Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HGFAC Sequence: fasta or formatted (655aa) NCBI GI: 4504383
Description:

HGF activator preproprotein

Referenced in:

Coagulation
Fibronectin Family
Serine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         53           3
 C cysteine            6.0         39           1
 D aspartate           4.6         30           1
 E glutamate           4.4         29           1
 F phenylalanine       2.9         19           2
 G glycine            10.1         66           2
 H histidine           3.1         20           1
 I isoleucine          2.7         18           2
 K lysine              2.3         15           3
 L leucine             8.7         57          10
 M methionine          0.5          3           1
 N asparagine          2.7         18           1
 P proline             9.5         62           4
 Q glutamine           2.7         18           1
 R arginine            6.6         43           2
 S serine              8.5         56           4
 T threonine           5.8         38           2
 V valine              5.2         34           2
 W tryptophan          2.3         15           1
 Y tyrosine            3.4         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   HGF activator preproprotein 
F12                   0.312   coagulation factor XII precursor 
HABP2                 0.203   hyaluronan binding protein 2 preproprotein 
PLAT                  0.194   plasminogen activator, tissue isoform 3 preproprotei...
PLAT                  0.193   plasminogen activator, tissue isoform 1 preproprotein...
PLAU                  0.181   plasminogen activator, urokinase isoform 1 preproprot...
PLAU                  0.181   plasminogen activator, urokinase isoform 2 
PLG                   0.132   plasminogen 
LPA                   0.115   lipoprotein Lp(a) precursor 
PRSS8                 0.115   prostasin preproprotein 
TMPRSS5               0.112   transmembrane protease, serine 5 
TMPRSS3               0.102   transmembrane protease, serine 3 isoform 1 
TMPRSS9               0.101   transmembrane protease, serine 9 
KLKB1                 0.099   plasma kallikrein B1 precursor 
TMPRSS6               0.099   transmembrane protease, serine 6 
HGF                   0.097   hepatocyte growth factor isoform 3 precursor 
HGF                   0.097   hepatocyte growth factor isoform 1 preproprotein [Ho...
PRSS7                 0.097   enterokinase precursor 
F11                   0.097   coagulation factor XI precursor 
PROC                  0.095   protein C 
PRSS33                0.095   protease, serine, 33 
PRSS22                0.095   protease, serine, 22 
TMPRSS13              0.095   transmembrane protease, serine 13 
F2                    0.094   coagulation factor II preproprotein 
TMPRSS2               0.094   transmembrane protease, serine 2 isoform 1 
TMPRSS2               0.094   transmembrane protease, serine 2 isoform 2 
MST1                  0.094   macrophage stimulating 1 (hepatocyte growth factor-...
TMPRSS7               0.094   transmembrane protease, serine 7 
TMPRSS11B             0.094   transmembrane protease, serine 11B 
PRSS12                0.093   neurotrypsin precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press