Guide to the Human Genome
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Name: CCHCR1 Sequence: fasta or formatted (871aa) NCBI GI: 157738615
Description:

coiled-coil alpha-helical rod protein 1 isoform 1

Referenced in:

Coiled-Coil Proteins

Other entries for this name:
alt prot [782aa] coiled-coil alpha-helical rod protein 1 isoform 3
alt prot [835aa] coiled-coil alpha-helical rod protein 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         80           3
 C cysteine            0.9          8           1
 D aspartate           2.9         25           2
 E glutamate          12.2        106           3
 F phenylalanine       0.6          5           1
 G glycine             3.9         34           1
 H histidine           1.6         14           1
 I isoleucine          1.5         13           1
 K lysine              4.0         35           3
 L leucine            14.1        123           2
 M methionine          1.5         13           1
 N asparagine          1.8         16           2
 P proline             4.2         37           3
 Q glutamine          10.7         93           3
 R arginine           10.3         90           3
 S serine              9.0         78           3
 T threonine           3.8         33           2
 V valine              5.7         50           2
 W tryptophan          1.6         14           1
 Y tyrosine            0.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil alpha-helical rod protein 1 isoform 1 [... 
CCHCR1                0.944   coiled-coil alpha-helical rod protein 1 isoform 2 [...
CCHCR1                0.879   coiled-coil alpha-helical rod protein 1 isoform 3 [...
PLEC1                 0.057   plectin 1 isoform 11 
PLEC1                 0.057   plectin 1 isoform 10 
PLEC1                 0.057   plectin 1 isoform 8 
PLEC1                 0.057   plectin 1 isoform 7 
PLEC1                 0.057   plectin 1 isoform 6 
PLEC1                 0.057   plectin 1 isoform 3 
PLEC1                 0.057   plectin 1 isoform 2 
PLEC1                 0.057   plectin 1 isoform 1 
CROCC                 0.056   ciliary rootlet coiled-coil 
MYH7B                 0.056   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
TCHH                  0.055   trichohyalin 
CGN                   0.054   cingulin 
MYH4                  0.051   myosin, heavy polypeptide 4, skeletal muscle 
MYH9                  0.051   myosin, heavy polypeptide 9, non-muscle 
MYH10                 0.050   myosin, heavy polypeptide 10, non-muscle 
PPL                   0.050   periplakin 
CEP250                0.049   centrosomal protein 2 
MYH14                 0.049   myosin, heavy chain 14 isoform 1 
MYH14                 0.049   myosin, heavy chain 14 isoform 2 
MYH14                 0.049   myosin, heavy chain 14 isoform 3 
NUMA1                 0.049   nuclear mitotic apparatus protein 1 
MYH7                  0.048   myosin, heavy chain 7, cardiac muscle, beta 
CCDC18                0.047   sarcoma antigen NY-SAR-41 
MYH11                 0.047   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.047   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.047   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.047   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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