Guide to the Human Genome
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Name: TMPRSS11F Sequence: fasta or formatted (438aa) NCBI GI: 194018492
Description:

transmembrane protease, serine 11F

Referenced in:

Serine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         25           2
 C cysteine            1.8          8           1
 D aspartate           4.6         20           2
 E glutamate           4.8         21           1
 F phenylalanine       4.1         18           1
 G glycine             6.4         28           2
 H histidine           2.1          9           1
 I isoleucine          9.1         40           2
 K lysine              6.6         29           3
 L leucine             6.8         30           2
 M methionine          2.5         11           2
 N asparagine          3.7         16           1
 P proline             4.3         19           2
 Q glutamine           4.3         19           2
 R arginine            5.9         26           1
 S serine              9.1         40           3
 T threonine           6.2         27           1
 V valine              6.6         29           2
 W tryptophan          2.1          9           1
 Y tyrosine            3.2         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protease, serine 11F 
TMPRSS11A             0.384   transmembrane protease, serine 11A isoform 2 
TMPRSS11A             0.379   transmembrane protease, serine 11A isoform 1 
TMPRSS11E2            0.377   transmembrane protease, serine 11E2 
TMPRSS11E             0.377   transmembrane protease, serine 11E 
TMPRSS11D             0.358   transmembrane protease, serine 11D 
TMPRSS11B             0.343   transmembrane protease, serine 11B 
TMPRSS2               0.213   transmembrane protease, serine 2 isoform 1 
TMPRSS2               0.213   transmembrane protease, serine 2 isoform 2 
PRSS7                 0.198   enterokinase precursor 
HPN                   0.198   hepsin 
HPN                   0.198   hepsin 
TMPRSS3               0.198   transmembrane protease, serine 3 isoform 1 
ST14                  0.195   matriptase 
KLKB1                 0.190   plasma kallikrein B1 precursor 
TMPRSS4               0.188   transmembrane protease, serine 4 isoform 1 
TMPRSS4               0.187   transmembrane protease, serine 4 isoform 3 
TMPRSS9               0.187   transmembrane protease, serine 9 
ACR                   0.186   acrosin precursor 
F11                   0.185   coagulation factor XI precursor 
PRSS33                0.181   protease, serine, 33 
TMPRSS5               0.181   transmembrane protease, serine 5 
TMPRSS7               0.180   transmembrane protease, serine 7 
TMPRSS6               0.179   transmembrane protease, serine 6 
PRSS21                0.177   testisin isoform 2 
PRSS27                0.174   marapsin 
PRSS21                0.174   testisin isoform 1 
OVCH1                 0.172   ovochymase 1 
TMPRSS13              0.172   transmembrane protease, serine 13 
PRSS22                0.172   protease, serine, 22 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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