BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|46409276 transmembrane protein 207 [Homo sapiens] (146 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|46409276 transmembrane protein 207 [Homo sapiens] 305 9e-84 gi|30425506 transmembrane protein 52 [Homo sapiens] 37 0.008 gi|23308507 hypothetical protein LOC120939 [Homo sapiens] 33 0.086 gi|4505463 contactin associated protein 1 precursor [Homo sapiens] 30 0.73 gi|4507117 Stannin [Homo sapiens] 29 1.2 gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 28 2.1 gi|5803023 lectin, mannose-binding 2 precursor [Homo sapiens] 28 2.1 gi|112421108 capicua homolog [Homo sapiens] 28 2.1 gi|33356148 formin-like 1 [Homo sapiens] 28 2.8 gi|110735443 delta-like 1 [Homo sapiens] 27 4.7 gi|239751284 PREDICTED: hypothetical protein XP_002347797 [Homo ... 27 4.7 gi|193211395 calcium homeostasis modulator 3 [Homo sapiens] 27 4.7 gi|39930575 shisa homolog 4 [Homo sapiens] 27 4.7 gi|27436867 slit and trk like 4 protein [Homo sapiens] 27 4.7 gi|15208643 ADP-ribosylation factor domain protein 1 isoform gam... 27 6.2 gi|15208641 ADP-ribosylation factor domain protein 1 isoform bet... 27 6.2 gi|4502197 ADP-ribosylation factor domain protein 1 isoform alph... 27 6.2 gi|9507143 G protein-coupled receptor 173 [Homo sapiens] 27 6.2 gi|106507239 EGFR-coamplified and overexpressed protein [Homo sa... 27 8.0 gi|189027139 chromosome 9 open reading frame 61 [Homo sapiens] 27 8.0 gi|189027135 chromosome 9 open reading frame 61 [Homo sapiens] 27 8.0 gi|169162161 PREDICTED: similar to EGFR-coamplified and overexpr... 27 8.0 gi|89040494 PREDICTED: hypothetical protein [Homo sapiens] 27 8.0 gi|239744142 PREDICTED: hypothetical protein isoform 1 [Homo sap... 27 8.0 gi|239744140 PREDICTED: hypothetical protein [Homo sapiens] 27 8.0 gi|169191513 PREDICTED: hypothetical protein isoform 1 [Homo sap... 27 8.0 gi|113411383 PREDICTED: similar to EGFR-coamplified and overexpr... 27 8.0 gi|20357552 cortactin isoform a [Homo sapiens] 27 8.0 gi|20357556 cortactin isoform b [Homo sapiens] 27 8.0 gi|194294554 SET binding protein 1 isoform a [Homo sapiens] 27 8.0 >gi|46409276 transmembrane protein 207 [Homo sapiens] Length = 146 Score = 305 bits (781), Expect = 9e-84 Identities = 146/146 (100%), Positives = 146/146 (100%) Query: 1 MSRSRLFSVTSAISTIGILCLPLFQLVLSDLPCEEDEMCVNYNDQHPNGWYIWILLLLVL 60 MSRSRLFSVTSAISTIGILCLPLFQLVLSDLPCEEDEMCVNYNDQHPNGWYIWILLLLVL Sbjct: 1 MSRSRLFSVTSAISTIGILCLPLFQLVLSDLPCEEDEMCVNYNDQHPNGWYIWILLLLVL 60 Query: 61 VAALLCGAVVLCLQCWLRRPRIDSHRRTMAVFAVGDLDSIYGTEAAVSPTVGIHLQTQTP 120 VAALLCGAVVLCLQCWLRRPRIDSHRRTMAVFAVGDLDSIYGTEAAVSPTVGIHLQTQTP Sbjct: 61 VAALLCGAVVLCLQCWLRRPRIDSHRRTMAVFAVGDLDSIYGTEAAVSPTVGIHLQTQTP 120 Query: 121 DLYPVPAPCFGPLGSPPPYEEIVKTT 146 DLYPVPAPCFGPLGSPPPYEEIVKTT Sbjct: 121 DLYPVPAPCFGPLGSPPPYEEIVKTT 146 >gi|30425506 transmembrane protein 52 [Homo sapiens] Length = 209 Score = 36.6 bits (83), Expect = 0.008 Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 29/148 (19%) Query: 18 ILCLPLFQLVLSDLPCEEDEMCVNYNDQHPNGWYIWILLLLVLVAALLCGAVVLCLQ-CW 76 +L LP L +D C+ + C + + W++ ++LL VL+ LLCG C++ C Sbjct: 23 LLPLPQVALGFADGSCDPSDQCPP-QARWSSLWHVGLILLAVLL-LLLCGVTAGCVRFCC 80 Query: 77 LRR-----PRIDSHRRTMAVFAVGDLDSIYGTEAAVSPTVGIHLQTQTPDLYPVPAPCFG 131 LR+ P + R+ V AV +DS ++ V TV + Q P +P P FG Sbjct: 81 LRKQAQAQPHLPPARQPCDV-AVIPMDS----DSPVHSTVTSYSSVQYPLGMRLPLP-FG 134 Query: 132 PLG---------------SPPPYEEIVK 144 L PP Y+E VK Sbjct: 135 ELDLDSMAPPAYSLYTPEPPPSYDEAVK 162 >gi|23308507 hypothetical protein LOC120939 [Homo sapiens] Length = 163 Score = 33.1 bits (74), Expect = 0.086 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Query: 32 PCEEDEMCVNYNDQHPNGWYIWILLLLVLVAALLCGAVVLCLQC 75 PC C+ + H WYIW LL+++ LLCG LC +C Sbjct: 7 PCCISSCCLTTDWVHL--WYIW-LLVVIGALLLLCGLTSLCFRC 47 >gi|4505463 contactin associated protein 1 precursor [Homo sapiens] Length = 1384 Score = 30.0 bits (66), Expect = 0.73 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 8/114 (7%) Query: 27 VLSDLPCEEDEMCV--NYNDQHPNGWYIWILLLLVLVAALLCGAVVLCLQCWLRRPRIDS 84 ++S++P E D + ++ H GW +LL LVA LL G V + + +L+ R Sbjct: 1256 LVSEVPPELDPWYLPPDFPYYHDEGWVA--ILLGFLVAFLLLGLVGMLVLFYLQNHRYKG 1313 Query: 85 HRRTMAVFAVGDLDSIYGTEAAVSPTVGIHLQTQTPDLYPVPAPCFGPLGSPPP 138 T A + G++ + PT G Q TP P AP P +P P Sbjct: 1314 SYHTNEPKAAHEYHP--GSKPPL-PTSG-PAQVPTPTAAPNQAPASAPAPAPTP 1363 >gi|4507117 Stannin [Homo sapiens] Length = 88 Score = 29.3 bits (64), Expect = 1.2 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Query: 44 DQHPNGWYIWILLLLVLVAALLCGAVVLCLQCWLRRPRIDSHRRTMAVFAVGD 96 D P + ++++L+ +AAL GA++L C+LR RI ++ G+ Sbjct: 5 DHSPTTGVVTVIVILIAIAAL--GALILGCWCYLRLQRISQSEDEESIVGDGE 55 >gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] Length = 2968 Score = 28.5 bits (62), Expect = 2.1 Identities = 14/36 (38%), Positives = 16/36 (44%) Query: 102 GTEAAVSPTVGIHLQTQTPDLYPVPAPCFGPLGSPP 137 G + A G L +T L P P PC PL PP Sbjct: 304 GAKEAARQDEGARLLRRTETLLPGPRPCPSPLPPPP 339 >gi|5803023 lectin, mannose-binding 2 precursor [Homo sapiens] Length = 356 Score = 28.5 bits (62), Expect = 2.1 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 21/73 (28%) Query: 18 ILCLPLFQLVLSDLPCEE---------------------DEMCVNYNDQHPNGWYIWILL 56 I+ + LFQL++ P EE D+ N+ GW +++LL Sbjct: 268 IISMKLFQLMVEHTPDEESIDWTKIEPSVNFLKSPKDNVDDPTGNFRSGPLTGWRVFLLL 327 Query: 57 LLVLVAALLCGAV 69 L L+ ++C V Sbjct: 328 LCALLGIVVCAVV 340 >gi|112421108 capicua homolog [Homo sapiens] Length = 1608 Score = 28.5 bits (62), Expect = 2.1 Identities = 13/34 (38%), Positives = 17/34 (50%) Query: 105 AAVSPTVGIHLQTQTPDLYPVPAPCFGPLGSPPP 138 AA +PT GI + P P A P+ +PPP Sbjct: 878 AATAPTPGIPILQSVPSAPPPKAQSVSPVQAPPP 911 >gi|33356148 formin-like 1 [Homo sapiens] Length = 1100 Score = 28.1 bits (61), Expect = 2.8 Identities = 12/31 (38%), Positives = 16/31 (51%) Query: 108 SPTVGIHLQTQTPDLYPVPAPCFGPLGSPPP 138 +PT G+ + +PDL P P G PPP Sbjct: 516 APTPGVPTGSPSPDLAPAAEPAPGAAPPPPP 546 >gi|110735443 delta-like 1 [Homo sapiens] Length = 723 Score = 27.3 bits (59), Expect = 4.7 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Query: 22 PLFQLVLSDLPCEEDEMCVNYNDQHPNGWYIWILL----LLVLVAALLCGAVVLCLQCWL 77 P Q +L +LP + + + G + W+ + +LVL+ L C AVV+C++ L Sbjct: 514 PNCQFLLPELPPGPAVVDLTEKLEGQGGPFPWVAVCAGVILVLMLLLGCAAVVVCVRLRL 573 Query: 78 RRPR 81 ++ R Sbjct: 574 QKHR 577 >gi|239751284 PREDICTED: hypothetical protein XP_002347797 [Homo sapiens] Length = 1674 Score = 27.3 bits (59), Expect = 4.7 Identities = 13/39 (33%), Positives = 17/39 (43%) Query: 99 SIYGTEAAVSPTVGIHLQTQTPDLYPVPAPCFGPLGSPP 137 + YG + +SP V P L P PAP P+ P Sbjct: 252 TFYGLKPDLSPEVXXXXXXLLPALAPTPAPALAPVPVSP 290 >gi|193211395 calcium homeostasis modulator 3 [Homo sapiens] Length = 344 Score = 27.3 bits (59), Expect = 4.7 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 8/56 (14%) Query: 25 QLVLSDLPCEEDEMCVNYNDQHPNGWYI--------WILLLLVLVAALLCGAVVLC 72 QL L+ +PC+EDE+ + + Y+ W + LL+++AA L + C Sbjct: 149 QLFLAKVPCKEDELVRDSPARKAVSRYLRCLSQAIGWSVTLLLIIAAFLARCLRPC 204 >gi|39930575 shisa homolog 4 [Homo sapiens] Length = 197 Score = 27.3 bits (59), Expect = 4.7 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 11/115 (9%) Query: 35 EDEMCVNYNDQHPNGWYIWILLLLVLVAALLCGAVVLCLQCWLRRPRIDSHRRTMAVFAV 94 + + C+ ++ + G ++L + +VA +C + C + RR ++ S + Sbjct: 74 QQKHCLAFSPKTIAGIASAVILFVAVVATTICCFLCSCCYLYRRRQQLQSPFEGQEIPMT 133 Query: 95 G-DLDSIYG-----TEAAVSPTVGIHLQTQTP----DLYPVPAPCFGPLGSPPPY 139 G + +Y P G P LYP P + P +PPPY Sbjct: 134 GIPVQPVYPYPQDPKAGPAPPQPGFMYPPSGPAPQYPLYPAGPPVYNP-AAPPPY 187 >gi|27436867 slit and trk like 4 protein [Homo sapiens] Length = 837 Score = 27.3 bits (59), Expect = 4.7 Identities = 10/18 (55%), Positives = 12/18 (66%) Query: 113 IHLQTQTPDLYPVPAPCF 130 + QT+ P L P PAPCF Sbjct: 330 VSYQTRVPPLTPCPAPCF 347 >gi|15208643 ADP-ribosylation factor domain protein 1 isoform gamma [Homo sapiens] Length = 546 Score = 26.9 bits (58), Expect = 6.2 Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 20 CLPLFQLVLSDLPCEEDEMCVNYNDQHPNGWYIWILLLLVLVAALLCGAVVLCLQC 75 C+ + L + C ++EM ++ D H IW+ + LL CL C Sbjct: 287 CIRAYFYDLHETLCRQEEMALSVVDAHVREKLIWLRQQQEDMTILLSEVSAACLHC 342 >gi|15208641 ADP-ribosylation factor domain protein 1 isoform beta [Homo sapiens] Length = 569 Score = 26.9 bits (58), Expect = 6.2 Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 20 CLPLFQLVLSDLPCEEDEMCVNYNDQHPNGWYIWILLLLVLVAALLCGAVVLCLQC 75 C+ + L + C ++EM ++ D H IW+ + LL CL C Sbjct: 287 CIRAYFYDLHETLCRQEEMALSVVDAHVREKLIWLRQQQEDMTILLSEVSAACLHC 342 >gi|4502197 ADP-ribosylation factor domain protein 1 isoform alpha [Homo sapiens] Length = 574 Score = 26.9 bits (58), Expect = 6.2 Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 20 CLPLFQLVLSDLPCEEDEMCVNYNDQHPNGWYIWILLLLVLVAALLCGAVVLCLQC 75 C+ + L + C ++EM ++ D H IW+ + LL CL C Sbjct: 287 CIRAYFYDLHETLCRQEEMALSVVDAHVREKLIWLRQQQEDMTILLSEVSAACLHC 342 >gi|9507143 G protein-coupled receptor 173 [Homo sapiens] Length = 373 Score = 26.9 bits (58), Expect = 6.2 Identities = 14/37 (37%), Positives = 18/37 (48%) Query: 104 EAAVSPTVGIHLQTQTPDLYPVPAPCFGPLGSPPPYE 140 +AAV+P V L APC+G G+P P E Sbjct: 332 QAAVNPIVCFLLNKDLKKCLRTHAPCWGTGGAPAPRE 368 >gi|106507239 EGFR-coamplified and overexpressed protein [Homo sapiens] Length = 172 Score = 26.6 bits (57), Expect = 8.0 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 3/21 (14%) Query: 124 PVPAPCFGPLGSPPPYEEIVK 144 P PA C P PPPYE++VK Sbjct: 153 PPPAYCNTP---PPPYEQVVK 170 >gi|189027139 chromosome 9 open reading frame 61 [Homo sapiens] Length = 450 Score = 26.6 bits (57), Expect = 8.0 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 9/33 (27%) Query: 120 PDLYPVP---------APCFGPLGSPPPYEEIV 143 PD+ P+P F PL PPPYE +V Sbjct: 169 PDVIPLPHIYGARIKGVEVFCPLDPPPPYEAVV 201 >gi|189027135 chromosome 9 open reading frame 61 [Homo sapiens] Length = 450 Score = 26.6 bits (57), Expect = 8.0 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 9/33 (27%) Query: 120 PDLYPVP---------APCFGPLGSPPPYEEIV 143 PD+ P+P F PL PPPYE +V Sbjct: 169 PDVIPLPHIYGARIKGVEVFCPLDPPPPYEAVV 201 >gi|169162161 PREDICTED: similar to EGFR-coamplified and overexpressed protein [Homo sapiens] Length = 172 Score = 26.6 bits (57), Expect = 8.0 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 3/21 (14%) Query: 124 PVPAPCFGPLGSPPPYEEIVK 144 P PA C P PPPYE++VK Sbjct: 153 PPPAYCNTP---PPPYEQVVK 170 >gi|89040494 PREDICTED: hypothetical protein [Homo sapiens] Length = 187 Score = 26.6 bits (57), Expect = 8.0 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%) Query: 99 SIYGTEAAVSPTVGIHLQTQTPDLYPVPAPC----FGPLGSPPP 138 ++YG A V P + D + P PC FG +PPP Sbjct: 41 ALYGPRARVLPARDLSSARARRDAFAEPRPCHVGLFGSREAPPP 84 >gi|239744142 PREDICTED: hypothetical protein isoform 1 [Homo sapiens] Length = 629 Score = 26.6 bits (57), Expect = 8.0 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%) Query: 100 IYGTEAAVSPTVGIHLQTQTPDLYPVPAPCFGPL----GSPP 137 + G +P + + T P P P P GPL G+PP Sbjct: 131 VLGPGVTANPGTSLSVFTALPFTTPAPGPAHGPLLVTAGAPP 172 >gi|239744140 PREDICTED: hypothetical protein [Homo sapiens] Length = 878 Score = 26.6 bits (57), Expect = 8.0 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%) Query: 100 IYGTEAAVSPTVGIHLQTQTPDLYPVPAPCFGPL----GSPP 137 + G +P + + T P P P P GPL G+PP Sbjct: 131 VLGPGVTANPGTSLSVFTALPFTTPAPGPAHGPLLVTAGAPP 172 >gi|169191513 PREDICTED: hypothetical protein isoform 1 [Homo sapiens] Length = 878 Score = 26.6 bits (57), Expect = 8.0 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%) Query: 100 IYGTEAAVSPTVGIHLQTQTPDLYPVPAPCFGPL----GSPP 137 + G +P + + T P P P P GPL G+PP Sbjct: 131 VLGPGVTANPGTSLSVFTALPFTTPAPGPAHGPLLVTAGAPP 172 >gi|113411383 PREDICTED: similar to EGFR-coamplified and overexpressed protein [Homo sapiens] Length = 172 Score = 26.6 bits (57), Expect = 8.0 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 3/21 (14%) Query: 124 PVPAPCFGPLGSPPPYEEIVK 144 P PA C P PPPYE++VK Sbjct: 153 PPPAYCNTP---PPPYEQVVK 170 >gi|20357552 cortactin isoform a [Homo sapiens] Length = 550 Score = 26.6 bits (57), Expect = 8.0 Identities = 12/26 (46%), Positives = 15/26 (57%) Query: 116 QTQTPDLYPVPAPCFGPLGSPPPYEE 141 +TQTP + P P P L S P YE+ Sbjct: 398 KTQTPPVSPAPQPTEERLPSSPVYED 423 >gi|20357556 cortactin isoform b [Homo sapiens] Length = 513 Score = 26.6 bits (57), Expect = 8.0 Identities = 12/26 (46%), Positives = 15/26 (57%) Query: 116 QTQTPDLYPVPAPCFGPLGSPPPYEE 141 +TQTP + P P P L S P YE+ Sbjct: 361 KTQTPPVSPAPQPTEERLPSSPVYED 386 >gi|194294554 SET binding protein 1 isoform a [Homo sapiens] Length = 1596 Score = 26.6 bits (57), Expect = 8.0 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 8/41 (19%) Query: 98 DSIYGTEAAVSPTVGIHLQTQTPDLYPVPAPCFGPLGSPPP 138 D+I T AV IH+ + P L P P P PL PPP Sbjct: 1503 DTIMATIEAV-----IHMAREAPPLPPPPPP---PLPPPPP 1535 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.325 0.141 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,362,849 Number of Sequences: 37866 Number of extensions: 287758 Number of successful extensions: 1508 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 1485 Number of HSP's gapped (non-prelim): 39 length of query: 146 length of database: 18,247,518 effective HSP length: 92 effective length of query: 54 effective length of database: 14,763,846 effective search space: 797247684 effective search space used: 797247684 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.