Query: 55 AYSGNTSNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVKA 114
+ +++ KN P CE +++ + P + + P +V
Sbjct: 1252 CQACSSNKYGLDYLKNQPARVCEHCFQELQKLDHQHSPRIG--SPGNHKSPSSALSSVL- 1308
Query: 115 GHGYDS-KKQQELTAAV 130
H S +KQ+++ AA+
Sbjct: 1309 -HSIPSGRKQKKIPAAL 1324
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 30.4 bits (67), Expect = 5.8
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 481 RLPFLSAFERQQVENRVVEEAKGLLD-KVKDGGYRP---------AEDKIFPVPEEPPVK 530
RL L+A E + +VE+AK D K ++G P A D P P PP
Sbjct: 1135 RLKELAALEAAAKQQELVEQAKSSQDVKGEEGSAAPDQHTHPKEAATDP--PAPRTPPEP 1192
Query: 531 KLMRTSTPPPASV 543
S+PPPAS+
Sbjct: 1193 PGSPPSSPPPASL 1205
>gi|4503355 dedicator of cytokinesis 1 [Homo sapiens]
Length = 1865
Score = 30.4 bits (67), Expect = 5.8
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 4 KSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMA----------- 52
K L + D+KLV P+ SK+ + F N +L +K+YC I +
Sbjct: 799 KYLPTIVNDVKLVFDPKELSKM--FTEFILNVPMGLLTIQKLYCLIEIVHSDLFTQHDCR 856
Query: 53 QIAYSGNTSNLSYHLEKNHPEEFC 76
+I T L YHLE+ E C
Sbjct: 857 EILLPMMTDQLKYHLERQEDLEAC 880
>gi|219879806 TRAF-type zinc finger domain containing 1 [Homo
sapiens]
Length = 582
Score = 30.4 bits (67), Expect = 5.8
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 24/149 (16%)
Query: 535 TSTPPPASVINNMLA---EIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWW 591
TS PP+ INNM A ++ T G + + V +LSN SQ + G N D
Sbjct: 446 TSCLPPSRPINNMTATYNQLSRSTSGPRPGCQPSSPCVPKLSNSDSQDIQGRNRD----- 500
Query: 592 SDRLALFP------LLPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQV 645
S A+ P P+ L V + P +G++ + +R+ PA
Sbjct: 501 SQNGAIAPGHVSVIRPPQNLYPENIVPSFSPGPSGRYGASGRSEGGRNSRVTPAAA---- 556
Query: 646 FLYENARS-GAEAEPEDQDEGEWGLDQEQ 673
N RS A+A+P Q +G ++E+
Sbjct: 557 ----NYRSRTAKAKPSKQ-QGAGDAEEEE 580
>gi|5729828 TRAF-type zinc finger domain containing 1 [Homo sapiens]
Length = 582
Score = 30.4 bits (67), Expect = 5.8
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 24/149 (16%)
Query: 535 TSTPPPASVINNMLA---EIFCQTGGVEDQEEWHAQVVEELSNFKSQKVLGLNEDPLKWW 591
TS PP+ INNM A ++ T G + + V +LSN SQ + G N D
Sbjct: 446 TSCLPPSRPINNMTATYNQLSRSTSGPRPGCQPSSPCVPKLSNSDSQDIQGRNRD----- 500
Query: 592 SDRLALFP------LLPKVLQKYWCVTATRVAPERLFGSAANVVSAKRNRLAPAHVDEQV 645
S A+ P P+ L V + P +G++ + +R+ PA
Sbjct: 501 SQNGAIAPGHVSVIRPPQNLYPENIVPSFSPGPSGRYGASGRSEGGRNSRVTPAAA---- 556
Query: 646 FLYENARS-GAEAEPEDQDEGEWGLDQEQ 673
N RS A+A+P Q +G ++E+
Sbjct: 557 ----NYRSRTAKAKPSKQ-QGAGDAEEEE 580
>gi|34452709 bromodomain containing 8 isoform 3 [Homo sapiens]
Length = 757
Score = 30.4 bits (67), Expect = 5.8
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 512 GYRPAEDKIFPVPEEPPVKKLM-RTSTPPPASVINNML 548
G P E + PV ++ P KK++ + +TPPP+ +++ +L
Sbjct: 98 GSAPLEAPMTPVTDDSPQKKMLGQKATPPPSPLLSELL 135
>gi|34452705 bromodomain containing 8 isoform 1 [Homo sapiens]
Length = 951
Score = 30.4 bits (67), Expect = 5.8
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 512 GYRPAEDKIFPVPEEPPVKKLM-RTSTPPPASVINNML 548
G P E + PV ++ P KK++ + +TPPP+ +++ +L
Sbjct: 238 GSAPLEAPMTPVTDDSPQKKMLGQKATPPPSPLLSELL 275
>gi|15718680 IL2-inducible T-cell kinase [Homo sapiens]
Length = 620
Score = 30.0 bits (66), Expect = 7.5
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 316 RKLVEYFQQSAVAMYMLYEKQKQQ-----NVAHCMLVSNRVSWWGSTLAMLQRLKEQQFV 370
R L E + +A+Y Q+ N +C+L S+ + WW + R + +V
Sbjct: 166 RPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWW----RVQDRNGHEGYV 221
Query: 371 IAGVLVEDSNNHHLMLEASEW 391
+ LVE S N+ LE EW
Sbjct: 222 PSSYLVEKSPNN---LETYEW 239
>gi|90903231 huntingtin [Homo sapiens]
Length = 3144
Score = 29.6 bits (65), Expect = 9.8
Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 338 QQNVAHCMLVSNRVSWWGSTLAMLQRLKEQQFVIAGVLVEDSNNHHLMLEASEWAT--IE 395
Q V +C+L S++V + G L + ++ QF + ++ + ++L + + I
Sbjct: 1459 QLRVNYCLLDSDQV-FIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKQII 1517
Query: 396 GLVELLQPFKQVAEMLSASRYPTISMVKPLLHMLLNTTLNIKETDSKELSMAKEVIAKEL 455
G+ +++Q + + I ++P++H L K KEL KEV+ L
Sbjct: 1518 GIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVVVSML 1577
Query: 456 SKTYQETPEIDMFLNV 471
+ Q ++MF+ V
Sbjct: 1578 LRLIQYHQVLEMFILV 1593
>gi|239755085 PREDICTED: hypothetical protein [Homo sapiens]
Length = 310
Score = 29.6 bits (65), Expect = 9.8
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Query: 515 PAEDKIFPVPEEPPVKKLMRTSTPPPASVINNMLAEIFCQTGGVEDQEE 563
P+ K+ P+P PP K +RT P A + + G VE QE+
Sbjct: 120 PSSKKLIPIPARPPNKTKVRTQEEPRA---------VIEEEGQVETQEQ 159
>gi|169176429 PREDICTED: hypothetical protein [Homo sapiens]
Length = 310
Score = 29.6 bits (65), Expect = 9.8
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Query: 515 PAEDKIFPVPEEPPVKKLMRTSTPPPASVINNMLAEIFCQTGGVEDQEE 563
P+ K+ P+P PP K +RT P A + + G VE QE+
Sbjct: 120 PSSKKLIPIPARPPNKTKVRTQEEPRA---------VIEEEGQVETQEQ 159
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,609,182
Number of Sequences: 37866
Number of extensions: 1136634
Number of successful extensions: 3191
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3173
Number of HSP's gapped (non-prelim): 34
length of query: 694
length of database: 18,247,518
effective HSP length: 109
effective length of query: 585
effective length of database: 14,120,124
effective search space: 8260272540
effective search space used: 8260272540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.