Guide to the Human Genome
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Name: PLUNC Sequence: fasta or formatted (256aa) NCBI GI: 7706119
Description:

palate, lung and nasal epithelium associated precursor

Referenced in:

Lung

Other entries for this name:
alt mRNA [256aa] palate, lung and nasal epithelium associated precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5          9           1
 C cysteine            0.8          2           1
 D aspartate           4.7         12           1
 E glutamate           2.3          6           1
 F phenylalanine       1.6          4           1
 G glycine            12.9         33           3
 H histidine           2.0          5           1
 I isoleucine          7.4         19           2
 K lysine              3.1          8           1
 L leucine            22.7         58           2
 M methionine          1.2          3           1
 N asparagine          4.7         12           2
 P proline             7.0         18           1
 Q glutamine           4.7         12           1
 R arginine            2.0          5           1
 S serine              4.7         12           1
 T threonine           5.5         14           1
 V valine              8.6         22           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   palate, lung and nasal epithelium associated precurso... 
PLUNC                 1.000   palate, lung and nasal epithelium associated precurs...
C20orf114             0.105   LPLUNC1 protein precursor 
C20orf70              0.095   chromosome 20 open reading frame 70 
C20orf71              0.089   short long palate, lung and nasal epithelium carcin...
C20orf71              0.074   short long palate, lung and nasal epithelium carcin...
C20orf186             0.072   antimicrobial peptide RY2G5 
C20orf185             0.059   antimicrobial peptide RYA3 
RASA1                 0.013   RAS p21 protein activator 1 isoform 1 
MLLT6                 0.013   myeloid/lymphoid or mixed-lineage leukemia (trithora...
EMILIN3               0.013   elastin microfibril interfacer 3 
LOC197350             0.011   PREDICTED: hypothetical protein LOC197350 
LOC197350             0.011   PREDICTED: hypothetical protein LOC197350 
KIAA1310              0.011   hypothetical protein LOC55683 isoform a 
KIAA1310              0.011   hypothetical protein LOC55683 isoform b 
COG2                  0.008   component of oligomeric golgi complex 2 isoform 2 [...
COG2                  0.008   component of oligomeric golgi complex 2 isoform 1 [Ho...
LOC100293110          0.006   PREDICTED: hypothetical protein 
ERF                   0.006   Ets2 repressor factor 
CRB2                  0.006   crumbs homolog 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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