Guide to the Human Genome
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Name: LOC389043 Sequence: fasta or formatted (108aa) NCBI GI: 88957790
Description:

PREDICTED: hypothetical protein LOC389043

Not currently referenced in the text

Other entries for this name:
alt prot {128aa} PREDICTED: hypothetical protein LOC389043
alt prot {128aa} PREDICTED: hypothetical protein LOC389043
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine            3.7          4           1
 D aspartate           4.6          5           1
 E glutamate           8.3          9           1
 F phenylalanine       3.7          4           1
 G glycine             6.5          7           1
 H histidine           4.6          5           1
 I isoleucine          2.8          3           1
 K lysine              1.9          2           1
 L leucine            11.1         12           2
 M methionine          1.9          2           1
 N asparagine          0.9          1           1
 P proline            11.1         12           1
 Q glutamine           4.6          5           1
 R arginine           13.0         14           2
 S serine              9.3         10           1
 T threonine           4.6          5           1
 V valine              5.6          6           2
 W tryptophan          1.9          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC389043 
LOC389043             0.620   PREDICTED: hypothetical protein LOC389043 
LOC389043             0.611   PREDICTED: hypothetical protein LOC389043 
HSN2                  0.024   hereditary sensory neuropathy, type II 
LOC100131525          0.024   PREDICTED: hypothetical protein 
LOC100288473          0.024   PREDICTED: hypothetical protein XP_002343336 
LOC100293557          0.024   PREDICTED: hypothetical protein 
LOC400743             0.014   PREDICTED: hypothetical protein LOC400743 
LOC400743             0.014   PREDICTED: hypothetical protein LOC400743 
LOC400743             0.014   PREDICTED: hypothetical protein LOC400743 
PANK2                 0.014   pantothenate kinase 2 isoform 1 preproprotein 
HS6ST1                0.014   heparan sulfate 6-O-sulfotransferase 1 
ZNF48                 0.010   zinc finger protein 48 
FSIP1                 0.010   fibrous sheath interacting protein 1 
TTC34                 0.010   PREDICTED: tetratricopeptide repeat domain 34 [Homo...
TTC34                 0.010   PREDICTED: tetratricopeptide repeat domain 34 [Homo...
CTCFL                 0.010   CCCTC-binding factor-like protein 
ZNF154                0.010   zinc finger protein 154 
LOC650794             0.005   PREDICTED: similar to FRAS1 related extracellular m...
LOC650794             0.005   PREDICTED: similar to FRAS1 related extracellular m...
LOC650794             0.005   PREDICTED: similar to FRAS1 related extracellular m...
TET1                  0.005   CXXC finger 6 
ZNF565                0.005   zinc finger protein 565 
ZNF565                0.005   zinc finger protein 565 
LOC100288786          0.005   PREDICTED: hypothetical protein XP_002343819 
RICS                  0.005   Rho GTPase-activating protein isoform 1 
RICS                  0.005   Rho GTPase-activating protein isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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