Guide to the Human Genome
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Name: CCHCR1 Sequence: fasta or formatted (782aa) NCBI GI: 157738611
Description:

coiled-coil alpha-helical rod protein 1 isoform 3

Referenced in:

Coiled-Coil Proteins

Other entries for this name:
alt prot [835aa] coiled-coil alpha-helical rod protein 1 isoform 2
alt prot [871aa] coiled-coil alpha-helical rod protein 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         74           3
 C cysteine            0.6          5           1
 D aspartate           2.7         21           2
 E glutamate          13.0        102           3
 F phenylalanine       0.5          4           1
 G glycine             3.6         28           1
 H histidine           1.4         11           1
 I isoleucine          1.5         12           1
 K lysine              4.3         34           3
 L leucine            14.6        114           2
 M methionine          1.4         11           1
 N asparagine          1.4         11           2
 P proline             3.5         27           3
 Q glutamine          11.8         92           3
 R arginine            9.8         77           3
 S serine              9.0         70           3
 T threonine           4.0         31           2
 V valine              6.0         47           2
 W tryptophan          0.9          7           1
 Y tyrosine            0.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil alpha-helical rod protein 1 isoform 3 [... 
CCHCR1                1.000   coiled-coil alpha-helical rod protein 1 isoform 1 [...
CCHCR1                0.943   coiled-coil alpha-helical rod protein 1 isoform 2 [...
PLEC1                 0.065   plectin 1 isoform 11 
PLEC1                 0.065   plectin 1 isoform 10 
PLEC1                 0.065   plectin 1 isoform 8 
PLEC1                 0.065   plectin 1 isoform 7 
PLEC1                 0.065   plectin 1 isoform 6 
PLEC1                 0.065   plectin 1 isoform 3 
PLEC1                 0.065   plectin 1 isoform 2 
PLEC1                 0.065   plectin 1 isoform 1 
CROCC                 0.064   ciliary rootlet coiled-coil 
MYH7B                 0.064   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
TCHH                  0.062   trichohyalin 
CGN                   0.061   cingulin 
MYH4                  0.058   myosin, heavy polypeptide 4, skeletal muscle 
MYH9                  0.058   myosin, heavy polypeptide 9, non-muscle 
MYH10                 0.057   myosin, heavy polypeptide 10, non-muscle 
PPL                   0.057   periplakin 
CEP250                0.056   centrosomal protein 2 
MYH14                 0.056   myosin, heavy chain 14 isoform 1 
MYH14                 0.056   myosin, heavy chain 14 isoform 2 
MYH14                 0.056   myosin, heavy chain 14 isoform 3 
NUMA1                 0.055   nuclear mitotic apparatus protein 1 
MYH7                  0.055   myosin, heavy chain 7, cardiac muscle, beta 
CCDC18                0.054   sarcoma antigen NY-SAR-41 
MYH11                 0.054   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.054   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.054   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.054   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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