Guide to the Human Genome
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Name: C20orf71 Sequence: fasta or formatted (218aa) NCBI GI: 109627656
Description:

short long palate, lung and nasal epithelium carcinoma associated 3 isoform 2

Referenced in:

Lung

Other entries for this name:
alt prot [254aa] short long palate, lung and nasal epithelium carcinoma associated...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         18           2
 C cysteine            2.3          5           1
 D aspartate           3.2          7           1
 E glutamate           6.9         15           1
 F phenylalanine       2.8          6           1
 G glycine             5.5         12           1
 H histidine           5.0         11           2
 I isoleucine          6.9         15           2
 K lysine              5.5         12           1
 L leucine            12.4         27           2
 M methionine          2.8          6           2
 N asparagine          4.1          9           2
 P proline             6.4         14           2
 Q glutamine           7.3         16           4
 R arginine            4.1          9           2
 S serine              6.9         15           2
 T threonine           1.8          4           1
 V valine              5.5         12           2
 W tryptophan          1.8          4           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   short long palate, lung and nasal epithelium carcin... 
C20orf71              0.950   short long palate, lung and nasal epithelium carcin...
PLUNC                 0.083   palate, lung and nasal epithelium associated precurso...
PLUNC                 0.083   palate, lung and nasal epithelium associated precurs...
C20orf70              0.043   chromosome 20 open reading frame 70 
C20orf186             0.021   antimicrobial peptide RY2G5 
BPIL2                 0.010   bactericidal/permeability-increasing protein-like 2 ...
ERO1L                 0.010   ERO1-like 
LOC100293739          0.007   PREDICTED: hypothetical protein 
LOC100294421          0.007   PREDICTED: hypothetical protein 
MKRN3                 0.007   makorin ring finger protein 3 
KRT6C                 0.007   keratin 6C 
KRT6A                 0.007   keratin 6A 
KRT6B                 0.007   keratin 6B 
KIAA1383              0.007   hypothetical protein LOC54627 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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