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Search of human proteins with 47132600
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47132600 DNA fragmentation factor, 45kDa, alpha polypeptide
isoform 2 [Homo sapiens]
(268 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47132600 DNA fragmentation factor, 45kDa, alpha polypeptide i... 524 e-149
gi|4758148 DNA fragmentation factor, 45kDa, alpha polypeptide is... 508 e-144
gi|38158011 cell death-inducing DFFA-like effector a isoform 2 [... 58 8e-09
gi|4557465 cell death-inducing DFFA-like effector a isoform 1 [H... 58 8e-09
gi|23943904 cell death-inducing DFFA-like effector c [Homo sapiens] 50 2e-06
gi|93102358 cell death-inducing DFFA-like effector b [Homo sapiens] 46 4e-05
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 38 0.008
gi|7705415 hook homolog 1 [Homo sapiens] 36 0.031
gi|16262452 cingulin [Homo sapiens] 36 0.040
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 35 0.090
gi|194018511 keratin 77 [Homo sapiens] 34 0.15
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 34 0.15
gi|10864047 epidermal growth factor receptor pathway substrate 1... 34 0.15
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens] 34 0.15
gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap... 33 0.34
gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C... 33 0.34
gi|4758150 DNA fragmentation factor, 40 kD, beta polypeptide [Ho... 33 0.34
gi|157738615 coiled-coil alpha-helical rod protein 1 isoform 1 [... 33 0.34
gi|157738613 coiled-coil alpha-helical rod protein 1 isoform 2 [... 33 0.34
gi|157738611 coiled-coil alpha-helical rod protein 1 isoform 3 [... 33 0.34
gi|50083279 centrosome protein 4 [Homo sapiens] 33 0.34
gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapi... 33 0.34
gi|62414289 vimentin [Homo sapiens] 32 0.45
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi... 32 0.45
gi|55769583 progesterone-induced blocking factor 1 [Homo sapiens] 32 0.45
gi|28269672 serologically defined colon cancer antigen 8 [Homo s... 32 0.45
gi|229577185 epidermal growth factor receptor pathway substrate ... 32 0.58
gi|4503593 epidermal growth factor receptor pathway substrate 15... 32 0.58
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap... 32 0.58
gi|10440566 leucine zipper, putative tumor suppressor 1 [Homo sa... 32 0.58
>gi|47132600 DNA fragmentation factor, 45kDa, alpha polypeptide
isoform 2 [Homo sapiens]
Length = 268
Score = 524 bits (1349), Expect = e-149
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MEVTGDAGVPESGEIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVT 60
MEVTGDAGVPESGEIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVT
Sbjct: 1 MEVTGDAGVPESGEIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVT 60
Query: 61 LVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNNSDGGTAWISQESFDVDETDSGA 120
LVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNNSDGGTAWISQESFDVDETDSGA
Sbjct: 61 LVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNNSDGGTAWISQESFDVDETDSGA 120
Query: 121 GLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLD 180
GLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLD
Sbjct: 121 GLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLD 180
Query: 181 QREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASH 240
QREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASH
Sbjct: 181 QREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASH 240
Query: 241 ILTALREKQAPELSLSSQDLEVGGNQGH 268
ILTALREKQAPELSLSSQDLEVGGNQGH
Sbjct: 241 ILTALREKQAPELSLSSQDLEVGGNQGH 268
>gi|4758148 DNA fragmentation factor, 45kDa, alpha polypeptide
isoform 1 [Homo sapiens]
Length = 331
Score = 508 bits (1309), Expect = e-144
Identities = 261/262 (99%), Positives = 262/262 (100%)
Query: 1 MEVTGDAGVPESGEIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVT 60
MEVTGDAGVPESGEIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVT
Sbjct: 1 MEVTGDAGVPESGEIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVT 60
Query: 61 LVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNNSDGGTAWISQESFDVDETDSGA 120
LVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNNSDGGTAWISQESFDVDETDSGA
Sbjct: 61 LVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNNSDGGTAWISQESFDVDETDSGA 120
Query: 121 GLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLD 180
GLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLD
Sbjct: 121 GLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLD 180
Query: 181 QREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASH 240
QREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASH
Sbjct: 181 QREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASH 240
Query: 241 ILTALREKQAPELSLSSQDLEV 262
ILTALREKQAPELSLSSQDLE+
Sbjct: 241 ILTALREKQAPELSLSSQDLEL 262
>gi|38158011 cell death-inducing DFFA-like effector a isoform 2
[Homo sapiens]
Length = 253
Score = 58.2 bits (139), Expect = 8e-09
Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 26 NYSRE-QHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTK 84
N+ R + GV AS L++L SK D L I L VTLVL EDGT+VD +++F L NT
Sbjct: 75 NHDRSSRRGVMASSLQELISKTLDALVIATGL--VTLVLEEDGTVVDTEEFFQTLGDNTH 132
Query: 85 FVALASNEKW 94
F+ L +KW
Sbjct: 133 FMILEKGQKW 142
>gi|4557465 cell death-inducing DFFA-like effector a isoform 1 [Homo
sapiens]
Length = 219
Score = 58.2 bits (139), Expect = 8e-09
Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 26 NYSRE-QHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTK 84
N+ R + GV AS L++L SK D L I L VTLVL EDGT+VD +++F L NT
Sbjct: 41 NHDRSSRRGVMASSLQELISKTLDALVIATGL--VTLVLEEDGTVVDTEEFFQTLGDNTH 98
Query: 85 FVALASNEKW 94
F+ L +KW
Sbjct: 99 FMILEKGQKW 108
>gi|23943904 cell death-inducing DFFA-like effector c [Homo sapiens]
Length = 238
Score = 50.4 bits (119), Expect = 2e-06
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 19 KPCLLRRNYSREQHGVAASCLEDLRSKACDILAI-DKSLTPVTLVLAEDGTIVDDDDYFL 77
+PC + + G+ A LEDL K D L + DK P LVL EDGT V+ ++YF
Sbjct: 43 RPCRVSTADRSVRKGIMAYSLEDLLLKVRDTLMLADK---PFFLVLEEDGTTVETEEYFQ 99
Query: 78 CLPSNTKFVALASNEKWAYNNSDG 101
L +T F+ L +KW + G
Sbjct: 100 ALAGDTVFMVLQKGQKWQPPSEQG 123
>gi|93102358 cell death-inducing DFFA-like effector b [Homo sapiens]
Length = 219
Score = 45.8 bits (107), Expect = 4e-05
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 33 GVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTKFVALASNE 92
G+ A+ ++L +KA + L ++ LT LVL EDGT VD +D+F L +T + L S +
Sbjct: 50 GLTAATRQELLAKALETLLLNGVLT---LVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQ 106
Query: 93 KWAYNNS 99
W+ S
Sbjct: 107 SWSPTRS 113
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 38.1 bits (87), Expect = 0.008
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 155 SDLAQELRQSCATVQRLQHTLQQVLDQREEVRQSKQLLQLYLQALEKEGSLLSKQEESKA 214
S+L +LRQ L + QQ Q EE + ++ +++L E L K+ ++
Sbjct: 1272 SELEAQLRQLTEEQNTLNISFQQATHQLEEKENQIKSMKADIESLVTEKEALQKEGGNQQ 1331
Query: 215 AFGEEVDAVDTGISRETSSDVALASHILTALREKQAPELSLSSQ--DLEV 262
E ++ T + +E S ++ + + L+EK+ SLS Q DL V
Sbjct: 1332 QAASEKESCITQLKKELSENINAVTLMKEELKEKKVEISSLSKQLTDLNV 1381
Score = 35.8 bits (81), Expect = 0.040
Identities = 28/136 (20%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 125 KNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLDQREE 184
KN+ QL++D +I ++ + ++ ++AQ L+ ++Q+ Q EE
Sbjct: 352 KNLIEQLEQDKGMVIAETKRQMHETLEMKEEEIAQ-----------LRSRIKQMTTQGEE 400
Query: 185 VRQSKQLLQ-LYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASHILT 243
+R+ K+ + + LEK S K EE++ E+D I + + + L+
Sbjct: 401 LREQKEKSERAAFEELEKALSTAQKTEEARRKLKAEMDEQIKTIEKTSEEERISLQQELS 460
Query: 244 ALREKQAPELSLSSQD 259
++++ + SS++
Sbjct: 461 RVKQEVVDVMKKSSEE 476
Score = 31.2 bits (69), Expect = 0.99
Identities = 29/146 (19%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 106 ISQESFDVDETDSGAGLKWKNVARQLKEDLSSIILLSEEDLQMLV--------------- 150
I QE D++ LK + +QL + ++ + E++L+M +
Sbjct: 1979 IKQEQEDLE-------LKHNSTLKQLMREFNTQLAQKEQELEMTIKETINKAQEVEAELL 2031
Query: 151 ---DAPCSDLAQELRQSCATVQRLQHTLQQVLDQREEVRQSK-QLLQLYLQALEKEGSLL 206
+ L +++ + ++R +++LD REE +K + LQ L+ L+K+
Sbjct: 2032 ESHQEETNQLLKKIAEKDDDLKRTAKRYEEILDAREEEMTAKVRDLQTQLEELQKKYQQK 2091
Query: 207 SKQEESKAAFGEEVDAVDTGISRETS 232
+QEE+ + + T ++++T+
Sbjct: 2092 LEQEENPGNDNVTIMELQTQLAQKTT 2117
>gi|7705415 hook homolog 1 [Homo sapiens]
Length = 728
Score = 36.2 bits (82), Expect = 0.031
Identities = 26/97 (26%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 131 LKEDLSSIILLSEEDLQM--LVDAPCSDLAQELRQSCATVQRLQHTLQQVLDQREEVRQS 188
L+E + +++ + ++L ++ +P +D EL Q ++R LQ+ L ++EE+RQ
Sbjct: 144 LEESVQHVVMTAIQELMSKEILSSPPNDAVGELEQQ---LKRALEELQEALAEKEELRQR 200
Query: 189 KQLLQLYLQALEKE-GSLLSKQEESKAAFGEEVDAVD 224
+ L + + L+ E SL+S+ E E++D +D
Sbjct: 201 CEELDMQVTTLQDEKNSLVSENE----MMNEKLDQLD 233
>gi|16262452 cingulin [Homo sapiens]
Length = 1203
Score = 35.8 bits (81), Expect = 0.040
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 168 VQRLQHTLQQVLDQREEVRQSKQLLQLYLQALEKEGSLLSKQEESKA----AFGEEVDAV 223
+QRL+ LQ +R+ R K+LL LQ LE+E + ++ +A E+V +
Sbjct: 915 IQRLRQALQASQAERDTARLDKELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEKVSRL 974
Query: 224 DTGISRETSSDVALASHI------LTALREKQAPELSLSSQDLE 261
+T + E ++ L + + LR + E S + QDLE
Sbjct: 975 ETELDEEKNTVELLTDRVNRGRDQVDQLRTELMQERS-ARQDLE 1017
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 34.7 bits (78), Expect = 0.090
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 103 TAWISQESFDVDETDSGAGLKWKNVARQLKEDLSSIILL--SEEDLQMLVDAPCSDLAQE 160
T +S E +D T +GA L+ RQ+++ + +++L S Q+ VDA L E
Sbjct: 1896 TVRLSAEKGRLDRTLTGAELELAEAQRQIQQLEAQVVVLEQSHSPAQLEVDAQQQQL--E 1953
Query: 161 LRQSCATVQRLQHTLQQVLDQREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAF 216
L+Q ++ Q ++ L+ RE + +++ L Q +G L + S A F
Sbjct: 1954 LQQEVERLRSAQAQTERTLEARERAHR-QRVRGLEEQVSTLKGQLQQELRRSSAPF 2008
Score = 33.5 bits (75), Expect = 0.20
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 129 RQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQR----LQHTLQQVLDQREE 184
R L+E L + ++ +Q DA Q LR + + R L H+LQ Q EE
Sbjct: 564 RALEEQLQRLRDKTDGAMQAHEDAQRE--VQRLRSANELLSREKSNLAHSLQVAQQQAEE 621
Query: 185 VRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEV 220
+RQ ++ LQ + L ++ L +++E G V
Sbjct: 622 LRQEREKLQAAQEELRRQRDRLEEEQEDAVQDGARV 657
>gi|194018511 keratin 77 [Homo sapiens]
Length = 578
Score = 33.9 bits (76), Expect = 0.15
Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 22/179 (12%)
Query: 107 SQESFDVDETDSGAGLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQ---ELRQ 163
+ S D+D +++ +A++ K++ ++ ++LQ+ DL E+ +
Sbjct: 325 NNRSLDLDSIIDAVRTQYELIAQRSKDEAEALYQTKYQELQITAGRHGDDLKNSKMEIAE 384
Query: 164 SCATVQRLQHTLQQVLDQREEVRQ-----------SKQLLQLYLQALEKEGSLLSKQEES 212
TVQRLQ + V ++++ Q +Q LQ Q L+ L + +E
Sbjct: 385 LNRTVQRLQAEISNV---KKQIEQMQSLISDAEERGEQALQDAWQKLQDLEEALQQSKEE 441
Query: 213 KAAFGEEVDAVDTGISRETSSDVALASHILTALREKQAPEL----SLSSQDLEVGGNQG 267
A + A+ G+ ++A +L + + EL S+S Q+ +V N G
Sbjct: 442 LARLLRDYQAM-LGVKLSLDVEIATYRQLLEGEESRMSGELQSHVSISVQNSQVSVNGG 499
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 33.9 bits (76), Expect = 0.15
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 107 SQESFDVDETDSGAGLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQE--LRQS 164
S++ D ++ + LK + QLKE +++ +LQ +D ++ L+QS
Sbjct: 445 SEKLMDKEQQVADLQLKLSRLEEQLKEKVTN-----STELQHQLDKTKQQHQEQQALQQS 499
Query: 165 C-ATVQRLQHTLQQVLDQREEVRQSKQLLQLYLQALEKEGSLLSKQEE---SKAAFGEEV 220
A ++ Q+ L+QVL Q + Q Q L+ LQ ++ SLL K+ E +K GE
Sbjct: 500 TTAKLREAQNDLEQVLRQIGDKDQKIQNLEALLQKSKENISLLEKEREDLYAKIQAGEGE 559
Query: 221 DAV 223
AV
Sbjct: 560 TAV 562
Score = 28.5 bits (62), Expect = 6.4
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 129 RQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLDQREEVRQS 188
++L+ D + E+ LQ L Q+ RQ ++ L + L+ +E+ S
Sbjct: 733 KKLEADSLEVKASKEQALQDL---------QQQRQLNTDLELRATELSKQLEMEKEIVSS 783
Query: 189 KQL-LQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETS-SDVALASHILTALR 246
+L LQ +ALE L+KQEE K ++ + +S+ET L + I T +
Sbjct: 784 TRLDLQKKSEALESIKQKLTKQEEEKQILKQDFET----LSQETKIQHEELNNRIQTTVT 839
Query: 247 EKQ 249
E Q
Sbjct: 840 ELQ 842
>gi|10864047 epidermal growth factor receptor pathway substrate
15-like 1 [Homo sapiens]
Length = 864
Score = 33.9 bits (76), Expect = 0.15
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 160 ELRQSCATVQRLQHTLQQVLDQREE-VRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGE 218
++ Q A +QR +++L+Q + ++EE +RQ +Q L++E S L + E K +
Sbjct: 388 DISQEIAQLQREKYSLEQDIREKEEAIRQKTSEVQELQNDLDRETSSLQELEAQKQDAQD 447
Query: 219 EVDAVDTGIS--RETSSDVAL----ASHILTALREK-QAPELSLSSQD 259
+D +D + R+ SDV + ++++L+ + Q+ E L SQ+
Sbjct: 448 RLDEMDQQKAKLRDMLSDVRQKCQDETQMISSLKTQIQSQESDLKSQE 495
>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
Length = 1498
Score = 33.9 bits (76), Expect = 0.15
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 141 LSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLDQREEVRQSKQLLQLYLQALE 200
L E++LQ ++ +QEL +S V L+ LQ+ R+++++ ++ + LE
Sbjct: 1060 LLEKELQEVIALT----SQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELE 1115
Query: 201 KEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASHILTALREKQ 249
E L+ +S AA E ++T +++ + V L + L+ K+
Sbjct: 1116 HEKGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKE 1164
>gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo
sapiens]
Length = 693
Score = 32.7 bits (73), Expect = 0.34
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 10/134 (7%)
Query: 133 EDLSSIILLSEEDLQMLVDAP---CSDLAQELRQS---CATVQRLQHTLQQVLDQREEVR 186
E+ ++ LLS+E Q L + AQ +R+ C +RL+ + + +Q E +R
Sbjct: 323 ENNQALSLLSKEQKQRLQEQEEMLREQEAQRVREQERLCEQNERLREQQKTLQEQGERLR 382
Query: 187 QSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASHILTALR 246
+ +Q L+ + L KE L KQE+ E + + + ++ +H L
Sbjct: 383 KQEQRLRKQEERLRKEEERLQKQEKRLWDQEERLWKKEERLQKQEERLALSQNHKL---- 438
Query: 247 EKQAPELSLSSQDL 260
+KQ E S +DL
Sbjct: 439 DKQLAEPQCSFEDL 452
>gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C
isoform 1 [Homo sapiens]
Length = 693
Score = 32.7 bits (73), Expect = 0.34
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 10/134 (7%)
Query: 133 EDLSSIILLSEEDLQMLVDAP---CSDLAQELRQS---CATVQRLQHTLQQVLDQREEVR 186
E+ ++ LLS+E Q L + AQ +R+ C +RL+ + + +Q E +R
Sbjct: 323 ENNQALSLLSKEQKQRLQEQEEMLREQEAQRVREQERLCEQNERLREQQKTLQEQGERLR 382
Query: 187 QSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASHILTALR 246
+ +Q L+ + L KE L KQE+ E + + + ++ +H L
Sbjct: 383 KQEQRLRKQEERLRKEEERLQKQEKRLWDQEERLWKKEERLQKQEERLALSQNHKL---- 438
Query: 247 EKQAPELSLSSQDL 260
+KQ E S +DL
Sbjct: 439 DKQLAEPQCSFEDL 452
>gi|4758150 DNA fragmentation factor, 40 kD, beta polypeptide [Homo
sapiens]
Length = 338
Score = 32.7 bits (73), Expect = 0.34
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 19 KPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLC 78
K LR S + GVA +++ K C L L L EDGT + +D YF
Sbjct: 6 KSVKLRALRSPRKFGVAGRSCQEVLRKGC--LRFQLPERGSRLCLYEDGTELTED-YFPS 62
Query: 79 LPSNTKFVALASNEKWAYNNSD 100
+P N + V L + W SD
Sbjct: 63 VPDNAELVLLTLGQAWQGYVSD 84
>gi|157738615 coiled-coil alpha-helical rod protein 1 isoform 1
[Homo sapiens]
Length = 871
Score = 32.7 bits (73), Expect = 0.34
Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 14/154 (9%)
Query: 109 ESFDVDETDSGAGLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATV 168
E+ ++ E A L K +++ +EDL + + L E + + + S++ + +
Sbjct: 303 EAKELAEAQREAELLRKQLSKT-QEDLEAQVTLVENLRKYVGEQVPSEVHSQTWE--LER 359
Query: 169 QRLQHTLQQVLDQREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGIS 228
Q+L T+Q + + R+ + + +LLQ+ +Q+L +L+ QEE + D+++ +
Sbjct: 360 QKLLETMQHLQEDRDSLHATAELLQVRVQSLT---HILALQEEELTRKVQPSDSLEPEFT 416
Query: 229 RETSSDVALASHILTALREKQ-APELSLSSQDLE 261
R+ S +L REK A + L +Q+LE
Sbjct: 417 RKCQS-------LLNRWREKVFALMVQLKAQELE 443
>gi|157738613 coiled-coil alpha-helical rod protein 1 isoform 2
[Homo sapiens]
Length = 835
Score = 32.7 bits (73), Expect = 0.34
Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 14/154 (9%)
Query: 109 ESFDVDETDSGAGLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATV 168
E+ ++ E A L K +++ +EDL + + L E + + + S++ + +
Sbjct: 267 EAKELAEAQREAELLRKQLSKT-QEDLEAQVTLVENLRKYVGEQVPSEVHSQTWE--LER 323
Query: 169 QRLQHTLQQVLDQREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGIS 228
Q+L T+Q + + R+ + + +LLQ+ +Q+L +L+ QEE + D+++ +
Sbjct: 324 QKLLETMQHLQEDRDSLHATAELLQVRVQSLT---HILALQEEELTRKVQPSDSLEPEFT 380
Query: 229 RETSSDVALASHILTALREKQ-APELSLSSQDLE 261
R+ S +L REK A + L +Q+LE
Sbjct: 381 RKCQS-------LLNRWREKVFALMVQLKAQELE 407
>gi|157738611 coiled-coil alpha-helical rod protein 1 isoform 3
[Homo sapiens]
Length = 782
Score = 32.7 bits (73), Expect = 0.34
Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 14/154 (9%)
Query: 109 ESFDVDETDSGAGLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATV 168
E+ ++ E A L K +++ +EDL + + L E + + + S++ + +
Sbjct: 214 EAKELAEAQREAELLRKQLSKT-QEDLEAQVTLVENLRKYVGEQVPSEVHSQTWE--LER 270
Query: 169 QRLQHTLQQVLDQREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGIS 228
Q+L T+Q + + R+ + + +LLQ+ +Q+L +L+ QEE + D+++ +
Sbjct: 271 QKLLETMQHLQEDRDSLHATAELLQVRVQSLT---HILALQEEELTRKVQPSDSLEPEFT 327
Query: 229 RETSSDVALASHILTALREKQ-APELSLSSQDLE 261
R+ S +L REK A + L +Q+LE
Sbjct: 328 RKCQS-------LLNRWREKVFALMVQLKAQELE 354
>gi|50083279 centrosome protein 4 [Homo sapiens]
Length = 1140
Score = 32.7 bits (73), Expect = 0.34
Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 108 QESFDVDETDSGAGLKWKNVARQLKEDLSSIILLSE------EDLQMLVDAPCSDLAQEL 161
+E + ET + + N +L ++L+ I L++ E++ D + +E+
Sbjct: 292 RELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEEVLETADKELGEAKKEI 351
Query: 162 RQSCATVQRLQHTLQQV-----LDQREEVRQSKQLL-----QLYLQALEKEGSLLSKQEE 211
++ + +Q L+ T+ ++ L Q+E+ R S +LL + + LE+E LSK+ E
Sbjct: 352 KRKLSEMQDLEETMAKLQLELNLCQKEKERLSDELLVKSDLETVVHQLEQEKQRLSKKVE 411
Query: 212 SKA 214
S A
Sbjct: 412 SFA 414
Score = 29.6 bits (65), Expect = 2.9
Identities = 17/82 (20%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 175 LQQVLDQREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSD 234
+ Q+ +R+E+++ + + Y++ ++ LL+ + + + E + + +E++
Sbjct: 498 IHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQ- 556
Query: 235 VALASHILTALREKQAPELSLS 256
A H + +L EK+ EL+LS
Sbjct: 557 -TTAPHNIVSLMEKE-KELALS 576
>gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo
sapiens]
Length = 693
Score = 32.7 bits (73), Expect = 0.34
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 10/134 (7%)
Query: 133 EDLSSIILLSEEDLQMLVDAP---CSDLAQELRQS---CATVQRLQHTLQQVLDQREEVR 186
E+ ++ LLS+E Q L + AQ +R+ C +RL+ + + +Q E +R
Sbjct: 323 ENNQALSLLSKEQKQRLQEQEEMLREQEAQRVREQERLCEQNERLREQQKTLQEQGERLR 382
Query: 187 QSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASHILTALR 246
+ +Q L+ + L KE L KQE+ E + + + ++ +H L
Sbjct: 383 KQEQRLRKQEERLRKEEERLQKQEKRLWDQEERLWKKEERLQKQEERLALSQNHKL---- 438
Query: 247 EKQAPELSLSSQDL 260
+KQ E S +DL
Sbjct: 439 DKQLAEPQCSFEDL 452
>gi|62414289 vimentin [Homo sapiens]
Length = 466
Score = 32.3 bits (72), Expect = 0.45
Identities = 63/258 (24%), Positives = 108/258 (41%), Gaps = 30/258 (11%)
Query: 18 LKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFL 77
L+P R Y+ GV A+ RS A + +S P +L D D+ L
Sbjct: 44 LRPSTSRSLYASSPGGVYAT-----RSSAVRL----RSSVPGVRLLQ------DSVDFSL 88
Query: 78 CLPSNTKFVALASNEKWAYNN-SDGGTAWISQESFDVDETDSGAGLKWKNVARQLKEDLS 136
NT+F +NEK +D +I + F +++ + + + + Q K L
Sbjct: 89 ADAINTEFKNTRTNEKVELQELNDRFANYIDKVRF-LEQQNKILLAELEQLKGQGKSRLG 147
Query: 137 SIILLSEEDLQMLVDAPCSDLAQ---ELRQSCATVQRLQHTLQQVLDQREEVRQSKQLLQ 193
+ +L+ VD +D A+ E + RL+ LQ+ + QREE + Q +
Sbjct: 148 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFR 207
Query: 194 -----LYLQALEKEGSLLSKQEE---SKAAFGEEVDAVDTGISRE-TSSDVALASHILT- 243
L L+ E + S QEE K EE+ + I + DV ++ LT
Sbjct: 208 QDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQEQHVQIDVDVSKPDLTA 267
Query: 244 ALREKQAPELSLSSQDLE 261
ALR+ + S+++++L+
Sbjct: 268 ALRDVRQQYESVAAKNLQ 285
>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
sapiens]
Length = 693
Score = 32.3 bits (72), Expect = 0.45
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 10/134 (7%)
Query: 133 EDLSSIILLSEEDLQMLVDAPCSDLAQELRQS------CATVQRLQHTLQQVLDQREEVR 186
E+ ++ LLS+E Q L + QE+++ C +RL+ + + +Q E +R
Sbjct: 323 ENNQALSLLSKEQKQRLQEQEEMLREQEVQRVREQERLCEQNERLREQQKTLQEQGERLR 382
Query: 187 QSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASHILTALR 246
+ +Q L+ + L KE L KQE+ E + + + ++ +H L
Sbjct: 383 KQEQRLRKQEERLRKEEERLQKQEKRLWDQEERLWKKEERLQKQEERLALSQNHKL---- 438
Query: 247 EKQAPELSLSSQDL 260
+KQ E S +DL
Sbjct: 439 DKQLAEPQCSFEDL 452
>gi|55769583 progesterone-induced blocking factor 1 [Homo sapiens]
Length = 757
Score = 32.3 bits (72), Expect = 0.45
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
Query: 124 WKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLDQRE 183
++ + +++ S I L+E Q+ D S+L +E T ++ L+Q+L+ RE
Sbjct: 626 YRYLIESVRQRDSKIDSLTESIAQLEKDV--SNLNKEKSALLQTKNQMALDLEQLLNHRE 683
Query: 184 EVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASHILT 243
E+ KQ+L + + + E SLL + E K E + + +E ++ T
Sbjct: 684 ELAAMKQIL-VKMHSKHSENSLLLTKTEPKHV-TENQKSKTLNVPKEHEDNIFTPKP--T 739
Query: 244 ALREKQAPELS 254
+K+APE S
Sbjct: 740 LFTKKEAPEWS 750
>gi|28269672 serologically defined colon cancer antigen 8 [Homo
sapiens]
Length = 713
Score = 32.3 bits (72), Expect = 0.45
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 159 QELRQSCATVQRLQHTLQQVLDQREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGE 218
+EL + C R+ T++Q L Q + + S+ Q +Q L K+ LL +++ + E
Sbjct: 643 EELEEQCVQHGRVHETMKQRLRQLD--KHSQATAQQLVQLLSKQNQLLLERQ----SLSE 696
Query: 219 EVDAVDTGISRETSSD 234
EVD + T + SD
Sbjct: 697 EVDRLRTQLPSMPQSD 712
>gi|229577185 epidermal growth factor receptor pathway substrate 15
isoform B [Homo sapiens]
Length = 582
Score = 32.0 bits (71), Expect = 0.58
Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 20/152 (13%)
Query: 126 NVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLDQREEV 185
NV + LKE +ED + DL E+++ +Q+LQ QQV + +E+
Sbjct: 37 NVEQDLKE---------KEDTIKQRTSEVQDLQDEVQRENTNLQKLQAQKQQVQELLDEL 87
Query: 186 RQSKQLLQLYLQALEK----EGSLLS-------KQEESKAAFGEEVDAVDTGISRETSSD 234
+ K L+ L+ + K E L+S QE + + EE+ +SR
Sbjct: 88 DEQKAQLEEQLKEVRKKCAEEAQLISSLKAELTSQESQISTYEEELAKAREELSRLQQET 147
Query: 235 VALASHILTALREKQAPELSLSSQDLEVGGNQ 266
L + + + + + L E+ Q
Sbjct: 148 AELEESVESGKAQLEPLQQHLQDSQQEISSMQ 179
>gi|4503593 epidermal growth factor receptor pathway substrate 15
isoform A [Homo sapiens]
Length = 896
Score = 32.0 bits (71), Expect = 0.58
Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 20/152 (13%)
Query: 126 NVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLDQREEV 185
NV + LKE +ED + DL E+++ +Q+LQ QQV + +E+
Sbjct: 351 NVEQDLKE---------KEDTIKQRTSEVQDLQDEVQRENTNLQKLQAQKQQVQELLDEL 401
Query: 186 RQSKQLLQLYLQALEK----EGSLLS-------KQEESKAAFGEEVDAVDTGISRETSSD 234
+ K L+ L+ + K E L+S QE + + EE+ +SR
Sbjct: 402 DEQKAQLEEQLKEVRKKCAEEAQLISSLKAELTSQESQISTYEEELAKAREELSRLQQET 461
Query: 235 VALASHILTALREKQAPELSLSSQDLEVGGNQ 266
L + + + + + L E+ Q
Sbjct: 462 AELEESVESGKAQLEPLQQHLQDSQQEISSMQ 493
>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo
sapiens]
Length = 1116
Score = 32.0 bits (71), Expect = 0.58
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 125 KNVARQLKEDLSSIILLSEEDLQML--VDAPCSDLAQELRQSCATVQRLQHTLQQVLDQR 182
KN QLKE+LSS EE + + A + QEL + + LQ L+ + +Q
Sbjct: 437 KNKVEQLKEELSSKEAQWEELKKKAAGLQAEIGQVKQELSRKDTELLALQTKLETLTNQF 496
Query: 183 EEVRQSKQLLQLYLQALEKEGSLLSKQEES 212
+ +Q ++L+ L A E+ ++L + ++
Sbjct: 497 SDSKQHIEVLKESLTAKEQRAAILQTEVDA 526
>gi|10440566 leucine zipper, putative tumor suppressor 1 [Homo
sapiens]
Length = 596
Score = 32.0 bits (71), Expect = 0.58
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 160 ELRQSCATVQRLQHTLQ-QVLDQREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGE 218
+L+Q+ QR Q L QVL ++E RQ +Q L+ ++ + + L E K +FG
Sbjct: 316 KLKQASQKSQRAQQVLHLQVLQLQQEKRQLRQELESLMKEQDLLETKLRSYEREKTSFGP 375
Query: 219 EVDAVDTGISRETSSDVALASHIL----TALREKQAPELSLSSQ 258
++ + ++ S +++L L T + K + L L +Q
Sbjct: 376 ALEETQWEVCQK-SGEISLLKQQLKESQTEVNAKASEILGLKAQ 418
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,615,079
Number of Sequences: 37866
Number of extensions: 400852
Number of successful extensions: 1820
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 1647
Number of HSP's gapped (non-prelim): 292
length of query: 268
length of database: 18,247,518
effective HSP length: 100
effective length of query: 168
effective length of database: 14,460,918
effective search space: 2429434224
effective search space used: 2429434224
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.