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Search of human proteins with 47458036
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47458036 hereditary sensory neuropathy, type II [Homo
sapiens]
(434 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47458036 hereditary sensory neuropathy, type II [Homo sapiens] 890 0.0
gi|239750235 PREDICTED: hypothetical protein [Homo sapiens] 36 0.078
gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo ... 36 0.078
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 35 0.10
gi|239735575 otoancorin isoform 3 [Homo sapiens] 33 0.66
gi|24638452 otoancorin isoform 2 [Homo sapiens] 33 0.66
gi|77404409 otoancorin isoform 1 [Homo sapiens] 33 0.66
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 33 0.66
gi|4758168 distal-less homeobox 2 [Homo sapiens] 32 0.86
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 32 0.86
gi|15529996 son of sevenless homolog 1 [Homo sapiens] 32 1.1
gi|9257222 forkhead box O1 [Homo sapiens] 32 1.5
gi|157419150 protein tyrosine phosphatase, receptor type, M isof... 32 1.5
gi|157419152 protein tyrosine phosphatase, receptor type, M isof... 32 1.5
gi|4503611 ets variant 6 [Homo sapiens] 31 1.9
gi|25121980 dispatched B [Homo sapiens] 31 2.5
gi|163965366 nascent polypeptide-associated complex alpha subuni... 31 2.5
gi|88957790 PREDICTED: hypothetical protein LOC389043 [Homo sapi... 30 3.3
gi|33356170 myosin IXB isoform 1 [Homo sapiens] 30 3.3
gi|116875765 tight junction protein 1 isoform b [Homo sapiens] 30 4.3
gi|83367077 mucin 16 [Homo sapiens] 30 4.3
gi|21361146 zinc finger protein 76 (expressed in testis) [Homo s... 30 4.3
gi|112421108 capicua homolog [Homo sapiens] 30 4.3
gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens] 30 5.6
gi|78000167 sorbin and SH3 domain containing 1 isoform 5 [Homo s... 30 5.6
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 30 5.6
gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo s... 30 5.6
gi|7661700 sorbin and SH3 domain containing 1 isoform 2 [Homo sa... 30 5.6
gi|197276670 spermatogenesis and centriole associated 1 isoform ... 30 5.6
gi|197276668 spermatogenesis and centriole associated 1 isoform ... 30 5.6
>gi|47458036 hereditary sensory neuropathy, type II [Homo sapiens]
Length = 434
Score = 890 bits (2301), Expect = 0.0
Identities = 434/434 (100%), Positives = 434/434 (100%)
Query: 1 MYELLVLFMLIQPQSMAHPCGGTPTYPESQIFFPTIHERPVSFSPPPTCPPKVAISQRRK 60
MYELLVLFMLIQPQSMAHPCGGTPTYPESQIFFPTIHERPVSFSPPPTCPPKVAISQRRK
Sbjct: 1 MYELLVLFMLIQPQSMAHPCGGTPTYPESQIFFPTIHERPVSFSPPPTCPPKVAISQRRK 60
Query: 61 STSFLEAQTHHFQPLLRTVGQSLLPPGGSPTNWTPEAVVMLGTTASRVTGESCEIQVHPM 120
STSFLEAQTHHFQPLLRTVGQSLLPPGGSPTNWTPEAVVMLGTTASRVTGESCEIQVHPM
Sbjct: 61 STSFLEAQTHHFQPLLRTVGQSLLPPGGSPTNWTPEAVVMLGTTASRVTGESCEIQVHPM 120
Query: 121 FEPSQVYSDYRPGLVLPEEAHYFIPQEAVYVAGVHYQARVAEQYEGIPYNSSVLSSPMKQ 180
FEPSQVYSDYRPGLVLPEEAHYFIPQEAVYVAGVHYQARVAEQYEGIPYNSSVLSSPMKQ
Sbjct: 121 FEPSQVYSDYRPGLVLPEEAHYFIPQEAVYVAGVHYQARVAEQYEGIPYNSSVLSSPMKQ 180
Query: 181 IPEQKPVQGGPTSSSVFEFPSGQAFLVGHLQNLRLDSGLGPGSPLSSISAPISTDATRLK 240
IPEQKPVQGGPTSSSVFEFPSGQAFLVGHLQNLRLDSGLGPGSPLSSISAPISTDATRLK
Sbjct: 181 IPEQKPVQGGPTSSSVFEFPSGQAFLVGHLQNLRLDSGLGPGSPLSSISAPISTDATRLK 240
Query: 241 FHPVFVPHSAPAVLTHNNESRSNCVFEFHVHTPSSSSGEGGGILPQRVYRNRQVAVDLNQ 300
FHPVFVPHSAPAVLTHNNESRSNCVFEFHVHTPSSSSGEGGGILPQRVYRNRQVAVDLNQ
Sbjct: 241 FHPVFVPHSAPAVLTHNNESRSNCVFEFHVHTPSSSSGEGGGILPQRVYRNRQVAVDLNQ 300
Query: 301 EELPPQSVGLHGYLQPVTEEKHNYHAPELTVSVVEPIGQNWPIGSPEYSSDSSQITSSDP 360
EELPPQSVGLHGYLQPVTEEKHNYHAPELTVSVVEPIGQNWPIGSPEYSSDSSQITSSDP
Sbjct: 301 EELPPQSVGLHGYLQPVTEEKHNYHAPELTVSVVEPIGQNWPIGSPEYSSDSSQITSSDP 360
Query: 361 SDFQSPPPTGGAAAPFGSDVSMPFIHLPQTVLQESPLFFCFPQGTTSQQVLTASFSSGGS 420
SDFQSPPPTGGAAAPFGSDVSMPFIHLPQTVLQESPLFFCFPQGTTSQQVLTASFSSGGS
Sbjct: 361 SDFQSPPPTGGAAAPFGSDVSMPFIHLPQTVLQESPLFFCFPQGTTSQQVLTASFSSGGS 420
Query: 421 ALHPQVIGKLPQLF 434
ALHPQVIGKLPQLF
Sbjct: 421 ALHPQVIGKLPQLF 434
>gi|239750235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 35.8 bits (81), Expect = 0.078
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 345 SPEYSSDSSQITSSDPSDFQSPPPTGGAAAPFGSDVSMPFIHLPQTVLQESPLFFCFPQG 404
SP YSS SS +SS P PPP+ ++ S S PF+ L PLFF
Sbjct: 183 SPSYSSPSSSPSSSSPLPPPPPPPSFSSS----SSSSFPFLLL-------LPLFFLLLLS 231
Query: 405 TTSQQVLTASFSSGGSAL 422
+ S ++S SS AL
Sbjct: 232 SFSSSTFSSSSSSSFPAL 249
>gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo
sapiens]
Length = 257
Score = 35.8 bits (81), Expect = 0.078
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 345 SPEYSSDSSQITSSDPSDFQSPPPTGGAAAPFGSDVSMPFIHLPQTVLQESPLFFCFPQG 404
SP YSS SS +SS P PPP+ ++ S S PF+ L PLFF
Sbjct: 183 SPSYSSPSSSPSSSSPLPPPPPPPSFSSS----SSSSFPFLLL-------LPLFFLLLLS 231
Query: 405 TTSQQVLTASFSSGGSAL 422
+ S ++S SS AL
Sbjct: 232 SFSSSTFSSSSSSSFPAL 249
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 35.4 bits (80), Expect = 0.10
Identities = 61/227 (26%), Positives = 84/227 (37%), Gaps = 34/227 (14%)
Query: 27 PESQIFFPTIHERPVSFSPPPTCPPKVAISQRRKSTSFLEAQTHHFQPLLRTVGQSLL-- 84
PES F P + E P+S PP PP A+ PL +S L
Sbjct: 507 PESSPFSP-LEESPLS--PPEESPPSPALETPLSPPP-------EASPLSPPFEESPLSP 556
Query: 85 PPGGSPTNWTPEAVVMLGTTASRVTGESCEIQVHPMFEPSQVYSDYRPGLVLPEEAHYFI 144
PP PT+ PEA SR++ E + P E S P PE + F
Sbjct: 557 PPEELPTSPPPEA--------SRLSPPPEESPMSPPPEES-------PMSPPPEASRLFP 601
Query: 145 PQEAVYVAGVHYQARVAEQYEGIPYNSSVLSSPMKQIPEQKPVQGGPTSSSVFEFPSGQA 204
P E ++ ++ ++ E + SPM PE+ P+ P S + P
Sbjct: 602 PFEESPLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRLSPLP---- 657
Query: 205 FLVGHLQNLRLDSGLGPGSPLSSISAPISTDATRLKFHPVFVPHSAP 251
+V L +S L P S S P +A+RL P P S P
Sbjct: 658 -VVSRLSPPPEESPLSPPPEESPTSPP--PEASRLSPPPEDSPTSPP 701
>gi|239735575 otoancorin isoform 3 [Homo sapiens]
Length = 1060
Score = 32.7 bits (73), Expect = 0.66
Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 16/124 (12%)
Query: 88 GSPTNWTPEAVVMLGTTASRVTGESCEI---QVHPMFEPSQVYSDYRPGLVLPEEAHYFI 144
G PT WT + LGT A+ +T + + P F+PS + LP+E +
Sbjct: 922 GDPTEWTSSVLQELGTIAAGLTKAELRMLDKDLMPYFQPSAI-------KCLPDEIFKEL 974
Query: 145 PQEAVYVAGVHYQARV--AEQYEGIPYNSSVLSSPMKQIP----EQKPVQGGPTSSSVFE 198
E + G A V A++ P L + + P GPT +S
Sbjct: 975 SAEQIASLGPENAAAVTHAQRRRLSPLQLQSLQQALDGAKTHSWQDAPASAGPTRTSSSR 1034
Query: 199 FPSG 202
P+G
Sbjct: 1035 SPAG 1038
>gi|24638452 otoancorin isoform 2 [Homo sapiens]
Length = 815
Score = 32.7 bits (73), Expect = 0.66
Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 16/124 (12%)
Query: 88 GSPTNWTPEAVVMLGTTASRVTGESCEI---QVHPMFEPSQVYSDYRPGLVLPEEAHYFI 144
G PT WT + LGT A+ +T + + P F+PS + LP+E +
Sbjct: 677 GDPTEWTSSVLQELGTIAAGLTKAELRMLDKDLMPYFQPSAI-------KCLPDEIFKEL 729
Query: 145 PQEAVYVAGVHYQARV--AEQYEGIPYNSSVLSSPMKQIP----EQKPVQGGPTSSSVFE 198
E + G A V A++ P L + + P GPT +S
Sbjct: 730 SAEQIASLGPENAAAVTHAQRRRLSPLQLQSLQQALDGAKTHSWQDAPASAGPTRTSSSR 789
Query: 199 FPSG 202
P+G
Sbjct: 790 SPAG 793
>gi|77404409 otoancorin isoform 1 [Homo sapiens]
Length = 1139
Score = 32.7 bits (73), Expect = 0.66
Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 16/124 (12%)
Query: 88 GSPTNWTPEAVVMLGTTASRVTGESCEI---QVHPMFEPSQVYSDYRPGLVLPEEAHYFI 144
G PT WT + LGT A+ +T + + P F+PS + LP+E +
Sbjct: 1001 GDPTEWTSSVLQELGTIAAGLTKAELRMLDKDLMPYFQPSAI-------KCLPDEIFKEL 1053
Query: 145 PQEAVYVAGVHYQARV--AEQYEGIPYNSSVLSSPMKQIP----EQKPVQGGPTSSSVFE 198
E + G A V A++ P L + + P GPT +S
Sbjct: 1054 SAEQIASLGPENAAAVTHAQRRRLSPLQLQSLQQALDGAKTHSWQDAPASAGPTRTSSSR 1113
Query: 199 FPSG 202
P+G
Sbjct: 1114 SPAG 1117
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 32.7 bits (73), Expect = 0.66
Identities = 88/381 (23%), Positives = 129/381 (33%), Gaps = 73/381 (19%)
Query: 9 MLIQPQSMAHPCGGTPTYPESQIFFPTIHERPVSFSPPPTCPPKVAISQRRKSTSFLEAQ 68
+ +QP A P TP P ++P + PP P+ A +A
Sbjct: 619 LTVQPAPQAPPAVSTP--------LPLGLQQPQAQQPPQAPTPQAAAPP--------QAT 662
Query: 69 THHFQPLLRTVGQSLLPPGGSPTNWTPEAVVMLGTTASRVTGESCEIQVHPMFEPSQVYS 128
T P L + + ++ G P + TP A++ T +S ++ + P Q S
Sbjct: 663 TPQPSPGLASSPEKIVL--GQPPSATPTAIL---------TQDSLQMFL-PQERSQQPLS 710
Query: 129 DYRPGLVLPEEAHYFIPQEAVYVAGVHYQARVAEQYEGIPYNSSVLSSPMKQIPEQKPVQ 188
P L +P P A A A+ A P +S +P QIP P++
Sbjct: 711 AEGPHLSVPASVIVSAPPPAQDPAPATPVAKGAGLGPQAP-DSQASPAPAPQIPAAAPLK 769
Query: 189 G-GPTSSSVFEFPSGQAFLVGHLQNLRLDSGLGPGSPLSSISAPISTDATRLKFHPVFVP 247
G GP+SS + +G +L P S S +S + HP P
Sbjct: 770 GPGPSSSPSLPHQAP----LGDSPHLPSPHPTRPPSRPPSRPQSVSRPPSEPPLHPCPPP 825
Query: 248 HSAPAVLTHNNESRSNCVFEFHVHTPSSSSGEGGGILPQRVYRNRQVAVDLNQEELPPQS 307
+ P + V + + P +S A Q L PQS
Sbjct: 826 QAPPTL-------PGIFVIQNQLGVPPPASNPA------------PTAPGPPQPPLRPQS 866
Query: 308 VGLHGYLQPVTEEKHNYHAPELTVSVVEPIGQNWPIGSPEYSSDSSQITSSDPSDFQSP- 366
G L P + P T S V S SS++ + PSDFQ
Sbjct: 867 QPPEGPLPPAP-----HLPPSSTSSAV-----------ASSSETSSRLPAPTPSDFQLQF 910
Query: 367 PPTGGAAAPFGSDVSMPFIHL 387
PP+ G P S P +HL
Sbjct: 911 PPSQG---PHKSPTPPPTLHL 928
>gi|4758168 distal-less homeobox 2 [Homo sapiens]
Length = 328
Score = 32.3 bits (72), Expect = 0.86
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 352 SSQITSSDPSDFQSPPPTGGAAAPFGSDVSMPFIHLPQTVLQESP 396
S+QI +S PP+GG A P G+ S +H P QESP
Sbjct: 14 STQIAASSTYHQHQQPPSGGGAGPGGNSSSSSSLHKP----QESP 54
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 32.3 bits (72), Expect = 0.86
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 357 SSDPSDFQSPPPTGGAAAP------FGSDVSMPFIHLPQTVLQ-------ESPLFFCFPQ 403
SS S +PPPTGG P F S PF T L+ SP + P+
Sbjct: 1013 SSAHSAGYAPPPTGGPCLPPSKASFFSSSEGAPFSGSAPTPLRCDSRASTVSPGGYMVPK 1072
Query: 404 GTTSQQVLTASFSSGGSA 421
GTT+ AS +S S+
Sbjct: 1073 GTTASATSAASAASSSSS 1090
>gi|15529996 son of sevenless homolog 1 [Homo sapiens]
Length = 1333
Score = 32.0 bits (71), Expect = 1.1
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 346 PEYSSDSSQITSSDPSDFQSPPPTGGAAAP------FGSDVSMPFIHLPQTVLQESPLFF 399
PE ++S+ + P +PPP GA++ F SD S PF TV + L
Sbjct: 1069 PESETESTASAPNSPRTPLTPPPASGASSTTDVCSVFDSDHSSPFHSSNDTVFIQVTL-- 1126
Query: 400 CFPQGTTSQQVLTASFSSG 418
P G S V + S + G
Sbjct: 1127 --PHGPRSASVSSISLTKG 1143
>gi|9257222 forkhead box O1 [Homo sapiens]
Length = 655
Score = 31.6 bits (70), Expect = 1.5
Identities = 21/87 (24%), Positives = 34/87 (39%)
Query: 336 PIGQNWPIGSPEYSSDSSQITSSDPSDFQSPPPTGGAAAPFGSDVSMPFIHLPQTVLQES 395
P WP+ PE+S +S +S PS + P A P S ++ + L E
Sbjct: 20 PRSCTWPLPRPEFSQSNSATSSPAPSGSAAANPDAAAGLPSASAAAVSADFMSNLSLLEE 79
Query: 396 PLFFCFPQGTTSQQVLTASFSSGGSAL 422
F G+ + V A+ ++ L
Sbjct: 80 SEDFPQAPGSVAAAVAAAAAAAATGGL 106
>gi|157419150 protein tyrosine phosphatase, receptor type, M isoform 2
precursor [Homo sapiens]
Length = 1452
Score = 31.6 bits (70), Expect = 1.5
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 122 EPSQVYSDYRPGLVLPEE-AHYFIPQEAVYVAGVHYQARVAEQYE-------GIPYNSSV 173
+ +++Y D + L+ E A Y I AV GVH + R Q+ G+PY+++
Sbjct: 1014 DDTEIYKDIKVTLIETELLAEYVIRTFAVEKRGVH-EIREIRQFHFTGWPDHGVPYHATG 1072
Query: 174 LSSPMKQIPEQKPVQGGP 191
L ++Q+ + P GP
Sbjct: 1073 LLGFVRQVKSKSPPSAGP 1090
>gi|157419152 protein tyrosine phosphatase, receptor type, M isoform 1
precursor [Homo sapiens]
Length = 1465
Score = 31.6 bits (70), Expect = 1.5
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 122 EPSQVYSDYRPGLVLPEE-AHYFIPQEAVYVAGVHYQARVAEQYE-------GIPYNSSV 173
+ +++Y D + L+ E A Y I AV GVH + R Q+ G+PY+++
Sbjct: 1027 DDTEIYKDIKVTLIETELLAEYVIRTFAVEKRGVH-EIREIRQFHFTGWPDHGVPYHATG 1085
Query: 174 LSSPMKQIPEQKPVQGGP 191
L ++Q+ + P GP
Sbjct: 1086 LLGFVRQVKSKSPPSAGP 1103
>gi|4503611 ets variant 6 [Homo sapiens]
Length = 452
Score = 31.2 bits (69), Expect = 1.9
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 191 PTSSSVFEFPSGQAFLVGHLQNLRLDSGLGPGSPLSSISAPISTDATRLKFHPVFVP--- 247
P S+ FE +G+A L+ ++ R S + + R+ F P F P
Sbjct: 81 PIDSNTFEM-NGKALLLLTKEDFRYRSPHSGDVLYELLQHILKQRKPRILFSPFFHPGNS 139
Query: 248 -HSAPAVLTHNNESRSNCV 265
H+ P V+ H N NCV
Sbjct: 140 IHTQPEVILHQNHEEDNCV 158
>gi|25121980 dispatched B [Homo sapiens]
Length = 1401
Score = 30.8 bits (68), Expect = 2.5
Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 20/91 (21%)
Query: 342 PIGSPEYSSDSSQITSSDPSDFQSPPPTGGAAAPFGSDVSMPFIHLPQTVLQESPLFFCF 401
P SPE S DPS PPPT P G P + L +P F +
Sbjct: 48 PEASPERSCSLHSCPLEDPSSSSGPPPTTSTLQPVG----------PSSPL--APAHFTY 95
Query: 402 P------QGTTSQQVL--TASFSSGGSALHP 424
P QG +S L A+ S GS+L P
Sbjct: 96 PRALQEYQGGSSLPGLGDRAALCSHGSSLSP 126
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 30.8 bits (68), Expect = 2.5
Identities = 79/377 (20%), Positives = 131/377 (34%), Gaps = 50/377 (13%)
Query: 10 LIQPQSMAHPCGGTPTYPESQIFFPTIHERPVSFSPPPTCPPKVAISQRRKSTSFLEAQT 69
+I+ S A P P +S + PT+ P+ + P P A K TS T
Sbjct: 620 VIKTDSYAGPDSAGPLL-KSSLITPTVAAFPLESADPAGVAPTTA-----KGTS---TYT 670
Query: 70 HHFQPLLRTVGQSLLPPGGSPTNWTPEAVVMLGTTASRVTGESCEIQVHPMFEPSQVYSD 129
P L G L P P + L TAS E+C + P + + +
Sbjct: 671 TTASPFLE--GTVSLAPKNHPVKEGTLTTLPLVPTAS----ENCPVAPSPQNTCAPLAT- 723
Query: 130 YRPGLVLPEEAHYFIPQEAVYVAGVHYQARVAEQYEGIPYNSSVLSSPMKQIPEQKPVQG 189
LVL E +P ++ AG + + +GI + S++ +P+ P++ P +
Sbjct: 724 ----LVLAPEIPKSVPSPSLPPAGTPPGTK---KVDGISHTSAL--APVASSPKECPTED 774
Query: 190 GPTSSSVFE-----------FPSGQAFLVGHLQNLRLDSGLGPGSPLSSISAPISTDATR 238
S++ P G + + GP +P+ ++S+P+S
Sbjct: 775 SGASATASSKGTLTYLADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVS----- 829
Query: 239 LKFHPVFVPHSAPAVLTHNNESRSNCVFEFHVHTPSSSSGEGGGILPQRVYRNRQVAVDL 298
F+P ++ L+ S H+P+ S +G P V V L
Sbjct: 830 -PVEASFLPENS---LSFQGSKDSPAT----THSPTPPSPKGAP-TPSAVTPLSPKGVTL 880
Query: 299 NQEELPPQSVGLHGYLQPVTEEKHNYHAPELTVSVVEPIGQNWPIGSPEYSSDSSQITSS 358
+E P SV + + AP L+++ P + S +
Sbjct: 881 PPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAP 940
Query: 359 DPSDFQSPPPTGGAAAP 375
P P P GG A P
Sbjct: 941 TPPAATPPSPKGGPATP 957
>gi|88957790 PREDICTED: hypothetical protein LOC389043 [Homo
sapiens]
Length = 108
Score = 30.4 bits (67), Expect = 3.3
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 58 RRKSTSFLEAQTHHFQPLLRTVGQSLLPPGGSPTNWTPEAVVMLGTTASRVTGESCEIQV 117
RRKST Q +LR + PG P+ T E + +L + R+ SC V
Sbjct: 13 RRKSTV---RQLSFRDVVLRCRPHPQVHPGSQPSEGTME-IQLLTLGSRRIPDHSC---V 65
Query: 118 HPMFEPSQVYSDYRPG 133
HP EPS+ + D+ G
Sbjct: 66 HPGREPSEDFRDHLEG 81
>gi|33356170 myosin IXB isoform 1 [Homo sapiens]
Length = 2157
Score = 30.4 bits (67), Expect = 3.3
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 17/104 (16%)
Query: 40 PVSFSPPPTCPPKVAISQRRKSTSF--LEAQTHHFQPLLRTVGQSLLPPGGSPTN---WT 94
P +P P+ P VA RR+ +SF + +T P++ T L P G P++ W
Sbjct: 2027 PCPGAPTPSPLPTVAAPPRRRPSSFVTVRVKTPRRTPIMPTANIKL--PPGLPSHLPRWA 2084
Query: 95 PEAVVMLGTTASRVTGESCEIQVHPMFEPSQVYSDY-RPGLVLP 137
P A R + P P Q++S Y PG LP
Sbjct: 2085 PGA---------REAAAPVRRREPPARRPDQIHSVYITPGADLP 2119
>gi|116875765 tight junction protein 1 isoform b [Homo sapiens]
Length = 1668
Score = 30.0 bits (66), Expect = 4.3
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 269 HVHTPSSSSGEGGGILPQRVYRNRQVAVDLNQEELPPQSVGLHGYLQPVTEEKHNYHAPE 328
H + EGG Y ++++ LN E P + +PV E+ H
Sbjct: 839 HTSDYEDTDTEGGA------YTDQELDETLNDEVGTPPESAITRSSEPVREDSSGMHHEN 892
Query: 329 LTVSVVEPIGQNWP---IGSPEYSSDSSQITSSDP 360
T P Q P I SP + S Q+ DP
Sbjct: 893 QTYPPYSPQAQPQPIHRIDSPGFKPASQQVYRKDP 927
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 30.0 bits (66), Expect = 4.3
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 171 SSVLSSPMKQIP-EQKPVQGGPTSSSVFEFPSGQAFLVGHLQNLRLDSGLGPGSPLSSIS 229
+S L+S +++I Q+ S+S+ P+G V + L L PG S+IS
Sbjct: 8703 TSSLTSGLREISTSQETSSATERSASLSGMPTGATTKVSRTEALSLGRTSTPGPAQSTIS 8762
Query: 230 APISTDATRLKFHPVFVPHSAPAVLT-HNNESRSNCVFEFHVHTPSSSSGEG 280
IST+ P+ SA +T S ++ F + T S +S G
Sbjct: 8763 PEISTETITRISTPLTTTGSAEMTITPKTGHSGASSQGTFTLDTSSRASWPG 8814
>gi|21361146 zinc finger protein 76 (expressed in testis) [Homo
sapiens]
Length = 570
Score = 30.0 bits (66), Expect = 4.3
Identities = 33/131 (25%), Positives = 51/131 (38%), Gaps = 21/131 (16%)
Query: 286 QRVYRNRQVAVDLNQEELPPQSVGLHGYLQPVTEEKHNYHAPELTVSVVEPIGQNWPIGS 345
Q +Y +Q+ EE PP YL V EE+ + A V+ + G+
Sbjct: 379 QALYEQQQLEAASAAEESPPPKRPRIAYLSEVKEERDDIPAQVAMVTEED--------GA 430
Query: 346 PE---YSSDSSQITSSDPSDFQSPPPTGGAAAPFGSDVSMPFIHLPQTVLQESPLFFCFP 402
P+ + D +Q S P D Q+ GS +SM H T+ SP
Sbjct: 431 PQVALITQDGAQQVSLSPEDLQA----------LGSAISMVTQHGSTTLTIPSPDADLAT 480
Query: 403 QGTTSQQVLTA 413
GT + +++A
Sbjct: 481 SGTHTVTMVSA 491
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 30.0 bits (66), Expect = 4.3
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 166 GIPYNSSVLSSPMKQIPEQKPVQGGPTSSSVFEFPSGQAFLVGHLQNLRLDSGLGPGSPL 225
GIP SV S+P + PVQ P S P G+ + ++ + G G G PL
Sbjct: 885 GIPILQSVPSAPPPKAQSVSPVQAPPPGGSAQLLP-GKVLVPLAAPSMSVRGG-GAGQPL 942
Query: 226 SSISAPIS 233
+S P S
Sbjct: 943 PLVSPPFS 950
>gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens]
Length = 1822
Score = 29.6 bits (65), Expect = 5.6
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 346 PEYSSDSSQITSSDPSDFQSPPPTGGAAAPFGSDVSMPFIHLPQTVLQESPLFFCFPQGT 405
P S+ S + SSD PP GGA GS P L + F FP T
Sbjct: 1398 PRLSASSGR--SSDAEAPHGPPDDGGAGGKGGSLPRSATPGPPGEHLVNGRMDFAFPGST 1455
Query: 406 TS-QQVLTASFSSGGSALHPQV 426
S ++ T S ++ G+ L P V
Sbjct: 1456 NSLHRMTTTSAAAYGTHLSPHV 1477
>gi|78000167 sorbin and SH3 domain containing 1 isoform 5 [Homo
sapiens]
Length = 905
Score = 29.6 bits (65), Expect = 5.6
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 33 FPTIHERPVSFSPPPTCPPKVAISQRRKSTSFL--EAQTHHFQPLLRTVGQSLL 84
F I + P SFSPPP P RR S L + PLL V SL+
Sbjct: 162 FAPISQTPPSFSPPPPLVPPAPEDLRRVSEPDLTGAVSSTDSSPLLNEVSSSLI 215
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 29.6 bits (65), Expect = 5.6
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 33 FPTIHERPVSFSPPPTCPPKVAISQRRKSTSFL--EAQTHHFQPLLRTVGQSLL 84
F I + P SFSPPP P RR S L + PLL V SL+
Sbjct: 231 FAPISQTPPSFSPPPPLVPPAPEDLRRVSEPDLTGAVSSTDSSPLLNEVSSSLI 284
>gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo
sapiens]
Length = 1292
Score = 29.6 bits (65), Expect = 5.6
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 33 FPTIHERPVSFSPPPTCPPKVAISQRRKSTSFL--EAQTHHFQPLLRTVGQSLL 84
F I + P SFSPPP P RR S L + PLL V SL+
Sbjct: 231 FAPISQTPPSFSPPPPLVPPAPEDLRRVSEPDLTGAVSSTDSSPLLNEVSSSLI 284
>gi|7661700 sorbin and SH3 domain containing 1 isoform 2 [Homo
sapiens]
Length = 816
Score = 29.6 bits (65), Expect = 5.6
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 33 FPTIHERPVSFSPPPTCPPKVAISQRRKSTSFL--EAQTHHFQPLLRTVGQSLL 84
F I + P SFSPPP P RR S L + PLL V SL+
Sbjct: 199 FAPISQTPPSFSPPPPLVPPAPEDLRRVSEPDLTGAVSSTDSSPLLNEVSSSLI 252
>gi|197276670 spermatogenesis and centriole associated 1 isoform 2
[Homo sapiens]
Length = 441
Score = 29.6 bits (65), Expect = 5.6
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 13 PQSMAHPCGGTPTYPESQIFFPTIHERPVSFSPPPTCPPKVAISQRRKSTS 63
P S H G P +P S++ H P P P CPP A S R S+S
Sbjct: 351 PSSTTHIAQGAP-HPPSRM-----HNSPTQNLPVPHCPPHNAHSPPRTSSS 395
>gi|197276668 spermatogenesis and centriole associated 1 isoform 1
[Homo sapiens]
Length = 591
Score = 29.6 bits (65), Expect = 5.6
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 13 PQSMAHPCGGTPTYPESQIFFPTIHERPVSFSPPPTCPPKVAISQRRKSTS 63
P S H G P +P S++ H P P P CPP A S R S+S
Sbjct: 351 PSSTTHIAQGAP-HPPSRM-----HNSPTQNLPVPHCPPHNAHSPPRTSSS 395
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,904,207
Number of Sequences: 37866
Number of extensions: 1151027
Number of successful extensions: 3778
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 3720
Number of HSP's gapped (non-prelim): 115
length of query: 434
length of database: 18,247,518
effective HSP length: 105
effective length of query: 329
effective length of database: 14,271,588
effective search space: 4695352452
effective search space used: 4695352452
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.