Guide to the Human Genome
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Name: C12orf59 Sequence: fasta or formatted (163aa) NCBI GI: 23308507
Description:

hypothetical protein LOC120939

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5          9           2
 C cysteine            6.7         11           3
 D aspartate           4.3          7           1
 E glutamate           4.9          8           2
 F phenylalanine       2.5          4           1
 G glycine             5.5          9           2
 H histidine           3.1          5           1
 I isoleucine          4.3          7           1
 K lysine              1.8          3           1
 L leucine            12.9         21           4
 M methionine          1.8          3           1
 N asparagine          1.2          2           1
 P proline             8.6         14           3
 Q glutamine           4.9          8           2
 R arginine            4.3          7           2
 S serine             10.4         17           2
 T threonine           6.7         11           2
 V valine              6.1         10           2
 W tryptophan          3.1          5           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC120939 
TMEM52                0.161   transmembrane protein 52 
LOC729086             0.028   PREDICTED: similar to EGFR-coamplified and overexpr...
LOC729086             0.028   PREDICTED: similar to EGFR-coamplified and overexpr...
LOC100292488          0.025   PREDICTED: hypothetical protein 
LOC100289965          0.025   PREDICTED: hypothetical protein XP_002347141 
LOC100289007          0.025   PREDICTED: hypothetical protein XP_002342994 
TMEM207               0.025   transmembrane protein 207 
ECOP                  0.025   EGFR-coamplified and overexpressed protein 
SYT2                  0.022   synaptotagmin II 
SYT2                  0.022   synaptotagmin II 
DNAJC5                0.015   DnaJ (Hsp40) homolog, subfamily C, member 5 
NCAPG2                0.015   leucine zipper protein 5 
CEP120                0.015   coiled-coil domain containing 100 
LOC728341             0.012   PREDICTED: keratin-associated protein 9-2-like 1-li...
ZBTB4                 0.012   zinc finger and BTB domain containing 4 
ZBTB4                 0.012   zinc finger and BTB domain containing 4 
KRTAP9-8              0.012   keratin associated protein 9.8 
KRTAP9-3              0.012   keratin associated protein 9.3 
AFAP1L2               0.012   KIAA1914 protein isoform 1 
AFAP1L2               0.012   KIAA1914 protein isoform 2 
CLSTN1                0.012   calsyntenin 1 isoform 1 
CLSTN1                0.012   calsyntenin 1 isoform 2 
LOC732428             0.009   PREDICTED: keratin-associated protein 9-2-like 2-li...
ADAMTS14              0.009   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS14              0.009   ADAM metallopeptidase with thrombospondin type 1 mo...
WBP1                  0.009   WW domain binding protein 1 
IL12RB2               0.009   interleukin 12 receptor, beta 2 precursor 
PROM2                 0.009   prominin 2 
ETV3L                 0.009   ets variant 3-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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