Guide to the Human Genome
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Name: C20orf70 Sequence: fasta or formatted (249aa) NCBI GI: 45592961
Description:

chromosome 20 open reading frame 70

Referenced in:

Lung

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         11           1
 C cysteine            1.2          3           1
 D aspartate           6.0         15           2
 E glutamate           4.4         11           1
 F phenylalanine       1.6          4           1
 G glycine             4.8         12           1
 H histidine           2.0          5           1
 I isoleucine          8.4         21           2
 K lysine              7.6         19           1
 L leucine            17.3         43           2
 M methionine          0.4          1           1
 N asparagine          6.4         16           2
 P proline             4.0         10           1
 Q glutamine           6.0         15           2
 R arginine            0.4          1           1
 S serine              8.0         20           2
 T threonine           6.8         17           1
 V valine              9.2         23           2
 W tryptophan          0.8          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromosome 20 open reading frame 70 
PLUNC                 0.099   palate, lung and nasal epithelium associated precurso...
PLUNC                 0.099   palate, lung and nasal epithelium associated precurs...
C20orf114             0.073   LPLUNC1 protein precursor 
C20orf71              0.044   short long palate, lung and nasal epithelium carcin...
C20orf71              0.040   short long palate, lung and nasal epithelium carcin...
TCOF1                 0.018   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.018   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.018   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.018   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.018   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.018   Treacher Collins-Franceschetti syndrome 1 isoform c ...
GOLGA4                0.011   golgi autoantigen, golgin subfamily a, 4 
INTS12                0.009   integrator complex subunit 12 
INTS12                0.009   integrator complex subunit 12 
PTX3                  0.007   pentraxin 3 
GEMIN5                0.007   gemin 5 
EPS8L3                0.007   epidermal growth factor receptor pathway substrate 8...
EPS8L3                0.007   epidermal growth factor receptor pathway substrate 8...
EPS8L3                0.007   epidermal growth factor receptor pathway substrate 8...
CACNA2D1              0.007   calcium channel, voltage-dependent, alpha 2/delta su...
SYNE2                 0.007   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.007   spectrin repeat containing, nuclear envelope 2 isof...
OSBPL3                0.007   oxysterol-binding protein-like protein 3 isoform d [...
OSBPL3                0.007   oxysterol-binding protein-like protein 3 isoform c [...
OSBPL3                0.007   oxysterol-binding protein-like protein 3 isoform b [...
OSBPL3                0.007   oxysterol-binding protein-like protein 3 isoform a [...
DOCK7                 0.007   dedicator of cytokinesis 7 
TTC23                 0.007   tetratricopeptide repeat domain 23 
TTC23                 0.007   tetratricopeptide repeat domain 23 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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