Guide to the Human Genome
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Name: TMPRSS12 Sequence: fasta or formatted (348aa) NCBI GI: 32698940
Description:

transmembrane protease, serine 12

Referenced in:

Serine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         25           2
 C cysteine            3.2         11           1
 D aspartate           4.0         14           1
 E glutamate           4.0         14           2
 F phenylalanine       4.3         15           2
 G glycine            10.3         36           2
 H histidine           4.0         14           1
 I isoleucine          8.0         28           3
 K lysine              4.3         15           2
 L leucine             8.6         30           2
 M methionine          1.4          5           1
 N asparagine          3.2         11           2
 P proline             4.6         16           1
 Q glutamine           3.2         11           2
 R arginine            6.6         23           4
 S serine              6.3         22           2
 T threonine           5.5         19           2
 V valine              5.5         19           2
 W tryptophan          1.7          6           1
 Y tyrosine            4.0         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protease, serine 12 
PRSS7                 0.228   enterokinase precursor 
ACR                   0.227   acrosin precursor 
TMPRSS11D             0.227   transmembrane protease, serine 11D 
TMPRSS9               0.217   transmembrane protease, serine 9 
PLG                   0.217   plasminogen 
TMPRSS2               0.215   transmembrane protease, serine 2 isoform 1 
TMPRSS2               0.215   transmembrane protease, serine 2 isoform 2 
HPN                   0.215   hepsin 
HPN                   0.215   hepsin 
KLKB1                 0.213   plasma kallikrein B1 precursor 
TMPRSS4               0.204   transmembrane protease, serine 4 isoform 3 
TMPRSS4               0.204   transmembrane protease, serine 4 isoform 1 
TMPRSS11B             0.201   transmembrane protease, serine 11B 
TMPRSS6               0.201   transmembrane protease, serine 6 
TMPRSS3               0.201   transmembrane protease, serine 3 isoform 1 
ST14                  0.201   matriptase 
LOC100293486          0.198   PREDICTED: similar to hCG2041452 
LOC100291379          0.198   PREDICTED: hypothetical protein XP_002346556 
LOC100288960          0.198   PREDICTED: hypothetical protein XP_002342392 
TESSP1                0.197   testis-specific serine protease 1 
PRSS8                 0.195   prostasin preproprotein 
TMPRSS13              0.195   transmembrane protease, serine 13 
PRSS27                0.194   marapsin 
CORIN                 0.191   corin 
TMPRSS11F             0.191   transmembrane protease, serine 11F 
LPA                   0.188   lipoprotein Lp(a) precursor 
TMPRSS5               0.188   transmembrane protease, serine 5 
OVCH1                 0.188   ovochymase 1 
TMPRSS11E             0.187   transmembrane protease, serine 11E 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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