Guide to the Human Genome
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Name: BTBD1 Sequence: fasta or formatted (482aa) NCBI GI: 13376848
Description:

BTB (POZ) domain containing 1 isoform 1

Referenced in:

Additional Interaction Domain Families
Tripartite Motif Family

Other entries for this name:
alt prot [385aa] BTB (POZ) domain containing 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         48           4
 C cysteine            2.3         11           2
 D aspartate           4.4         21           1
 E glutamate           6.6         32           2
 F phenylalanine       6.2         30           4
 G glycine             7.7         37           2
 H histidine           1.5          7           1
 I isoleucine          5.4         26           2
 K lysine              4.1         20           2
 L leucine             9.3         45           2
 M methionine          1.7          8           1
 N asparagine          3.3         16           3
 P proline             6.6         32           5
 Q glutamine           3.9         19           2
 R arginine            5.6         27           2
 S serine              6.2         30           2
 T threonine           6.4         31           2
 V valine              5.6         27           2
 W tryptophan          0.6          3           1
 Y tyrosine            2.5         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   BTB (POZ) domain containing 1 isoform 1 
BTBD2                 0.765   BTB (POZ) domain containing 2 
BTBD1                 0.717   BTB (POZ) domain containing 1 isoform 2 
BTBD6                 0.377   BTB domain protein BDPL 
BTBD3                 0.360   BTB/POZ domain containing protein 3 isoform a 
BTBD3                 0.360   BTB/POZ domain containing protein 3 isoform b 
KLHL7                 0.081   kelch-like 7 isoform 1 
KLHL7                 0.081   kelch-like 7 isoform 2 
BTBD9                 0.080   BTB (POZ) domain containing 9 isoform a 
BTBD9                 0.080   BTB (POZ) domain containing 9 isoform a 
KBTBD10               0.062   kelch repeat and BTB (POZ) domain containing 10 [Hom...
KBTBD5                0.059   kelch repeat and BTB (POZ) domain containing 5 [Homo...
LOC149478             0.057   hypothetical protein LOC149478 
BTBD9                 0.055   BTB (POZ) domain containing 9 isoform b 
KLHL3                 0.053   kelch-like 3 
KBTBD8                0.052   T-cell activation kelch repeat protein 
KLHL2                 0.052   kelch-like 2, Mayven isoform 1 
KLHL2                 0.051   kelch-like 2, Mayven isoform 2 
KLHL4                 0.050   kelch-like 4 isoform 2 
KLHL4                 0.050   kelch-like 4 isoform 1 
KLHL20                0.050   kelch-like 20 
KEAP1                 0.050   kelch-like ECH-associated protein 1 
KEAP1                 0.050   kelch-like ECH-associated protein 1 
KLHL18                0.048   kelch-like 18 
KLHL17                0.047   kelch-like 17 
MYCBP2                0.047   MYC binding protein 2 
IPP                   0.047   intracisternal A particle-promoted polypeptide isofor...
IPP                   0.047   intracisternal A particle-promoted polypeptide isof...
KBTBD7                0.045   kelch repeat and BTB (POZ) domain containing 7 [Homo...
KLHL28                0.045   BTB (POZ) domain containing 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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