Guide to the Human Genome
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Name: SNIP1 Sequence: fasta or formatted (396aa) NCBI GI: 21314720
Description:

Smad nuclear interacting protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         17           1
 C cysteine            0.3          1           1
 D aspartate           5.8         23           2
 E glutamate          10.4         41           6
 F phenylalanine       2.0          8           1
 G glycine             7.6         30           4
 H histidine           4.5         18           2
 I isoleucine          2.5         10           2
 K lysine              6.6         26           3
 L leucine             4.5         18           2
 M methionine          0.5          2           1
 N asparagine          3.8         15           2
 P proline             7.3         29           2
 Q glutamine           4.0         16           1
 R arginine           14.9         59           3
 S serine              9.3         37           2
 T threonine           2.5         10           1
 V valine              6.1         24           3
 W tryptophan          0.3          1           1
 Y tyrosine            2.8         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Smad nuclear interacting protein 
SFRS12                0.055   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.055   splicing factor, arginine/serine-rich 12 isoform b [...
PPP1R8                0.053   protein phosphatase 1 regulatory inhibitor subunit 8...
SLC4A1AP              0.051   solute carrier family 4 (anion exchanger), member 1...
LOC100170229          0.045   hypothetical protein LOC100170229 
DDX46                 0.045   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
RSRC2                 0.045   arginine/serine-rich coiled-coil 2 isoform a 
SFRS4                 0.042   splicing factor, arginine/serine-rich 4 
LOC100286959          0.042   PREDICTED: hypothetical protein XP_002343921 
PRPF38B               0.041   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
KIAA0284              0.041   hypothetical protein LOC283638 isoform 1 
ZC3H13                0.037   zinc finger CCCH-type containing 13 
SFRS11                0.037   splicing factor, arginine/serine-rich 11 
C2orf16               0.037   hypothetical protein LOC84226 
SRRM2                 0.037   splicing coactivator subunit SRm300 
SFRS18                0.036   splicing factor, arginine/serine-rich 130 
SFRS18                0.036   splicing factor, arginine/serine-rich 130 
LOC100133599          0.036   PREDICTED: hypothetical protein 
KIAA1853              0.036   KIAA1853 protein 
RBM25                 0.034   RNA binding motif protein 25 
FLG                   0.034   filaggrin 
LOC100133599          0.034   PREDICTED: hypothetical protein 
FLJ37078              0.034   hypothetical protein LOC222183 
LOC100131202          0.033   PREDICTED: hypothetical protein 
PPIG                  0.032   peptidylprolyl isomerase G 
CIR1                  0.032   CBF1 interacting corepressor 
RNASEN                0.031   ribonuclease III, nuclear isoform 1 
MLLT1                 0.031   myeloid/lymphoid or mixed-lineage leukemia (trithora...
PHRF1                 0.031   PHD and ring finger domains 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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