Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 47519699
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47519699 microtubule-associated protein 4 isoform 3 [Homo
sapiens]
(99 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47519699 microtubule-associated protein 4 isoform 3 [Homo sap... 198 7e-52
gi|197276600 microtubule-associated protein 4 isoform 4 [Homo sa... 195 7e-51
gi|47519639 microtubule-associated protein 4 isoform 1 [Homo sap... 195 7e-51
gi|31377566 ring finger protein 168 [Homo sapiens] 30 0.54
gi|47132529 suppression of tumorigenicity 5 isoform 1 [Homo sapi... 29 0.92
gi|47132532 suppression of tumorigenicity 5 isoform 1 [Homo sapi... 29 0.92
gi|21264614 suppression of tumorigenicity 5 isoform 2 [Homo sapi... 29 0.92
gi|126090892 aggrecan isoform 2 precursor [Homo sapiens] 28 1.2
gi|126090883 aggrecan isoform 1 precursor [Homo sapiens] 28 1.2
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 28 2.0
gi|148747864 JAW1-related protein isoform a [Homo sapiens] 27 2.7
gi|154091334 JAW1-related protein isoform c [Homo sapiens] 27 2.7
gi|154091332 JAW1-related protein isoform b [Homo sapiens] 27 2.7
gi|148728182 JAW1-related protein isoform b [Homo sapiens] 27 2.7
gi|225543215 antigen identified by monoclonal antibody Ki-67 iso... 27 3.5
gi|103472005 antigen identified by monoclonal antibody Ki-67 iso... 27 3.5
gi|28372531 protein phosphatase 4, regulatory subunit 2 [Homo sa... 27 4.6
gi|55741709 RNA binding motif protein 25 [Homo sapiens] 26 6.0
gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens] 26 6.0
gi|110349788 absent, small, or homeotic 1-like [Homo sapiens] 26 6.0
gi|28559039 mediator complex subunit 1 [Homo sapiens] 26 6.0
gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ... 26 6.0
gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s... 26 6.0
gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa... 26 6.0
gi|126723547 hypothetical protein LOC57523 [Homo sapiens] 26 6.0
gi|9558729 golgi associated, gamma adaptin ear containing, ARF b... 26 6.0
gi|44955929 calmodulin regulated spectrin-associated protein 1-l... 26 6.0
gi|24432032 zinc finger protein 503 [Homo sapiens] 26 7.8
>gi|47519699 microtubule-associated protein 4 isoform 3 [Homo
sapiens]
Length = 99
Score = 198 bits (504), Expect = 7e-52
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MADLSLADALTEPSPDIEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNS 60
MADLSLADALTEPSPDIEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNS
Sbjct: 1 MADLSLADALTEPSPDIEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNS 60
Query: 61 ESKKKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTEA 99
ESKKKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTEA
Sbjct: 61 ESKKKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTEA 99
>gi|197276600 microtubule-associated protein 4 isoform 4 [Homo
sapiens]
Length = 1135
Score = 195 bits (495), Expect = 7e-51
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MADLSLADALTEPSPDIEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNS 60
MADLSLADALTEPSPDIEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNS
Sbjct: 1 MADLSLADALTEPSPDIEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNS 60
Query: 61 ESKKKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTT 97
ESKKKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTT
Sbjct: 61 ESKKKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTT 97
>gi|47519639 microtubule-associated protein 4 isoform 1 [Homo
sapiens]
Length = 1152
Score = 195 bits (495), Expect = 7e-51
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MADLSLADALTEPSPDIEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNS 60
MADLSLADALTEPSPDIEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNS
Sbjct: 1 MADLSLADALTEPSPDIEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNS 60
Query: 61 ESKKKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTT 97
ESKKKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTT
Sbjct: 61 ESKKKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTT 97
>gi|31377566 ring finger protein 168 [Homo sapiens]
Length = 571
Score = 29.6 bits (65), Expect = 0.54
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 22 KRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNSESKKKPCSETSQIEDTPSSKP 81
K F + +EA +V ++V K D+D S +K P + ++IED P+ P
Sbjct: 232 KSQFGSASHSEAVQEVRKDSVSK-------DID-----SSDRKSPTGQDTEIEDMPTLSP 279
Query: 82 TLLANGGHGVEGSDTT 97
+ + G G +G+D++
Sbjct: 280 QI--SLGVGEQGADSS 293
>gi|47132529 suppression of tumorigenicity 5 isoform 1 [Homo
sapiens]
Length = 1137
Score = 28.9 bits (63), Expect = 0.92
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 3 DLSLADALTEPSPD---IEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGN 59
D S +L SP E + K +TLE A++D+VG+ + P DVD K+
Sbjct: 454 DASSLQSLYPSSPTENGTENQPKFGSKSTLEENAYEDIVGDLPKEN---PYEDVDLKSRR 510
Query: 60 SESKKKPCSETS 71
+ K + SE S
Sbjct: 511 AGRKSQQLSENS 522
>gi|47132532 suppression of tumorigenicity 5 isoform 1 [Homo
sapiens]
Length = 1137
Score = 28.9 bits (63), Expect = 0.92
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 3 DLSLADALTEPSPD---IEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGN 59
D S +L SP E + K +TLE A++D+VG+ + P DVD K+
Sbjct: 454 DASSLQSLYPSSPTENGTENQPKFGSKSTLEENAYEDIVGDLPKEN---PYEDVDLKSRR 510
Query: 60 SESKKKPCSETS 71
+ K + SE S
Sbjct: 511 AGRKSQQLSENS 522
>gi|21264614 suppression of tumorigenicity 5 isoform 2 [Homo
sapiens]
Length = 717
Score = 28.9 bits (63), Expect = 0.92
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 3 DLSLADALTEPSPD---IEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGN 59
D S +L SP E + K +TLE A++D+VG+ + P DVD K+
Sbjct: 34 DASSLQSLYPSSPTENGTENQPKFGSKSTLEENAYEDIVGDLPKEN---PYEDVDLKSRR 90
Query: 60 SESKKKPCSETS 71
+ K + SE S
Sbjct: 91 AGRKSQQLSENS 102
>gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]
Length = 2416
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 14 SPDIEGEIKRDFIATLEAEAFDDVVGETVGKTD 46
SPD+ GEI F + + F D GET G T+
Sbjct: 1608 SPDVSGEIPGLFGVSGQPSGFPDTSGETSGVTE 1640
>gi|126090883 aggrecan isoform 1 precursor [Homo sapiens]
Length = 2317
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 14 SPDIEGEIKRDFIATLEAEAFDDVVGETVGKTD 46
SPD+ GEI F + + F D GET G T+
Sbjct: 1608 SPDVSGEIPGLFGVSGQPSGFPDTSGETSGVTE 1640
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 12 EPSPDIEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNSESKKKPCSETS 71
E + D+EGE + I L+ +D T ++ P + ++ T E P E
Sbjct: 395 EGADDLEGEFTEETIRNLDENYYDPYYDPTSSPSEIGPGMPANQDT-IYEGIGGPRGEKG 453
Query: 72 QIEDTPSSKPTLLANGGHGVEG 93
Q + +P +L G G EG
Sbjct: 454 QKGEPAIIEPGMLIEGPPGPEG 475
>gi|148747864 JAW1-related protein isoform a [Homo sapiens]
Length = 903
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 20 EIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNSESKKKP--CSETSQIEDTP 77
E+ ++ A +E EA+ E + KT + L +E+ SES ++P ET + E P
Sbjct: 761 ELSQETKARMEEEAYSKGFQEGLKKTKELQDLKEEEEEQKSESPEEPEEVEETEEEEKGP 820
Query: 78 SS 79
S
Sbjct: 821 RS 822
>gi|154091334 JAW1-related protein isoform c [Homo sapiens]
Length = 597
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 20 EIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNSESKKKP--CSETSQIEDTP 77
E+ ++ A +E EA+ E + KT + L +E+ SES ++P ET + E P
Sbjct: 455 ELSQETKARMEEEAYSKGFQEGLKKTKELQDLKEEEEEQKSESPEEPEEVEETEEEEKGP 514
Query: 78 SS 79
S
Sbjct: 515 RS 516
>gi|154091332 JAW1-related protein isoform b [Homo sapiens]
Length = 821
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 20 EIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNSESKKKP--CSETSQIEDTP 77
E+ ++ A +E EA+ E + KT + L +E+ SES ++P ET + E P
Sbjct: 679 ELSQETKARMEEEAYSKGFQEGLKKTKELQDLKEEEEEQKSESPEEPEEVEETEEEEKGP 738
Query: 78 SS 79
S
Sbjct: 739 RS 740
>gi|148728182 JAW1-related protein isoform b [Homo sapiens]
Length = 821
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 20 EIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNSESKKKP--CSETSQIEDTP 77
E+ ++ A +E EA+ E + KT + L +E+ SES ++P ET + E P
Sbjct: 679 ELSQETKARMEEEAYSKGFQEGLKKTKELQDLKEEEEEQKSESPEEPEEVEETEEEEKGP 738
Query: 78 SS 79
S
Sbjct: 739 RS 740
>gi|225543215 antigen identified by monoclonal antibody Ki-67 isoform
2 [Homo sapiens]
Length = 2896
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 13 PSPDIEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNSESKKKPCSETSQ 72
P+ + G +R A+A +D+ G + D+KT K PC + +
Sbjct: 2416 PAASVTGSRRRPRAPRESAQAIEDLAGFKDPAAGHTEESMTDDKT-----TKIPCKSSPE 2470
Query: 73 IEDTPSS 79
+EDT +S
Sbjct: 2471 LEDTATS 2477
>gi|103472005 antigen identified by monoclonal antibody Ki-67 isoform
1 [Homo sapiens]
Length = 3256
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 13 PSPDIEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNSESKKKPCSETSQ 72
P+ + G +R A+A +D+ G + D+KT K PC + +
Sbjct: 2776 PAASVTGSRRRPRAPRESAQAIEDLAGFKDPAAGHTEESMTDDKT-----TKIPCKSSPE 2830
Query: 73 IEDTPSS 79
+EDT +S
Sbjct: 2831 LEDTATS 2837
>gi|28372531 protein phosphatase 4, regulatory subunit 2 [Homo
sapiens]
Length = 417
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 16 DIEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNSESKKKPCSETSQIED 75
D EGE++ T +E +VGET + +K +S ++ C+E + ED
Sbjct: 251 DKEGEVRETASQTTSSEISSVMVGETEASS------SSQDKDKDSRCTRQHCTEEDEEED 304
Query: 76 TPSSKPTLLAN 86
+ + + +
Sbjct: 305 EEEEEESFMTS 315
>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
Length = 843
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 54 DEKTGNSESKKKPCSETSQIEDTPSSKPTL 83
+EK E +++P E + E P KPTL
Sbjct: 588 EEKQEKEEKREEPMEEEEEPEQKPCLKPTL 617
>gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens]
Length = 2382
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 21 IKRDFIATLEAEAFDDVVGETVGKTDYIPLLDV 53
+ DFI +E E+F D V E + K D + DV
Sbjct: 1164 VNNDFILAIERESFVDQVREIIEKADEMLSEDV 1196
>gi|110349788 absent, small, or homeotic 1-like [Homo sapiens]
Length = 2964
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 55 EKTGNSESKKKPCSET--SQIEDTPSSKPTLLANGGHGVE 92
E T S ++K+ SE+ S + PS P L+A+G V+
Sbjct: 1676 ESTNCSPTRKRSSSESTSSTVNGVPSRSPRLVASGDDSVD 1715
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 43 GKTDYIPLLDVDEKTGNSESKKKPCSETSQIEDTPSSKPTLLANGGHGVEGSD 95
GK P+ +G+S +K KP + S + + SKP + + GSD
Sbjct: 1151 GKPGSSPITKHGLSSGSSSTKMKPQGKPSSLMNPSLSKPNISPSHSRPPGGSD 1203
>gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo
sapiens]
Length = 1188
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 56 KTGNSESKKKPCSETSQIED 75
KT NSE K CS S+ ED
Sbjct: 685 KTANSEGKSDSCSSDSETED 704
>gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo
sapiens]
Length = 1203
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 56 KTGNSESKKKPCSETSQIED 75
KT NSE K CS S+ ED
Sbjct: 685 KTANSEGKSDSCSSDSETED 704
>gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo
sapiens]
Length = 1257
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 56 KTGNSESKKKPCSETSQIED 75
KT NSE K CS S+ ED
Sbjct: 685 KTANSEGKSDSCSSDSETED 704
>gi|126723547 hypothetical protein LOC57523 [Homo sapiens]
Length = 1898
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 58 GNSESKKKPCSETSQIEDTPSSKPTLLANGGHGVEGS 94
G+S+ K K S+ QI +S P L A G G +GS
Sbjct: 464 GSSDVKDKVSSDLPQIGPPLTSTPQLQAGGEPGDQGS 500
>gi|9558729 golgi associated, gamma adaptin ear containing, ARF
binding protein 1 isoform 1 [Homo sapiens]
Length = 639
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Query: 56 KTGNSESKKKPCSETSQIED----------TPSSKPTLLANGGHGVEGSDTTE 98
+ G S ++P + S ++D TP S P+L G + + SD TE
Sbjct: 340 RPGEQASPEQPSASVSLLDDELMSLGLSDPTPPSGPSLDGTGWNSFQSSDATE 392
>gi|44955929 calmodulin regulated spectrin-associated protein 1-like
1 [Homo sapiens]
Length = 1478
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 50 LLDVDEKTGNSESKKKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTTE 98
L D D +TGN+ PC T + P S A+ GV+ + E
Sbjct: 647 LQDYDIRTGNTREALSPCPSTVSTKSQPGSS----ASSSSGVKMTSFAE 691
>gi|24432032 zinc finger protein 503 [Homo sapiens]
Length = 646
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 51 LDVDEKTGNSESKKKPCSETSQIEDTPSSKPTLLANGGHGVEGS 94
+++D K + CS+ + + +PSSK + +A+ G G G+
Sbjct: 104 IELDAKKSPLALLAQTCSQIGKPDPSPSSKLSSVASNGGGAGGA 147
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.303 0.127 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,848,261
Number of Sequences: 37866
Number of extensions: 154243
Number of successful extensions: 326
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 31
length of query: 99
length of database: 18,247,518
effective HSP length: 70
effective length of query: 29
effective length of database: 15,596,898
effective search space: 452310042
effective search space used: 452310042
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.