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Search of human proteins with 47132577
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47132577 AMP-activated protein kinase, non-catalytic gamma-3
subunit [Homo sapiens]
(489 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47132577 AMP-activated protein kinase, non-catalytic gamma-3 ... 982 0.0
gi|100913192 AMP-activated protein kinase gamma2 subunit isoform... 420 e-117
gi|100913189 AMP-activated protein kinase gamma2 subunit isoform... 420 e-117
gi|33186925 AMP-activated protein kinase gamma2 subunit isoform ... 420 e-117
gi|4506061 AMP-activated protein kinase, noncatalytic gamma-1 su... 396 e-110
gi|47132575 AMP-activated protein kinase, noncatalytic gamma-1 s... 305 6e-83
gi|38176300 nestin [Homo sapiens] 36 0.069
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 35 0.15
gi|178557734 microtubule-associated protein tau isoform 6 [Homo ... 34 0.34
gi|82534351 microtubule-associated protein tau isoform 1 [Homo s... 34 0.34
gi|169167405 PREDICTED: hypothetical protein [Homo sapiens] 34 0.34
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 34 0.34
gi|4557489 cone-rod homeobox protein [Homo sapiens] 34 0.34
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu... 33 0.45
gi|145309306 scavenger receptor class F, member 1 isoform 5 prec... 33 0.45
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens] 33 0.59
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens] 33 0.59
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ... 33 0.59
gi|21536409 bridging integrator 1 isoform 5 [Homo sapiens] 33 0.59
gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens] 33 0.59
gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens] 33 0.59
gi|178557736 microtubule-associated protein tau isoform 5 [Homo ... 33 0.77
gi|29171711 melanoma antigen family B, 1 [Homo sapiens] 33 0.77
gi|29171709 melanoma antigen family B, 1 [Homo sapiens] 33 0.77
gi|29171707 melanoma antigen family B, 1 [Homo sapiens] 33 0.77
gi|237512982 voltage-gated sodium channel type V alpha isoform f... 32 1.0
gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens] 32 1.0
gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens] 32 1.0
gi|21536402 bridging integrator 1 isoform 2 [Homo sapiens] 32 1.3
gi|21536400 bridging integrator 1 isoform 1 [Homo sapiens] 32 1.3
>gi|47132577 AMP-activated protein kinase, non-catalytic gamma-3
subunit [Homo sapiens]
Length = 489
Score = 982 bits (2538), Expect = 0.0
Identities = 489/489 (100%), Positives = 489/489 (100%)
Query: 1 MEPGLEHALRRTPSWSSLGGSEHQEMSFLEQENSSSWPSPAVTSSSERIRGKRRAKALRW 60
MEPGLEHALRRTPSWSSLGGSEHQEMSFLEQENSSSWPSPAVTSSSERIRGKRRAKALRW
Sbjct: 1 MEPGLEHALRRTPSWSSLGGSEHQEMSFLEQENSSSWPSPAVTSSSERIRGKRRAKALRW 60
Query: 61 TRQKSVEEGEPPGQGEGPRSRPAAESTGLEATFPKTTPLAQADPAGVGTPPTGWDCLPSD 120
TRQKSVEEGEPPGQGEGPRSRPAAESTGLEATFPKTTPLAQADPAGVGTPPTGWDCLPSD
Sbjct: 61 TRQKSVEEGEPPGQGEGPRSRPAAESTGLEATFPKTTPLAQADPAGVGTPPTGWDCLPSD 120
Query: 121 CTASAAGSSTDDVELATEFPATEAWECELEGLLEERPALCLSPQAPFPKLGWDDELRKPG 180
CTASAAGSSTDDVELATEFPATEAWECELEGLLEERPALCLSPQAPFPKLGWDDELRKPG
Sbjct: 121 CTASAAGSSTDDVELATEFPATEAWECELEGLLEERPALCLSPQAPFPKLGWDDELRKPG 180
Query: 181 AQIYMRFMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAPLWDSKKQSFVGM 240
AQIYMRFMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAPLWDSKKQSFVGM
Sbjct: 181 AQIYMRFMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAPLWDSKKQSFVGM 240
Query: 241 LTITDFILVLHRYYRSPLVQIYEIEQHKIETWREIYLQGCFKPLVSISPNDSLFEAVYTL 300
LTITDFILVLHRYYRSPLVQIYEIEQHKIETWREIYLQGCFKPLVSISPNDSLFEAVYTL
Sbjct: 241 LTITDFILVLHRYYRSPLVQIYEIEQHKIETWREIYLQGCFKPLVSISPNDSLFEAVYTL 300
Query: 301 IKNRIHRLPVLDPVSGNVLHILTHKRLLKFLHIFGSLLPRPSFLYRTIQDLGIGTFRDLA 360
IKNRIHRLPVLDPVSGNVLHILTHKRLLKFLHIFGSLLPRPSFLYRTIQDLGIGTFRDLA
Sbjct: 301 IKNRIHRLPVLDPVSGNVLHILTHKRLLKFLHIFGSLLPRPSFLYRTIQDLGIGTFRDLA 360
Query: 361 VVLETAPILTALDIFVDRRVSALPVVNECGQVVGLYSRFDVIHLAAQQTYNHLDMSVGEA 420
VVLETAPILTALDIFVDRRVSALPVVNECGQVVGLYSRFDVIHLAAQQTYNHLDMSVGEA
Sbjct: 361 VVLETAPILTALDIFVDRRVSALPVVNECGQVVGLYSRFDVIHLAAQQTYNHLDMSVGEA 420
Query: 421 LRQRTLCLEGVLSCQPHESLGEVIDRIAREQVHRLVLVDETQHLLGVVSLSDILQALVLS 480
LRQRTLCLEGVLSCQPHESLGEVIDRIAREQVHRLVLVDETQHLLGVVSLSDILQALVLS
Sbjct: 421 LRQRTLCLEGVLSCQPHESLGEVIDRIAREQVHRLVLVDETQHLLGVVSLSDILQALVLS 480
Query: 481 PAGIDALGA 489
PAGIDALGA
Sbjct: 481 PAGIDALGA 489
>gi|100913192 AMP-activated protein kinase gamma2 subunit isoform c
[Homo sapiens]
Length = 525
Score = 420 bits (1079), Expect = e-117
Identities = 200/316 (63%), Positives = 267/316 (84%), Gaps = 1/316 (0%)
Query: 169 KLGWDDE-LRKPGAQIYMRFMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAA 227
KL ++DE + + +YMRFM+ H CYD + TSSKLV+FDT L++KKAFFALVANGVRAA
Sbjct: 201 KLEFEDEAVEDSESGVYMRFMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAA 260
Query: 228 PLWDSKKQSFVGMLTITDFILVLHRYYRSPLVQIYEIEQHKIETWREIYLQGCFKPLVSI 287
PLW+SKKQSFVGMLTITDFI +LHRYY+SP+VQIYE+E+HKIETWRE+YLQ FKPLV+I
Sbjct: 261 PLWESKKQSFVGMLTITDFINILHRYYKSPMVQIYELEEHKIETWRELYLQETFKPLVNI 320
Query: 288 SPNDSLFEAVYTLIKNRIHRLPVLDPVSGNVLHILTHKRLLKFLHIFGSLLPRPSFLYRT 347
SP+ SLF+AVY+LIKN+IHRLPV+DP+SGN L+ILTHKR+LKFL +F S +P+P+F+ +
Sbjct: 321 SPDASLFDAVYSLIKNKIHRLPVIDPISGNALYILTHKRILKFLQLFMSDMPKPAFMKQN 380
Query: 348 IQDLGIGTFRDLAVVLETAPILTALDIFVDRRVSALPVVNECGQVVGLYSRFDVIHLAAQ 407
+ +LGIGT+ ++A + PI+ AL+IFV+RR+SALPVV+E G+VV +YS+FDVI+LAA+
Sbjct: 381 LDELGIGTYHNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINLAAE 440
Query: 408 QTYNHLDMSVGEALRQRTLCLEGVLSCQPHESLGEVIDRIAREQVHRLVLVDETQHLLGV 467
+TYN+LD++V +AL+ R+ EGV+ C E L ++DRI R +VHRLV+V+E ++G+
Sbjct: 441 KTYNNLDITVTQALQHRSQYFEGVVKCNKLEILETIVDRIVRAEVHRLVVVNEADSIVGI 500
Query: 468 VSLSDILQALVLSPAG 483
+SLSDILQAL+L+PAG
Sbjct: 501 ISLSDILQALILTPAG 516
>gi|100913189 AMP-activated protein kinase gamma2 subunit isoform b
[Homo sapiens]
Length = 328
Score = 420 bits (1079), Expect = e-117
Identities = 200/316 (63%), Positives = 267/316 (84%), Gaps = 1/316 (0%)
Query: 169 KLGWDDE-LRKPGAQIYMRFMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAA 227
KL ++DE + + +YMRFM+ H CYD + TSSKLV+FDT L++KKAFFALVANGVRAA
Sbjct: 4 KLEFEDEAVEDSESGVYMRFMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAA 63
Query: 228 PLWDSKKQSFVGMLTITDFILVLHRYYRSPLVQIYEIEQHKIETWREIYLQGCFKPLVSI 287
PLW+SKKQSFVGMLTITDFI +LHRYY+SP+VQIYE+E+HKIETWRE+YLQ FKPLV+I
Sbjct: 64 PLWESKKQSFVGMLTITDFINILHRYYKSPMVQIYELEEHKIETWRELYLQETFKPLVNI 123
Query: 288 SPNDSLFEAVYTLIKNRIHRLPVLDPVSGNVLHILTHKRLLKFLHIFGSLLPRPSFLYRT 347
SP+ SLF+AVY+LIKN+IHRLPV+DP+SGN L+ILTHKR+LKFL +F S +P+P+F+ +
Sbjct: 124 SPDASLFDAVYSLIKNKIHRLPVIDPISGNALYILTHKRILKFLQLFMSDMPKPAFMKQN 183
Query: 348 IQDLGIGTFRDLAVVLETAPILTALDIFVDRRVSALPVVNECGQVVGLYSRFDVIHLAAQ 407
+ +LGIGT+ ++A + PI+ AL+IFV+RR+SALPVV+E G+VV +YS+FDVI+LAA+
Sbjct: 184 LDELGIGTYHNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINLAAE 243
Query: 408 QTYNHLDMSVGEALRQRTLCLEGVLSCQPHESLGEVIDRIAREQVHRLVLVDETQHLLGV 467
+TYN+LD++V +AL+ R+ EGV+ C E L ++DRI R +VHRLV+V+E ++G+
Sbjct: 244 KTYNNLDITVTQALQHRSQYFEGVVKCNKLEILETIVDRIVRAEVHRLVVVNEADSIVGI 303
Query: 468 VSLSDILQALVLSPAG 483
+SLSDILQAL+L+PAG
Sbjct: 304 ISLSDILQALILTPAG 319
>gi|33186925 AMP-activated protein kinase gamma2 subunit isoform a
[Homo sapiens]
Length = 569
Score = 420 bits (1079), Expect = e-117
Identities = 200/316 (63%), Positives = 267/316 (84%), Gaps = 1/316 (0%)
Query: 169 KLGWDDE-LRKPGAQIYMRFMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAA 227
KL ++DE + + +YMRFM+ H CYD + TSSKLV+FDT L++KKAFFALVANGVRAA
Sbjct: 245 KLEFEDEAVEDSESGVYMRFMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAA 304
Query: 228 PLWDSKKQSFVGMLTITDFILVLHRYYRSPLVQIYEIEQHKIETWREIYLQGCFKPLVSI 287
PLW+SKKQSFVGMLTITDFI +LHRYY+SP+VQIYE+E+HKIETWRE+YLQ FKPLV+I
Sbjct: 305 PLWESKKQSFVGMLTITDFINILHRYYKSPMVQIYELEEHKIETWRELYLQETFKPLVNI 364
Query: 288 SPNDSLFEAVYTLIKNRIHRLPVLDPVSGNVLHILTHKRLLKFLHIFGSLLPRPSFLYRT 347
SP+ SLF+AVY+LIKN+IHRLPV+DP+SGN L+ILTHKR+LKFL +F S +P+P+F+ +
Sbjct: 365 SPDASLFDAVYSLIKNKIHRLPVIDPISGNALYILTHKRILKFLQLFMSDMPKPAFMKQN 424
Query: 348 IQDLGIGTFRDLAVVLETAPILTALDIFVDRRVSALPVVNECGQVVGLYSRFDVIHLAAQ 407
+ +LGIGT+ ++A + PI+ AL+IFV+RR+SALPVV+E G+VV +YS+FDVI+LAA+
Sbjct: 425 LDELGIGTYHNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINLAAE 484
Query: 408 QTYNHLDMSVGEALRQRTLCLEGVLSCQPHESLGEVIDRIAREQVHRLVLVDETQHLLGV 467
+TYN+LD++V +AL+ R+ EGV+ C E L ++DRI R +VHRLV+V+E ++G+
Sbjct: 485 KTYNNLDITVTQALQHRSQYFEGVVKCNKLEILETIVDRIVRAEVHRLVVVNEADSIVGI 544
Query: 468 VSLSDILQALVLSPAG 483
+SLSDILQAL+L+PAG
Sbjct: 545 ISLSDILQALILTPAG 560
>gi|4506061 AMP-activated protein kinase, noncatalytic gamma-1
subunit isoform 1 [Homo sapiens]
Length = 331
Score = 396 bits (1017), Expect = e-110
Identities = 193/298 (64%), Positives = 246/298 (82%)
Query: 183 IYMRFMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAPLWDSKKQSFVGMLT 242
+Y FM+ H CYD + TSSKLV+FDT L++KKAFFALV NGVRAAPLWDSKKQSFVGMLT
Sbjct: 28 VYTSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLT 87
Query: 243 ITDFILVLHRYYRSPLVQIYEIEQHKIETWREIYLQGCFKPLVSISPNDSLFEAVYTLIK 302
ITDFI +LHRYY+S LVQIYE+E+HKIETWRE+YLQ FKPLV ISPN SLF+AV +LI+
Sbjct: 88 ITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIR 147
Query: 303 NRIHRLPVLDPVSGNVLHILTHKRLLKFLHIFGSLLPRPSFLYRTIQDLGIGTFRDLAVV 362
N+IHRLPV+DP SGN L+ILTHKR+LKFL +F + P+P F+ +++++L IGT+ ++A+V
Sbjct: 148 NKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMV 207
Query: 363 LETAPILTALDIFVDRRVSALPVVNECGQVVGLYSRFDVIHLAAQQTYNHLDMSVGEALR 422
T P+ AL IFV RVSALPVV+E G+VV +YS+FDVI+LAA++TYN+LD+SV +AL+
Sbjct: 208 RTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQ 267
Query: 423 QRTLCLEGVLSCQPHESLGEVIDRIAREQVHRLVLVDETQHLLGVVSLSDILQALVLS 480
R+ EGVL C HE+L +I+R+ +VHRLV+VDE + G+VSLSDILQALVL+
Sbjct: 268 HRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQALVLT 325
>gi|47132575 AMP-activated protein kinase, noncatalytic gamma-1
subunit isoform 2 [Homo sapiens]
Length = 247
Score = 305 bits (781), Expect = 6e-83
Identities = 150/241 (62%), Positives = 197/241 (81%)
Query: 240 MLTITDFILVLHRYYRSPLVQIYEIEQHKIETWREIYLQGCFKPLVSISPNDSLFEAVYT 299
MLTITDFI +LHRYY+S LVQIYE+E+HKIETWRE+YLQ FKPLV ISPN SLF+AV +
Sbjct: 1 MLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSS 60
Query: 300 LIKNRIHRLPVLDPVSGNVLHILTHKRLLKFLHIFGSLLPRPSFLYRTIQDLGIGTFRDL 359
LI+N+IHRLPV+DP SGN L+ILTHKR+LKFL +F + P+P F+ +++++L IGT+ ++
Sbjct: 61 LIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANI 120
Query: 360 AVVLETAPILTALDIFVDRRVSALPVVNECGQVVGLYSRFDVIHLAAQQTYNHLDMSVGE 419
A+V T P+ AL IFV RVSALPVV+E G+VV +YS+FDVI+LAA++TYN+LD+SV +
Sbjct: 121 AMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTK 180
Query: 420 ALRQRTLCLEGVLSCQPHESLGEVIDRIAREQVHRLVLVDETQHLLGVVSLSDILQALVL 479
AL+ R+ EGVL C HE+L +I+R+ +VHRLV+VDE + G+VSLSDILQALVL
Sbjct: 181 ALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQALVL 240
Query: 480 S 480
+
Sbjct: 241 T 241
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 36.2 bits (82), Expect = 0.069
Identities = 48/183 (26%), Positives = 63/183 (34%), Gaps = 46/183 (25%)
Query: 38 PSPAVTSSSER---IRGKRRAKALRWTRQKSVEEGEPPG--QGEGPRSRPAAESTGLEAT 92
P P S E ++G+ A + Q+ + GE P Q EG SR +E L T
Sbjct: 1235 PQPQAEGSQEASWGVQGRAEALGKVESEQEELGSGEIPEGPQEEGEESREESEEDELGET 1294
Query: 93 FPKTTPLA---------QADPAGVGTPP-------TGWD----------CLPSDCTASAA 126
P +TPL + DP G PP GWD PS+
Sbjct: 1295 LPDSTPLGFYLRSPTSPRWDPTGEQRPPPQGETGKEGWDPAVLASEGLEAPPSEKEEGEE 1354
Query: 127 GS---------STDDVELATEFPATEAWECELEGLLEERPALCLSPQAPFPKLGWDDELR 177
G S + +L TE P E+ L + P L L P A WD +
Sbjct: 1355 GEEECGRDSDLSEEFEDLGTEAPFLPGVPGEVAEPLGQVPQLLLDPAA------WDRDGE 1408
Query: 178 KPG 180
G
Sbjct: 1409 SDG 1411
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 35.0 bits (79), Expect = 0.15
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 5/121 (4%)
Query: 12 TPSWSSLGGSEHQEMSFLEQENSSSWPSPAVTSSSERIRGKRR----AKALRWTRQKSVE 67
+P+ ++ H E S +Q+ + S P +S + I R L RQ+ ++
Sbjct: 17 SPAAAATEARLHPEGSSRKQQRAQSPARPRDSSLRQTIAATRSPVGAGTKLNSVRQQQLQ 76
Query: 68 EGEPPGQGEGPRSRPAAESTGLEATFPKTTPLAQADPA-GVGTPPTGWDCLPSDCTASAA 126
+ + G G R+ P A G K TPLA A G P G + P+ A+
Sbjct: 77 QQQQQGNKTGSRTGPPASIRGGGGGAEKATPLAPKGAAPGAVQPVAGAEAAPAATLAALG 136
Query: 127 G 127
G
Sbjct: 137 G 137
>gi|178557734 microtubule-associated protein tau isoform 6 [Homo
sapiens]
Length = 776
Score = 33.9 bits (76), Expect = 0.34
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 20 GSEHQEMS------FLEQENSSSWPSPAVTSSSERIRGKRRAKALRWTRQKSVEEGEPPG 73
G HQ MS L + + P+ T + G+ + L+ + + PP
Sbjct: 144 GLSHQLMSGMPGAPLLPEGPREATRQPSGTGPEDTEGGRHAPELLKHQLLGDLHQEGPPL 203
Query: 74 QGEGPRSRPAA-----ESTGLEATFPKTTPLAQADPAGVGTPP 111
+G G + RP + E ++ + P+ +P ++A PA G PP
Sbjct: 204 KGAGGKERPGSKEEVDEDRDVDESSPQDSPPSKASPAQDGRPP 246
>gi|82534351 microtubule-associated protein tau isoform 1 [Homo
sapiens]
Length = 758
Score = 33.9 bits (76), Expect = 0.34
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 20 GSEHQEMS------FLEQENSSSWPSPAVTSSSERIRGKRRAKALRWTRQKSVEEGEPPG 73
G HQ MS L + + P+ T + G+ + L+ + + PP
Sbjct: 144 GLSHQLMSGMPGAPLLPEGPREATRQPSGTGPEDTEGGRHAPELLKHQLLGDLHQEGPPL 203
Query: 74 QGEGPRSRPAA-----ESTGLEATFPKTTPLAQADPAGVGTPP 111
+G G + RP + E ++ + P+ +P ++A PA G PP
Sbjct: 204 KGAGGKERPGSKEEVDEDRDVDESSPQDSPPSKASPAQDGRPP 246
>gi|169167405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 141
Score = 33.9 bits (76), Expect = 0.34
Identities = 39/141 (27%), Positives = 52/141 (36%), Gaps = 15/141 (10%)
Query: 38 PSPAVTSSSERIRGKRRAKALRWTRQKSVEEGEPPGQGEGPRSRPAAESTGLEATFPKTT 97
P PA T+S R+ +RR A R G +G G R RP S E P+
Sbjct: 12 PGPASTASRTRVHQQRRGSAPRGGESPDPGAGAGDRRG-GARQRPQRLS---EPRQPQAV 67
Query: 98 PLAQADPAGVGTPPTGWDCLPSDCTASAAGSSTDDVELATEFPATEAWECELEGLLEERP 157
P+ A +G PPT + ++S G ++ L P C L L
Sbjct: 68 PVPGAASYRLGLPPT-----LTSLSSSVPGRASPAARLRNRRPG-----CSLATRLRPDG 117
Query: 158 ALCLSPQAPF-PKLGWDDELR 177
S AP P+ D E R
Sbjct: 118 VWATSGPAPLTPRRAGDQEGR 138
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 33.9 bits (76), Expect = 0.34
Identities = 45/181 (24%), Positives = 65/181 (35%), Gaps = 31/181 (17%)
Query: 3 PGLEHALRRTPSWSSLGGSEHQEMS-----FLEQENSSSWPSPAVTSSSERIRGKRRAKA 57
P L+ +L + PS SS G + L + +SS +P ++S +ER
Sbjct: 2224 PSLDSSLPQLPSPSSPGAPLLSNLPRPASPALSEGSSSEATTPVISSVAERF-------- 2275
Query: 58 LRWTRQKSVEEGEPPGQGEGPRSRPAAESTGLEATFPKTTPLAQADPAGVGTPPTGWDCL 117
S+E E P PAA S TPL+ A PA + L
Sbjct: 2276 -----SPSLEAAEQESGELDPGMEPAAHSLW------DLTPLSPAPPASLDLALAPAPSL 2324
Query: 118 PSDCTASAAGSSTDDVELATEFPA---TEAWECELEGLLEERPALCLSPQAPFPKLGWDD 174
P D + E ATE P+ + +C G E P +P P P ++
Sbjct: 2325 PGDMGDGILPCHLECSEAATEKPSPFQVPSEDCAANGPTETSP----NPPGPAPAKAENE 2380
Query: 175 E 175
E
Sbjct: 2381 E 2381
>gi|4557489 cone-rod homeobox protein [Homo sapiens]
Length = 299
Score = 33.9 bits (76), Expect = 0.34
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 53 RRAKALRWTRQKSVEEGEPPGQGEGPRSRPAAESTGLEATFPKTTPLAQADPAGVG---T 109
RRAK R RQ+ ++ +PPG G+ ++RPA G T P+ + DP G+ +
Sbjct: 90 RRAKC-RQQRQQQKQQQQPPG-GQA-KARPAKRKAG---TSPRPSTDVCPDPLGISDSYS 143
Query: 110 PPTGWDCLPSDCTASAAGSSTDDV-ELATEFPATEAWECELEGLLEERPALCLSPQA 165
PP LP + +T + A+E P EA + GL+ P+L +P A
Sbjct: 144 PP-----LPGPSGSPTTAVATVSIWSPASESPLPEA---QRAGLVASGPSLTSAPYA 192
>gi|33598929 scavenger receptor class F, member 1 isoform 1
precursor [Homo sapiens]
Length = 830
Score = 33.5 bits (75), Expect = 0.45
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 13 PSWSSLGGSEHQEMSFLEQENSSSWPSPAVTSSSERIRGKRRAKALRWTRQ-----KSVE 67
P SSL ++ +SF E + + + SS E R+ K L Q + E
Sbjct: 577 PRTSSLARAKRPSVSFAE---GTKFAPQSRRSSGELSSPLRKPKRLSRGAQSGPEGREAE 633
Query: 68 EGEPPGQGEGPRSRPAAESTGLEATFPKTTPL 99
E P + E P S PAA S G AT + PL
Sbjct: 634 ESTGPEEAEAPESFPAAASPGDSATGHRRPPL 665
>gi|145309306 scavenger receptor class F, member 1 isoform 5
precursor [Homo sapiens]
Length = 744
Score = 33.5 bits (75), Expect = 0.45
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 13 PSWSSLGGSEHQEMSFLEQENSSSWPSPAVTSSSERIRGKRRAKALRWTRQ-----KSVE 67
P SSL ++ +SF E + + + SS E R+ K L Q + E
Sbjct: 491 PRTSSLARAKRPSVSFAE---GTKFAPQSRRSSGELSSPLRKPKRLSRGAQSGPEGREAE 547
Query: 68 EGEPPGQGEGPRSRPAAESTGLEATFPKTTPL 99
E P + E P S PAA S G AT + PL
Sbjct: 548 ESTGPEEAEAPESFPAAASPGDSATGHRRPPL 579
>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 33.1 bits (74), Expect = 0.59
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 31/95 (32%)
Query: 36 SWPSPAVTSSS------------------ERIRGKRRAKALRWTRQKSVEEGEP----PG 73
SWP P +SS R R +RR+++LRW R++S P P
Sbjct: 16 SWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPS 75
Query: 74 QGEGPRS---------RPAAESTGLEATFPKTTPL 99
GP S PA+E + + P+++ L
Sbjct: 76 GPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSL 110
>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 33.1 bits (74), Expect = 0.59
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 31/95 (32%)
Query: 36 SWPSPAVTSSS------------------ERIRGKRRAKALRWTRQKSVEEGEP----PG 73
SWP P +SS R R +RR+++LRW R++S P P
Sbjct: 16 SWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPS 75
Query: 74 QGEGPRS---------RPAAESTGLEATFPKTTPL 99
GP S PA+E + + P+++ L
Sbjct: 76 GPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSL 110
>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
sapiens]
Length = 231
Score = 33.1 bits (74), Expect = 0.59
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 31/95 (32%)
Query: 36 SWPSPAVTSSS------------------ERIRGKRRAKALRWTRQKSVEEGEP----PG 73
SWP P +SS R R +RR+++LRW R++S P P
Sbjct: 16 SWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPS 75
Query: 74 QGEGPRS---------RPAAESTGLEATFPKTTPL 99
GP S PA+E + + P+++ L
Sbjct: 76 GPSGPSSPGGPSSGGASPASEGSAMSPPPPRSSSL 110
>gi|21536409 bridging integrator 1 isoform 5 [Homo sapiens]
Length = 518
Score = 33.1 bits (74), Expect = 0.59
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 11/116 (9%)
Query: 38 PSPAVTSSSERIRGKRRAKALRWTRQKSVEEGEPPGQGEGPR-SRPAAESTGLEATFPKT 96
P P + S+ ++ ++ T + P E P S P+ E + E TF +
Sbjct: 311 PPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPTESPAGSLPSGEPSAAEGTFAVS 370
Query: 97 TPLAQADPAGV----------GTPPTGWDCLPSDCTASAAGSSTDDVELATEFPAT 142
P A+P GT P P + AS A SS+ + FPAT
Sbjct: 371 WPSQTAEPGPAQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPAT 426
>gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 33.1 bits (74), Expect = 0.59
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 15/74 (20%)
Query: 13 PSWSSLGGSEHQEMSFLEQENSSSWPSPAVTSSSERIRGKRRAKALRWTRQKSVEEGEPP 72
P W S GS + E+++ W +RR +A W+ S P
Sbjct: 77 PKWHSRDGSSQSDSG--EEQSRGQW-------------ARRRRRARSWSPSSSASSSASP 121
Query: 73 GQGEGPRSRPAAES 86
G+ + PR+ AA S
Sbjct: 122 GRSQSPRAAAAALS 135
>gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 33.1 bits (74), Expect = 0.59
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 15/74 (20%)
Query: 13 PSWSSLGGSEHQEMSFLEQENSSSWPSPAVTSSSERIRGKRRAKALRWTRQKSVEEGEPP 72
P W S GS + E+++ W +RR +A W+ S P
Sbjct: 77 PKWHSRDGSSQSDSG--EEQSRGQW-------------ARRRRRARSWSPSSSASSSASP 121
Query: 73 GQGEGPRSRPAAES 86
G+ + PR+ AA S
Sbjct: 122 GRSQSPRAAAAALS 135
>gi|178557736 microtubule-associated protein tau isoform 5 [Homo
sapiens]
Length = 412
Score = 32.7 bits (73), Expect = 0.77
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 60 WTRQKSVEEGEPPGQGEGPRSRPA---AESTGLEATFPKTTPLAQADPAGVGTPPTGWDC 116
+T + E G E P P +E G E + K+TP A+A+ AG+G P+ D
Sbjct: 29 YTMHQDQEGDTDAGLKESPLQTPTEDGSEEPGSETSDAKSTPTAEAEEAGIGDTPSLEDE 88
Query: 117 LPSDCTASAAGSSTDD 132
T + S + D
Sbjct: 89 AAGHVTQARMVSKSKD 104
>gi|29171711 melanoma antigen family B, 1 [Homo sapiens]
Length = 347
Score = 32.7 bits (73), Expect = 0.77
Identities = 32/111 (28%), Positives = 41/111 (36%), Gaps = 7/111 (6%)
Query: 40 PAVTSSSERIRGKRRAKALRWTRQKSVEEGEPPGQGEGPRSRPAAESTGLEATFPKTTPL 99
P S R R KRR KA T+ V + E P S P T P ++P
Sbjct: 2 PRGQKSKLRAREKRR-KAREETQGLKVAHATAAEKEECPSSSPVLGDT------PTSSPA 54
Query: 100 AQADPAGVGTPPTGWDCLPSDCTASAAGSSTDDVELATEFPATEAWECELE 150
A G PPT CT S G+ E A+ AT + E ++
Sbjct: 55 AGIPQKPQGAPPTTTAAAAVSCTESDEGAKCQGEENASFSQATTSTESSVK 105
>gi|29171709 melanoma antigen family B, 1 [Homo sapiens]
Length = 347
Score = 32.7 bits (73), Expect = 0.77
Identities = 32/111 (28%), Positives = 41/111 (36%), Gaps = 7/111 (6%)
Query: 40 PAVTSSSERIRGKRRAKALRWTRQKSVEEGEPPGQGEGPRSRPAAESTGLEATFPKTTPL 99
P S R R KRR KA T+ V + E P S P T P ++P
Sbjct: 2 PRGQKSKLRAREKRR-KAREETQGLKVAHATAAEKEECPSSSPVLGDT------PTSSPA 54
Query: 100 AQADPAGVGTPPTGWDCLPSDCTASAAGSSTDDVELATEFPATEAWECELE 150
A G PPT CT S G+ E A+ AT + E ++
Sbjct: 55 AGIPQKPQGAPPTTTAAAAVSCTESDEGAKCQGEENASFSQATTSTESSVK 105
>gi|29171707 melanoma antigen family B, 1 [Homo sapiens]
Length = 347
Score = 32.7 bits (73), Expect = 0.77
Identities = 32/111 (28%), Positives = 41/111 (36%), Gaps = 7/111 (6%)
Query: 40 PAVTSSSERIRGKRRAKALRWTRQKSVEEGEPPGQGEGPRSRPAAESTGLEATFPKTTPL 99
P S R R KRR KA T+ V + E P S P T P ++P
Sbjct: 2 PRGQKSKLRAREKRR-KAREETQGLKVAHATAAEKEECPSSSPVLGDT------PTSSPA 54
Query: 100 AQADPAGVGTPPTGWDCLPSDCTASAAGSSTDDVELATEFPATEAWECELE 150
A G PPT CT S G+ E A+ AT + E ++
Sbjct: 55 AGIPQKPQGAPPTTTAAAAVSCTESDEGAKCQGEENASFSQATTSTESSVK 105
>gi|237512982 voltage-gated sodium channel type V alpha isoform f
[Homo sapiens]
Length = 1962
Score = 32.3 bits (72), Expect = 1.0
Identities = 36/166 (21%), Positives = 59/166 (35%), Gaps = 11/166 (6%)
Query: 62 RQKSVEEGEPPGQGEGPRSRPAAESTGLEATFPKTTPLAQADPAGVGTPPTGWDCLPSD- 120
++ EEGE PGQG P + + T + + +GT P D
Sbjct: 1024 KETRFEEGEQPGQGTPGDPEPVCVPIAVAES--DTDDQEEDEENSLGTEEESSKQTPEDS 1081
Query: 121 CTASAAGSSTDDVELATEFP-----ATEAWECELEGLLEERPALCLSPQAPFPKLGWDDE 175
C+ + T+ EL + P + +C EG + P + K+ W
Sbjct: 1082 CSEGSTADMTNTAELLEQIPDLGQDVKDPEDCFTEGCVRRCPCCAVDTTQAPGKVWW--R 1139
Query: 176 LRKPGAQIYMR-FMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALV 220
LRK I + + + + +S L D LE +K L+
Sbjct: 1140 LRKTCYHIVEHSWFETFIIFMILLSSGALAFEDIYLEERKTIKVLL 1185
>gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens]
Length = 725
Score = 32.3 bits (72), Expect = 1.0
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 11/131 (8%)
Query: 47 ERIRGKRRAKALRWTRQKSVEEGEPPGQGEGPRSRPAAESTGLEATFPKTTPLAQADPAG 106
ER R + + L +++ G P Q GP S P++ ++G + P + P A +
Sbjct: 59 ERFRARGGLRPLLALLRRAAAAGSAPSQA-GPGSAPSSAASGASSPAPASGPAPSAVSSS 117
Query: 107 VGTPPT--------GWDCLPSDCTASAAGSSTDDVELATEFPATEAWECELEGLLEERPA 158
TPP L CT A T+ L P +C ++ R A
Sbjct: 118 SPTPPVRLRKTLDLALSILADCCTEGAC--RTEVRRLGGILPLVTILQCMKTDSIQNRTA 175
Query: 159 LCLSPQAPFPK 169
L A P+
Sbjct: 176 RALGNLAMEPE 186
>gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens]
Length = 935
Score = 32.3 bits (72), Expect = 1.0
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 11/131 (8%)
Query: 47 ERIRGKRRAKALRWTRQKSVEEGEPPGQGEGPRSRPAAESTGLEATFPKTTPLAQADPAG 106
ER R + + L +++ G P Q GP S P++ ++G + P + P A +
Sbjct: 59 ERFRARGGLRPLLALLRRAAAAGSAPSQA-GPGSAPSSAASGASSPAPASGPAPSAVSSS 117
Query: 107 VGTPPT--------GWDCLPSDCTASAAGSSTDDVELATEFPATEAWECELEGLLEERPA 158
TPP L CT A T+ L P +C ++ R A
Sbjct: 118 SPTPPVRLRKTLDLALSILADCCTEGAC--RTEVRRLGGILPLVTILQCMKTDSIQNRTA 175
Query: 159 LCLSPQAPFPK 169
L A P+
Sbjct: 176 RALGNLAMEPE 186
>gi|21536402 bridging integrator 1 isoform 2 [Homo sapiens]
Length = 550
Score = 32.0 bits (71), Expect = 1.3
Identities = 37/144 (25%), Positives = 55/144 (38%), Gaps = 23/144 (15%)
Query: 9 LRRTPSWSSLGGSEHQEMSFLEQENSSSWPSPAVTSSSERIRGKRRAKALRWTRQKSVEE 68
L ++PS G ++ S L+ + P P VTS + +++ W + E
Sbjct: 328 LPKSPSQFEAPGPFSEQASLLDLDFD---PLPPVTSPVKAPTPS--GQSIPWDLWEPTES 382
Query: 69 GEPPGQGEGPRSRPAAESTGLEATFPKTTPLAQADPAGV----------GTPPTGWDCLP 118
P G S P+ E + E TF + P A+P GT P P
Sbjct: 383 --PAG------SLPSGEPSAAEGTFAVSWPSQTAEPGPAQPAEASEVAGGTQPAAGAQEP 434
Query: 119 SDCTASAAGSSTDDVELATEFPAT 142
+ AS A SS+ + FPAT
Sbjct: 435 GETAASEAASSSLPAVVVETFPAT 458
>gi|21536400 bridging integrator 1 isoform 1 [Homo sapiens]
Length = 593
Score = 32.0 bits (71), Expect = 1.3
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 23/141 (16%)
Query: 12 TPSWSSLGGSEHQEMSFLEQENSSSWPSPAVTSSSERIRGKRRAKALRWTRQKSVEEGEP 71
TPS G ++ S L+ + P P VTS + +++ W + E P
Sbjct: 374 TPSQFEAPGPFSEQASLLDLDFD---PLPPVTSPVKAPTPS--GQSIPWDLWEPTES--P 426
Query: 72 PGQGEGPRSRPAAESTGLEATFPKTTPLAQADPAGV----------GTPPTGWDCLPSDC 121
G S P+ E + E TF + P A+P GT P P +
Sbjct: 427 AG------SLPSGEPSAAEGTFAVSWPSQTAEPGPAQPAEASEVAGGTQPAAGAQEPGET 480
Query: 122 TASAAGSSTDDVELATEFPAT 142
AS A SS+ + FPAT
Sbjct: 481 AASEAASSSLPAVVVETFPAT 501
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,996,558
Number of Sequences: 37866
Number of extensions: 988067
Number of successful extensions: 3651
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 3556
Number of HSP's gapped (non-prelim): 165
length of query: 489
length of database: 18,247,518
effective HSP length: 106
effective length of query: 383
effective length of database: 14,233,722
effective search space: 5451515526
effective search space used: 5451515526
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.