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Search of human proteins with 45580709
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|45580709 unc-93 homolog B1 [Homo sapiens]
(597 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45580709 unc-93 homolog B1 [Homo sapiens] 1220 0.0
gi|239747143 PREDICTED: hypothetical protein XP_002343924 [Homo ... 438 e-123
gi|239755577 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 418 e-117
gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 418 e-117
gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C. elegans... 369 e-102
gi|29336077 unc-93 homolog A isoform 1 [Homo sapiens] 120 4e-27
gi|221139828 unc-93 homolog A isoform 2 [Homo sapiens] 115 9e-26
gi|40548372 tetratricopeptide repeat domain 15 [Homo sapiens] 37 0.040
gi|52353302 transmembrane protein 198 [Homo sapiens] 37 0.052
gi|5729790 CCCTC-binding factor [Homo sapiens] 37 0.067
gi|239756307 PREDICTED: similar to ubiquitin-associated protein ... 36 0.088
gi|239750857 PREDICTED: similar to ubiquitin-associated protein ... 36 0.088
gi|239745220 PREDICTED: hypothetical protein [Homo sapiens] 36 0.088
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 36 0.088
gi|59814146 BTB (POZ) domain containing 1 isoform 2 [Homo sapiens] 36 0.088
gi|13376848 BTB (POZ) domain containing 1 isoform 1 [Homo sapiens] 36 0.088
gi|185136021 spinster homolog 2 [Homo sapiens] 35 0.20
gi|4505949 proopiomelanocortin preproprotein [Homo sapiens] 35 0.20
gi|80861463 proopiomelanocortin preproprotein [Homo sapiens] 35 0.20
gi|195947401 doublesex and mab-3 related transcription factor 2 ... 35 0.26
gi|5729806 doublesex and mab-3 related transcription factor 2 is... 35 0.26
gi|153945850 doublesex and mab-3 related transcription factor 2 ... 35 0.26
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 34 0.33
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ... 34 0.33
gi|38201625 eukaryotic translation initiation factor 4 gamma, 1 ... 34 0.33
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ... 34 0.33
gi|38201619 eukaryotic translation initiation factor 4 gamma, 1 ... 34 0.33
gi|93204881 Rab interacting lysosomal protein [Homo sapiens] 34 0.44
gi|13236549 major facilitator superfamily domain containing 11 [... 34 0.44
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 33 0.57
>gi|45580709 unc-93 homolog B1 [Homo sapiens]
Length = 597
Score = 1220 bits (3156), Expect = 0.0
Identities = 597/597 (100%), Positives = 597/597 (100%)
Query: 1 MEAEPPLYPMAGAAGPQGDEDLLGVPDGPEAPLDELVGAYPNYNEEEEERRYYRRKRLGV 60
MEAEPPLYPMAGAAGPQGDEDLLGVPDGPEAPLDELVGAYPNYNEEEEERRYYRRKRLGV
Sbjct: 1 MEAEPPLYPMAGAAGPQGDEDLLGVPDGPEAPLDELVGAYPNYNEEEEERRYYRRKRLGV 60
Query: 61 LKNVLAASAGGMLTYGVYLGLLQMQLILHYDETYREVKYGNMGLPDIDSKMLMGINVTPI 120
LKNVLAASAGGMLTYGVYLGLLQMQLILHYDETYREVKYGNMGLPDIDSKMLMGINVTPI
Sbjct: 61 LKNVLAASAGGMLTYGVYLGLLQMQLILHYDETYREVKYGNMGLPDIDSKMLMGINVTPI 120
Query: 121 AALLYTPVLIRFFGTKWMMFLAVGIYALFVSTNYWERYYTLVPSAVALGMAIVPLWASMG 180
AALLYTPVLIRFFGTKWMMFLAVGIYALFVSTNYWERYYTLVPSAVALGMAIVPLWASMG
Sbjct: 121 AALLYTPVLIRFFGTKWMMFLAVGIYALFVSTNYWERYYTLVPSAVALGMAIVPLWASMG 180
Query: 181 NYITRMAQKYHEYSHYKEQDGQGMKQRPPRGSHAPYLLVFQAIFYSFFHLSFACAQLPMI 240
NYITRMAQKYHEYSHYKEQDGQGMKQRPPRGSHAPYLLVFQAIFYSFFHLSFACAQLPMI
Sbjct: 181 NYITRMAQKYHEYSHYKEQDGQGMKQRPPRGSHAPYLLVFQAIFYSFFHLSFACAQLPMI 240
Query: 241 YFLNHYLYDLNHTLYNVQSCGTNSHGILSGFNKTVLRTLPRSGNLIVVESVLMAVAFLAM 300
YFLNHYLYDLNHTLYNVQSCGTNSHGILSGFNKTVLRTLPRSGNLIVVESVLMAVAFLAM
Sbjct: 241 YFLNHYLYDLNHTLYNVQSCGTNSHGILSGFNKTVLRTLPRSGNLIVVESVLMAVAFLAM 300
Query: 301 LLVLGLCGAAYRPTEEIDLRSVGWGNIFQLPFKHVRDYRLRHLVPFFIYSGFEVLFACTG 360
LLVLGLCGAAYRPTEEIDLRSVGWGNIFQLPFKHVRDYRLRHLVPFFIYSGFEVLFACTG
Sbjct: 301 LLVLGLCGAAYRPTEEIDLRSVGWGNIFQLPFKHVRDYRLRHLVPFFIYSGFEVLFACTG 360
Query: 361 IALGYGVCSVGLERLAYLLVAYSLGASAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILF 420
IALGYGVCSVGLERLAYLLVAYSLGASAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILF
Sbjct: 361 IALGYGVCSVGLERLAYLLVAYSLGASAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILF 420
Query: 421 FWAPVPRVLQHSWILYVAAALWGVGSALNKTGLSTLLGILYEDKERQDFIFTIYHWWQAV 480
FWAPVPRVLQHSWILYVAAALWGVGSALNKTGLSTLLGILYEDKERQDFIFTIYHWWQAV
Sbjct: 421 FWAPVPRVLQHSWILYVAAALWGVGSALNKTGLSTLLGILYEDKERQDFIFTIYHWWQAV 480
Query: 481 AIFTVYLGSSLHMKAKLAVLLVTLVAAAVSYLRMEQKLRRGVAPRQPRIPRPQHKVRGYR 540
AIFTVYLGSSLHMKAKLAVLLVTLVAAAVSYLRMEQKLRRGVAPRQPRIPRPQHKVRGYR
Sbjct: 481 AIFTVYLGSSLHMKAKLAVLLVTLVAAAVSYLRMEQKLRRGVAPRQPRIPRPQHKVRGYR 540
Query: 541 YLEEDNSDESDAEGEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQGGDGPEEQ 597
YLEEDNSDESDAEGEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQGGDGPEEQ
Sbjct: 541 YLEEDNSDESDAEGEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQGGDGPEEQ 597
>gi|239747143 PREDICTED: hypothetical protein XP_002343924 [Homo
sapiens]
Length = 319
Score = 438 bits (1127), Expect = e-123
Identities = 218/232 (93%), Positives = 221/232 (95%), Gaps = 2/232 (0%)
Query: 364 GYGVCSVGLERLAYLLVAYSLGASAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWA 423
GYGVCSVGLE LAYLLV YSLGASA SLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWA
Sbjct: 4 GYGVCSVGLEWLAYLLVPYSLGASATSLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWA 63
Query: 424 PVPRVLQHSWILYVAAALWGVGSALNKTGLSTLLGILYEDKERQDFIFTIYHWWQAVAIF 483
PVPRVLQHSWILYVAAALW VGS+LNKTGLSTLLGILYEDKERQDFIFTIYHWWQAVAIF
Sbjct: 64 PVPRVLQHSWILYVAAALWVVGSSLNKTGLSTLLGILYEDKERQDFIFTIYHWWQAVAIF 123
Query: 484 TVYLGSSLHMKAKLAVLLVTLVAAAVSYLRMEQKLRRGVAPRQPRIPRPQHKVRGYRYLE 543
TVYLGSSLHMKAKLA+LLVTLVAA VSYLRMEQKLRRGVAPRQPRIPRPQHKVRGYRYLE
Sbjct: 124 TVYLGSSLHMKAKLALLLVTLVAATVSYLRMEQKLRRGVAPRQPRIPRPQHKVRGYRYLE 183
Query: 544 EDNSDESDAEGEHGDG--AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQGGDG 593
EDNSDESDAEG+ GDG AE EAPPAGPRPGPEPAGLGRRPCPYEQAQG G
Sbjct: 184 EDNSDESDAEGDLGDGEEAEAEAPPAGPRPGPEPAGLGRRPCPYEQAQGAMG 235
>gi|239755577 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 312
Score = 418 bits (1074), Expect = e-117
Identities = 206/217 (94%), Positives = 210/217 (96%), Gaps = 1/217 (0%)
Query: 380 VAYSLGASAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILYVAA 439
+AYSLG SAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWIL VAA
Sbjct: 1 MAYSLGTSAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAA 60
Query: 440 ALWGVGSALNKTGLSTLLGILYEDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAV 499
ALWGVGSALN TGLSTLLGILY+DKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLA+
Sbjct: 61 ALWGVGSALNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAM 120
Query: 500 LLVTLVAAAVSYLRMEQKLRRGVAPRQPRIPRPQHKVRGYRYLEEDNSDESDAEGEHGDG 559
LLVTLVAAAVSYLRMEQKLRRGVAP QPRIPRPQHKVRGYRYL EDNS+ESDAE EHGDG
Sbjct: 121 LLVTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYL-EDNSEESDAEDEHGDG 179
Query: 560 AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQGGDGPEE 596
AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQ GDGPEE
Sbjct: 180 AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEE 216
>gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 529
Score = 418 bits (1074), Expect = e-117
Identities = 206/217 (94%), Positives = 210/217 (96%), Gaps = 1/217 (0%)
Query: 380 VAYSLGASAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILYVAA 439
+AYSLG SAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWIL VAA
Sbjct: 1 MAYSLGTSAASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAA 60
Query: 440 ALWGVGSALNKTGLSTLLGILYEDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAV 499
ALWGVGSALN TGLSTLLGILY+DKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLA+
Sbjct: 61 ALWGVGSALNNTGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAM 120
Query: 500 LLVTLVAAAVSYLRMEQKLRRGVAPRQPRIPRPQHKVRGYRYLEEDNSDESDAEGEHGDG 559
LLVTLVAAAVSYLRMEQKLRRGVAP QPRIPRPQHKVRGYRYL EDNS+ESDAE EHGDG
Sbjct: 121 LLVTLVAAAVSYLRMEQKLRRGVAPPQPRIPRPQHKVRGYRYL-EDNSEESDAEDEHGDG 179
Query: 560 AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQGGDGPEE 596
AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQ GDGPEE
Sbjct: 180 AEEEAPPAGPRPGPEPAGLGRRPCPYEQAQRGDGPEE 216
>gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
[Homo sapiens]
Length = 503
Score = 369 bits (946), Expect = e-102
Identities = 181/191 (94%), Positives = 184/191 (96%), Gaps = 1/191 (0%)
Query: 406 VAGAGVHLLLTFILFFWAPVPRVLQHSWILYVAAALWGVGSALNKTGLSTLLGILYEDKE 465
+AGAGVHLLLTFILFFWAPVPRVLQH WIL VAAALWGVGSALN TGLSTLLGILYEDKE
Sbjct: 1 MAGAGVHLLLTFILFFWAPVPRVLQHIWILCVAAALWGVGSALNNTGLSTLLGILYEDKE 60
Query: 466 RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAVLLVTLVAAAVSYLRMEQKLRRGVAPR 525
RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLA+LLVTLVAAAVSYLRMEQKLRRGVAP
Sbjct: 61 RQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAMLLVTLVAAAVSYLRMEQKLRRGVAPP 120
Query: 526 QPRIPRPQHKVRGYRYLEEDNSDESDAEGEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPY 585
QPRIPRPQHKVRGYRYL EDNS+ESDAE EHGDGAEEEAPPAGPRPGPEPAGLGRRPCPY
Sbjct: 121 QPRIPRPQHKVRGYRYL-EDNSEESDAEDEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPY 179
Query: 586 EQAQGGDGPEE 596
EQAQ GDGPEE
Sbjct: 180 EQAQRGDGPEE 190
>gi|29336077 unc-93 homolog A isoform 1 [Homo sapiens]
Length = 457
Score = 120 bits (301), Expect = 4e-27
Identities = 115/461 (24%), Positives = 192/461 (41%), Gaps = 50/461 (10%)
Query: 61 LKNVLAASAGGMLTYGVYLGLLQMQLILHYDETYREVKYGNMGLPDIDSKMLMGINVTPI 120
L+NVL S G +L + Y GL +Q L Y E G L + ML+
Sbjct: 5 LRNVLVVSFGFLLLFTAYGGLQSLQSSL-----YSEEGLGVTALSTLYGGMLL------- 52
Query: 121 AALLYTPVLIRFFGTKWMMFLAVGIYALFVSTNYWERYYTLVPSAVALGMAIVPLWASMG 180
+++ P+LI G K + L++ Y F N++ +YTL+P+++ LG+ PLW++
Sbjct: 53 SSMFLPPLLIERLGCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQC 112
Query: 181 NYITRMAQKYHEYSHYKEQDGQGMKQRPPRGSHAPYLLVFQAIFYSFFHLSFACAQLPMI 240
Y+T + E + + +D + IF+ F S L I
Sbjct: 113 TYLTITGNTHAEKAGKRGKDMVNQ---------------YFGIFFLIFQSSGVWGNL--I 155
Query: 241 YFLNHYLYDLNHTLYNVQSCGTNSHGILSGFNKTVLRTLPRSGNLIVVESVLMAVAFLAM 300
L TL Q + L T P + + + LA+
Sbjct: 156 SSLVFGQTPSQETLPEEQLTSCGASDCLMATTTTNSTQRPSQQLVYTLLGIYTGSGVLAV 215
Query: 301 LLVLGLCGAAYRPTEEIDLRSVG-------WGNIFQLPFKHVRDYRLRHLVPFFIYSGFE 353
L++ A +P ++ S G W + FK RD RL L+ +YSG +
Sbjct: 216 LMI----AAFLQPIRDVQRESEGEKKSVPFWSTLLST-FKLYRDKRLCLLILLPLYSGLQ 270
Query: 354 VLFACTGIALGYGVCSVGLERLAYLLVAYSLGASAASLL-GLLGLWLPRPVPLVAGAGVH 412
F + Y C++G++ + Y+++ +S + S+L G + + R V V GA H
Sbjct: 271 QGFLSSEYTRSYVTCTLGIQFVGYVMICFSATDALCSVLYGKVSQYTGRAVLYVLGAVTH 330
Query: 413 LLLTFILFFWAPVPRVLQHSWILYVAAALWGVGSALNKTGLSTLLGILYEDKERQDFIFT 472
+ L W P H + +V + LWGV A+ +T + L G+L+E + ++ F
Sbjct: 331 VSCMIALLLWRP---RADHLAVFFVFSGLWGVADAVWQTQNNALYGVLFE--KSKEAAFA 385
Query: 473 IYHWWQAVAIFTVYLGSSLHM--KAKLAVLLVTLVAAAVSY 511
Y W+A+ F + G S+ + KL +LL L V+Y
Sbjct: 386 NYRLWEALG-FVIAFGYSMFLCVHVKLYILLGVLSLTMVAY 425
>gi|221139828 unc-93 homolog A isoform 2 [Homo sapiens]
Length = 415
Score = 115 bits (289), Expect = 9e-26
Identities = 116/454 (25%), Positives = 195/454 (42%), Gaps = 78/454 (17%)
Query: 61 LKNVLAASAGGMLTYGVYLGLLQMQLILHYDETYREVKYGNMGLPDIDSKMLMGINVTPI 120
L+NVL S G +L + Y GL +Q L Y E G L + ML+
Sbjct: 5 LRNVLVVSFGFLLLFTAYGGLQSLQSSL-----YSEEGLGVTALSTLYGGMLL------- 52
Query: 121 AALLYTPVLIRFFGTKWMMFLAVGIYALFVSTNYWERYYTLVPSAVALGMAIVPLWASMG 180
+++ P+LI G K + L++ Y F N++ +YTL+P+++ LG+ PLW++
Sbjct: 53 SSMFLPPLLIERLGCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQC 112
Query: 181 NYITRMAQKYHEYSHYKEQDGQGMKQRPPRGSHAPYLLVFQAIFYSFFHLSFACAQLPMI 240
Y+T + E + + +D +V Q ++ F L F
Sbjct: 113 TYLTITGNTHAEKAGKRGKD-----------------MVNQ--YFGIFFLIF-------- 145
Query: 241 YFLNHYLYDLNHTLYNVQSCGTNSHGILSGFNKTVLRTLPRSGNLIVVESVLMAVAFLAM 300
QS G + I S V P G+ ++ +VLM AFL
Sbjct: 146 -----------------QSSGVWGNLISS----LVFGQTPSQGSGVL--AVLMIAAFLQP 182
Query: 301 LLVLGLCGAAYRPTEEIDLRSVGWGNIFQLPFKHVRDYRLRHLVPFFIYSGFEVLFACTG 360
+ + + E + +SV + + FK RD RL L+ +YSG + F +
Sbjct: 183 IRDV-------QRESEGEKKSVPFWSTLLSTFKLYRDKRLCLLILLPLYSGLQQGFLSSE 235
Query: 361 IALGYGVCSVGLERLAYLLVAYSLGASAASLL-GLLGLWLPRPVPLVAGAGVHLLLTFIL 419
Y C++G++ + Y+++ +S + S+L G + + R V V GA H+ L
Sbjct: 236 YTRSYVTCTLGIQFVGYVMICFSATDALCSVLYGKVSQYTGRAVLYVLGAVTHVSCMIAL 295
Query: 420 FFWAPVPRVLQHSWILYVAAALWGVGSALNKTGLSTLLGILYEDKERQDFIFTIYHWWQA 479
W P H + +V + LWGV A+ +T + L G+L+E + ++ F Y W+A
Sbjct: 296 LLWRP---RADHLAVFFVFSGLWGVADAVWQTQNNALYGVLFE--KSKEAAFANYRLWEA 350
Query: 480 VAIFTVYLGSSLHM--KAKLAVLLVTLVAAAVSY 511
+ F + G S+ + KL +LL L V+Y
Sbjct: 351 LG-FVIAFGYSMFLCVHVKLYILLGVLSLTMVAY 383
>gi|40548372 tetratricopeptide repeat domain 15 [Homo sapiens]
Length = 735
Score = 37.4 bits (85), Expect = 0.040
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 547 SDESDAEGEHGD--GAEEEAPPAGPR-PGPEPAGLGRRPCPYEQAQGGDGPEE 596
SD ++EG+ GD +EA P G PGPEPAG P P +A G PE+
Sbjct: 73 SDSPNSEGDAGDLGRVRDEAEPGGEGDPGPEPAG---TPSPSGEADGDCAPED 122
>gi|52353302 transmembrane protein 198 [Homo sapiens]
Length = 360
Score = 37.0 bits (84), Expect = 0.052
Identities = 66/247 (26%), Positives = 100/247 (40%), Gaps = 43/247 (17%)
Query: 357 ACTGIALGYG---------VCSVGLERLAYLLVAYSLGASAASLLGLLGLWLPR----PV 403
A GIALG G V SVGL + LL L +AA+LLG + P P+
Sbjct: 94 ASAGIALGIGLLCGLVAMLVRSVGLFLVGLLL---GLLLAAAALLGSAPYYQPGSVWGPL 150
Query: 404 PLVAGAGVHLLLTFILFFWAPVPRVLQHSWILYVAAALWGVGSALNKTGLSTLLGILYED 463
L+ G G LL + W PR L AAL + +A + LLG +
Sbjct: 151 GLLLGGG--LLCALLTLRW---PRPLTTLATAVTGAAL--IATAADYFAELLLLGRYVVE 203
Query: 464 KERQDFIFTIYHWWQAVAIFTVYLGSSLHMKAKLAVLLVTLVAAAVSYLRMEQKLRRGVA 523
+ R + + W++ A+ ++ SL + VL+ V A G +
Sbjct: 204 RLRAAPVPPLC--WRSWALLALWPLLSL-----MGVLVQWRVTA------------EGDS 244
Query: 524 PRQPRIPRPQHKVRGYRYLEEDNSDESDAEGEHGDGAEEEAPPAGPRPGPEPAGLGRRPC 583
+ I R + +V+ R ++++ E + + A P A PRPGP RRP
Sbjct: 245 HTEVVISRQRRRVQLMRIRQQEDRKEKRRK-KRPPRAPLRGPRAPPRPGPPDPAYRRRPV 303
Query: 584 PYEQAQG 590
P ++ G
Sbjct: 304 PIKRFNG 310
>gi|5729790 CCCTC-binding factor [Homo sapiens]
Length = 727
Score = 36.6 bits (83), Expect = 0.067
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 537 RGYRYLEEDNSDESDAEGEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQG 590
R R +ED+SD +AE + D +EE P P PEP + P P ++ +G
Sbjct: 600 RKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEPEPQPVTPAPPPAKKRRG 653
>gi|239756307 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 36.2 bits (82), Expect = 0.088
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 523 APRQPRIPRPQHKVRGYRYLEEDNSDESDAEGEHGDGAEEEAPPAGPRPG-PEPAGLGRR 581
AP R P H+ R EE+ DE++A G+EEE P+ +PG P G GRR
Sbjct: 90 APTTIRDPEAGHQERP----EEEGEDEAEASS----GSEEEPAPSSLQPGSPASPGPGRR 141
Query: 582 PCPYEQAQG 590
C + +G
Sbjct: 142 LCSLDVLRG 150
>gi|239750857 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 36.2 bits (82), Expect = 0.088
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 523 APRQPRIPRPQHKVRGYRYLEEDNSDESDAEGEHGDGAEEEAPPAGPRPG-PEPAGLGRR 581
AP R P H+ R EE+ DE++A G+EEE P+ +PG P G GRR
Sbjct: 90 APTTIRDPEAGHQERP----EEEGEDEAEASS----GSEEEPAPSSLQPGSPASPGPGRR 141
Query: 582 PCPYEQAQG 590
C + +G
Sbjct: 142 LCSLDVLRG 150
>gi|239745220 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 36.2 bits (82), Expect = 0.088
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 523 APRQPRIPRPQHKVRGYRYLEEDNSDESDAEGEHGDGAEEEAPPAGPRPG-PEPAGLGRR 581
AP R P H+ R EE+ DE++A G+EEE P+ +PG P G GRR
Sbjct: 90 APTTIRDPEAGHQERP----EEEGEDEAEASS----GSEEEPAPSSLQPGSPASPGPGRR 141
Query: 582 PCPYEQAQG 590
C + +G
Sbjct: 142 LCSLDVLRG 150
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 36.2 bits (82), Expect = 0.088
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 529 IPRPQHKVRGYRYLEEDNSDESDAEGEHGDGAEEEAPPAGPRPGPEPAGLG---RRPCPY 585
+P PQH G R L E +S GD A A PAGPR P+ A R PCP
Sbjct: 619 LPEPQHAKPGPRKLAERGPQDS------GDRA---ASPAGPRKSPQEAAAAPGTREPCPA 669
Query: 586 EQ 587
Q
Sbjct: 670 AQ 671
>gi|59814146 BTB (POZ) domain containing 1 isoform 2 [Homo sapiens]
Length = 385
Score = 36.2 bits (82), Expect = 0.088
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 552 AEGEHGDGAEEEAPPAGPRPGPEPAGLG 579
A GE GAE E PAGP P P P+ LG
Sbjct: 8 AAGEQASGAEAEPGPAGPPPPPSPSSLG 35
>gi|13376848 BTB (POZ) domain containing 1 isoform 1 [Homo sapiens]
Length = 482
Score = 36.2 bits (82), Expect = 0.088
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 552 AEGEHGDGAEEEAPPAGPRPGPEPAGLG 579
A GE GAE E PAGP P P P+ LG
Sbjct: 8 AAGEQASGAEAEPGPAGPPPPPSPSSLG 35
>gi|185136021 spinster homolog 2 [Homo sapiens]
Length = 549
Score = 35.0 bits (79), Expect = 0.20
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Query: 388 AASLLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILYVAAALWGVGSA 447
AA + G LG R V L G +TF F +P+ Q+ W+L ++ L G+G A
Sbjct: 154 AAPIFGYLGDRFNRKVILSCGIFFWSAVTFSSSF---IPQ--QYFWLLVLSRGLVGIGEA 208
Query: 448 LNKTGLSTLLGILYEDKERQDFIFTIYHWWQAVAIFTVYLGSSL 491
T T++G L+ R + Y F + LGS L
Sbjct: 209 SYSTIAPTIIGDLFTKNTRTLMLSVFY--------FAIPLGSGL 244
>gi|4505949 proopiomelanocortin preproprotein [Homo sapiens]
Length = 267
Score = 35.0 bits (79), Expect = 0.20
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 501 LVTLVAAAVSYLRMEQKLRRGVAPRQPRIPRPQHKVRGYRYLEEDNSDESDAEGEHGDGA 560
L+ + A L E + G QP P+ V G+ + S + G G G
Sbjct: 43 LLECIRACKPDLSAETPMFPGNGDEQPLTENPRKYVMGHFRWDRFGRRNSSSSGSSGAGQ 102
Query: 561 EEEAPPAG------PRPGPEPAGLGRRPCPYE 586
+ E AG P GPEP G +P P E
Sbjct: 103 KREDVSAGEDCGPLPEGGPEPRSDGAKPGPRE 134
>gi|80861463 proopiomelanocortin preproprotein [Homo sapiens]
Length = 267
Score = 35.0 bits (79), Expect = 0.20
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 501 LVTLVAAAVSYLRMEQKLRRGVAPRQPRIPRPQHKVRGYRYLEEDNSDESDAEGEHGDGA 560
L+ + A L E + G QP P+ V G+ + S + G G G
Sbjct: 43 LLECIRACKPDLSAETPMFPGNGDEQPLTENPRKYVMGHFRWDRFGRRNSSSSGSSGAGQ 102
Query: 561 EEEAPPAG------PRPGPEPAGLGRRPCPYE 586
+ E AG P GPEP G +P P E
Sbjct: 103 KREDVSAGEDCGPLPEGGPEPRSDGAKPGPRE 134
>gi|195947401 doublesex and mab-3 related transcription factor 2
isoform 1 [Homo sapiens]
Length = 226
Score = 34.7 bits (78), Expect = 0.26
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 543 EEDNSDESDAEGEHGDGAEEEAPPAGP-----RPGPEPAGLGRRPCPYEQAQGGDGPEEQ 597
E+D+ + DAE E GDG E A P P R GP+P R P + + G GP E+
Sbjct: 50 EDDDGVDEDAE-EEGDGEEAGASPGMPGQPEQRGGPQP----RPPLAPQASPAGTGPRER 104
>gi|5729806 doublesex and mab-3 related transcription factor 2
isoform 1 [Homo sapiens]
Length = 226
Score = 34.7 bits (78), Expect = 0.26
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 543 EEDNSDESDAEGEHGDGAEEEAPPAGP-----RPGPEPAGLGRRPCPYEQAQGGDGPEEQ 597
E+D+ + DAE E GDG E A P P R GP+P R P + + G GP E+
Sbjct: 50 EDDDGVDEDAE-EEGDGEEAGASPGMPGQPEQRGGPQP----RPPLAPQASPAGTGPRER 104
>gi|153945850 doublesex and mab-3 related transcription factor 2
isoform 2 [Homo sapiens]
Length = 561
Score = 34.7 bits (78), Expect = 0.26
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 543 EEDNSDESDAEGEHGDGAEEEAPPAGP-----RPGPEPAGLGRRPCPYEQAQGGDGPEEQ 597
E+D+ + DAE E GDG E A P P R GP+P R P + + G GP E+
Sbjct: 50 EDDDGVDEDAE-EEGDGEEAGASPGMPGQPEQRGGPQP----RPPLAPQASPAGTGPRER 104
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 34.3 bits (77), Expect = 0.33
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 562 EEAPPAGPRPGPEPAGLGRRPCPYEQAQGGDGPEEQ 597
E PPAG PGPE G G P P E + D E++
Sbjct: 545 ENQPPAGSNPGPESEGSGVPPRPEEADETWDSKEDK 580
>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
isoform 2 [Homo sapiens]
Length = 1512
Score = 34.3 bits (77), Expect = 0.33
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 562 EEAPPAGPRPGPEPAGLGRRPCPYEQAQGGDGPEEQ 597
E PPAG PGPE G G P P E + D E++
Sbjct: 458 ENQPPAGSNPGPESEGSGVPPRPEEADETWDSKEDK 493
>gi|38201625 eukaryotic translation initiation factor 4 gamma, 1
isoform 3 [Homo sapiens]
Length = 1435
Score = 34.3 bits (77), Expect = 0.33
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 562 EEAPPAGPRPGPEPAGLGRRPCPYEQAQGGDGPEEQ 597
E PPAG PGPE G G P P E + D E++
Sbjct: 381 ENQPPAGSNPGPESEGSGVPPRPEEADETWDSKEDK 416
>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 34.3 bits (77), Expect = 0.33
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 562 EEAPPAGPRPGPEPAGLGRRPCPYEQAQGGDGPEEQ 597
E PPAG PGPE G G P P E + D E++
Sbjct: 545 ENQPPAGSNPGPESEGSGVPPRPEEADETWDSKEDK 580
>gi|38201619 eukaryotic translation initiation factor 4 gamma, 1
isoform 4 [Homo sapiens]
Length = 1403
Score = 34.3 bits (77), Expect = 0.33
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 562 EEAPPAGPRPGPEPAGLGRRPCPYEQAQGGDGPEEQ 597
E PPAG PGPE G G P P E + D E++
Sbjct: 349 ENQPPAGSNPGPESEGSGVPPRPEEADETWDSKEDK 384
>gi|93204881 Rab interacting lysosomal protein [Homo sapiens]
Length = 401
Score = 33.9 bits (76), Expect = 0.44
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 530 PRPQHKVRG-----YRYLEEDNSDESDAEGEHGDGAEEEAPPAGPRPGPEPAGLGRRPC 583
P P+ K++ YR E + DE+ + G EEEA P P P P + L C
Sbjct: 334 PPPESKIQSFFGLWYRGKAESSEDETSSPAPSKLGGEEEAQPQSPAPDPPCSALHEHLC 392
>gi|13236549 major facilitator superfamily domain containing 11
[Homo sapiens]
Length = 449
Score = 33.9 bits (76), Expect = 0.44
Identities = 16/64 (25%), Positives = 34/64 (53%)
Query: 121 AALLYTPVLIRFFGTKWMMFLAVGIYALFVSTNYWERYYTLVPSAVALGMAIVPLWASMG 180
A+ L TP ++ G + MF + Y+++++ ++ ++V +G+A LW + G
Sbjct: 61 ASNLITPSVVAIVGPQLSMFASGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQG 120
Query: 181 NYIT 184
N +T
Sbjct: 121 NCLT 124
Score = 33.5 bits (75), Expect = 0.57
Identities = 45/197 (22%), Positives = 81/197 (41%), Gaps = 25/197 (12%)
Query: 349 YSGFEVLF------ACTGIALGYGVCSVGLERLAYLLVAYS--LGASAASLLGLLGLWLP 400
Y+G E+ F C G +G L L+ + + LG S LL +
Sbjct: 248 YTGLELTFFSGVYGTCIGATNKFGAEEKSLIGLSGIFIGIGEILGGSLFGLLSKNNRFGR 307
Query: 401 RPVPLVAGAGVHLLLTFILFFW----APVPRVLQHSWILYVAAA---------LWGVGSA 447
PV L+ G VH + +++F AP+ V Y+ ++ L G+G +
Sbjct: 308 NPVVLL-GILVHFIAFYLIFLNMPGDAPIAPVKGTDSSAYIKSSKEVAILCSFLLGLGDS 366
Query: 448 LNKTGLSTLLGILYEDKERQDFIFTIYHWWQAV-AIFTVYLGSSLHMKAKLAVLLVTLVA 506
T L ++LG LY + F I+ + Q++ A + + L + +L V+++
Sbjct: 367 CFNTQLLSILGFLYSEDSAP--AFAIFKFVQSICAAVAFFYSNYLLLHWQLLVMVIFGFF 424
Query: 507 AAVSYLRMEQKLRRGVA 523
+S+ +E + VA
Sbjct: 425 GTISFFTVEWEAAAFVA 441
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 33.5 bits (75), Expect = 0.57
Identities = 28/112 (25%), Positives = 37/112 (33%)
Query: 485 VYLGSSLHMKAKLAVLLVTLVAAAVSYLRMEQKLRRGVAPRQPRIPRPQHKVRGYRYLEE 544
V L + HM + LL + R + + P QP P+ + E
Sbjct: 164 VRLVMAQHMIRDIQTLLSRMETLPYLQCRGGPQPQHSQPPPQPPAVTPEPVALSSQTSEP 223
Query: 545 DNSDESDAEGEHGDGAEEEAPPAGPRPGPEPAGLGRRPCPYEQAQGGDGPEE 596
S+ E + EE AP P P PA G P P A P E
Sbjct: 224 VESEAPPREPMEAEEVEERAPAQNPELTPGPAPAGPTPAPETNAPNHPSPAE 275
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.141 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,115,200
Number of Sequences: 37866
Number of extensions: 1292467
Number of successful extensions: 7328
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 7139
Number of HSP's gapped (non-prelim): 194
length of query: 597
length of database: 18,247,518
effective HSP length: 108
effective length of query: 489
effective length of database: 14,157,990
effective search space: 6923257110
effective search space used: 6923257110
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.