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Search of human proteins with 132566538
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo
sapiens]
(163 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo sa... 345 1e-95
gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo... 338 9e-94
gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor... 338 9e-94
gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor... 338 9e-94
gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor... 336 5e-93
gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo sa... 323 4e-89
gi|4504989 luteinizing hormone beta subunit precursor [Homo sapi... 242 9e-65
gi|115430099 thyroid stimulating hormone, beta precursor [Homo s... 96 1e-20
gi|66528995 follicle stimulating hormone, beta polypeptide precu... 86 1e-17
gi|4503791 follicle stimulating hormone, beta polypeptide precur... 86 1e-17
gi|134031945 SCO-spondin [Homo sapiens] 34 0.049
gi|21735550 mitogen-activated protein kinase kinase kinase 10 [H... 34 0.064
gi|56118234 proline rich 6 [Homo sapiens] 33 0.11
gi|113951734 steroid receptor RNA activator 1 [Homo sapiens] 33 0.14
gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isof... 32 0.24
gi|7662086 Rho guanine nucleotide exchange factor (GEF) 11 isofo... 32 0.24
gi|10863911 serine protease inhibitor, Kazal type 2 (acrosin-try... 32 0.32
gi|23397498 transmembrane protein 92 [Homo sapiens] 32 0.32
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 32 0.32
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 31 0.41
gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo s... 31 0.54
gi|146134388 YLP motif containing 1 [Homo sapiens] 31 0.54
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 31 0.54
gi|16936522 wingless-type MMTV integration site family, member 1... 30 0.71
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 30 0.71
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 30 0.71
gi|19924103 synapsin II isoform IIa [Homo sapiens] 30 0.92
gi|19924101 synapsin II isoform IIb [Homo sapiens] 30 0.92
gi|161019170 mucin 5AC [Homo sapiens] 30 1.2
gi|116284392 mucin 2 precursor [Homo sapiens] 30 1.2
>gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo
sapiens]
Length = 163
Score = 345 bits (884), Expect = 1e-95
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 1 MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
Sbjct: 1 MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
Query: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG
Sbjct: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
Query: 121 PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 163
PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 121 PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 163
>gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo
sapiens]
Length = 165
Score = 338 bits (868), Expect = 9e-94
Identities = 160/163 (98%), Positives = 161/163 (98%)
Query: 1 MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
M +GLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
Sbjct: 3 MFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 62
Query: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG
Sbjct: 63 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 122
Query: 121 PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 163
PKDHPLTCDDPRFQ SSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 123 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
>gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor
[Homo sapiens]
Length = 165
Score = 338 bits (868), Expect = 9e-94
Identities = 160/163 (98%), Positives = 161/163 (98%)
Query: 1 MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
M +GLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
Sbjct: 3 MFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 62
Query: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG
Sbjct: 63 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 122
Query: 121 PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 163
PKDHPLTCDDPRFQ SSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 123 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
>gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor
[Homo sapiens]
Length = 165
Score = 338 bits (868), Expect = 9e-94
Identities = 160/163 (98%), Positives = 161/163 (98%)
Query: 1 MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
M +GLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
Sbjct: 3 MFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 62
Query: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG
Sbjct: 63 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 122
Query: 121 PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 163
PKDHPLTCDDPRFQ SSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 123 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
>gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor
[Homo sapiens]
Length = 165
Score = 336 bits (862), Expect = 5e-93
Identities = 159/163 (97%), Positives = 161/163 (98%)
Query: 1 MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
M +GLLLLLLLSMGGTWAS+E LRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
Sbjct: 3 MFQGLLLLLLLSMGGTWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 62
Query: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG
Sbjct: 63 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 122
Query: 121 PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 163
PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ
Sbjct: 123 PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ 165
>gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo
sapiens]
Length = 155
Score = 323 bits (828), Expect = 4e-89
Identities = 153/155 (98%), Positives = 153/155 (98%)
Query: 1 MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
MSK LLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
Sbjct: 1 MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
Query: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG
Sbjct: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
Query: 121 PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGP 155
PKDHPLTCDDPRFQ SSSSKAPPPSLPSPSRLPGP
Sbjct: 121 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP 155
>gi|4504989 luteinizing hormone beta subunit precursor [Homo
sapiens]
Length = 141
Score = 242 bits (618), Expect = 9e-65
Identities = 112/132 (84%), Positives = 119/132 (90%)
Query: 1 MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
M +GLLLLLLLSMGG WAS+EPLRP C PINA LAVEKEGCPVCITVNTTICAGYCPTM
Sbjct: 3 MLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPTMM 62
Query: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
RVLQ VLP LPQVVC YRDVRFESIRLPGCPRGV+PVVS+ VALSC+C CRRST+DCGG
Sbjct: 63 RVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDCGG 122
Query: 121 PKDHPLTCDDPR 132
PKDHPLTCD P+
Sbjct: 123 PKDHPLTCDHPQ 134
>gi|115430099 thyroid stimulating hormone, beta precursor [Homo
sapiens]
Length = 138
Score = 95.9 bits (237), Expect = 1e-20
Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 27 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVL----PALPQVVCNYRDVRF 82
C P T+ +E+ C C+T+NTTICAGYC MTR + G L AL Q VC YRD +
Sbjct: 22 CIPTEYTMHIERRECAYCLTINTTICAGYC--MTRDINGKLFLPKYALSQDVCTYRDFIY 79
Query: 83 ESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 118
++ +PGCP V P SY VALSC+C C +DC
Sbjct: 80 RTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDC 115
>gi|66528995 follicle stimulating hormone, beta polypeptide
precursor [Homo sapiens]
Length = 129
Score = 85.9 bits (211), Expect = 1e-17
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 27 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQV--VCNYRDVRFES 84
C N T+A+EKE C CI++NTT CAGYC T V + PA P++ C ++++ +E+
Sbjct: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PARPKIQKTCTFKELVYET 78
Query: 85 IRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 118
+R+PGC + + +Y VA C C C +TDC
Sbjct: 79 VRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112
>gi|4503791 follicle stimulating hormone, beta polypeptide precursor
[Homo sapiens]
Length = 129
Score = 85.9 bits (211), Expect = 1e-17
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 27 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQV--VCNYRDVRFES 84
C N T+A+EKE C CI++NTT CAGYC T V + PA P++ C ++++ +E+
Sbjct: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PARPKIQKTCTFKELVYET 78
Query: 85 IRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 118
+R+PGC + + +Y VA C C C +TDC
Sbjct: 79 VRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 34.3 bits (77), Expect = 0.049
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 17/76 (22%)
Query: 47 VNTTICAGYCPTMTRVLQGVLPALPQV-----VCNYR-----DVRFESIRLPGCPRGVNP 96
V + C+GYCP+ T V+P P + C+YR VR ++R C G
Sbjct: 5072 VEVSYCSGYCPSSTH----VMPEEPYLQSQCDCCSYRLDPESPVRILNLR---CLGGHTE 5124
Query: 97 VVSYAVALSCQCALCR 112
V V SCQC+ C+
Sbjct: 5125 PVVLPVIHSCQCSSCQ 5140
Score = 28.5 bits (62), Expect = 2.7
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 104 LSCQCALCRRSTTDCGGPKDHPLTCDDPRFQASSSSKAPPPSLPSP--SRLPGPS 156
+SC C + C G D P D+ P PSLP+P S LPGPS
Sbjct: 1497 VSCVDGTCLGAIQLCDGVWDCPDGADE------GPGHCPLPSLPTPPASTLPGPS 1545
Score = 27.3 bits (59), Expect = 6.0
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 67 LPALPQVVCNYRDVRFESIRLPGCPR--GVNPVVSYA-VALSCQCALCRRSTTDCGGPKD 123
LPA P +C+ + E L GC R G P ++ + SC L R T C P
Sbjct: 3226 LPATPTPLCSGPEAEEEPCLLQGCDRAGGWGPWGPWSHCSRSCGGGL-RSRTRACDQPPP 3284
Query: 124 HPL--TCDDPRFQASSSSKAPPP 144
L C+ PR Q P P
Sbjct: 3285 QGLGDYCEGPRAQGEVCQALPCP 3307
>gi|21735550 mitogen-activated protein kinase kinase kinase 10 [Homo
sapiens]
Length = 954
Score = 33.9 bits (76), Expect = 0.064
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 88 PGCPRGVNPVVSYAVALSCQCALCRRST-TDCGGPKDHPLTCDDPRFQASSSSKAPPPSL 146
P P G V + L+ L S+ +DC + + D +A+ ++ +PPPS
Sbjct: 724 PARPHGRREDVGPGLGLAPSATLVSLSSVSDCNSTRSLLRSDSD---EAAPAAPSPPPSP 780
Query: 147 PSPSRLPGPSDTPIL 161
P+P+ P PS P++
Sbjct: 781 PAPTPTPSPSTNPLV 795
>gi|56118234 proline rich 6 [Homo sapiens]
Length = 272
Score = 33.1 bits (74), Expect = 0.11
Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 96 PVVSYAVALSCQCALCRRSTTDCGG--------PKDHP-LTCDDPRFQASSSSKAPPPSL 146
P S A AL+ RRS + G P + P L PR Q + PPP L
Sbjct: 24 PAASAAAALAPSATRTRRSASQAGSKSQAVEKPPSEKPRLRRSSPRAQEEGPGEPPPPEL 83
Query: 147 PSPSRLPGPSDTPILP 162
P P TP P
Sbjct: 84 ALLPPPPPPPPTPATP 99
>gi|113951734 steroid receptor RNA activator 1 [Homo sapiens]
Length = 236
Score = 32.7 bits (73), Expect = 0.14
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 92 RGVNPVVSYAVALSCQCALCRRS--TTDCGGPKDHPLTCDDPRFQASSSSKAPPPSLPSP 149
RG N ++ L Q RRS T P+D PR AS +S PPP P P
Sbjct: 25 RGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQD-----GSPRVPASETSPGPPPMGPPP 79
Query: 150 SRLPGPSDTPI 160
P P+
Sbjct: 80 PSSKAPRSPPV 90
>gi|38026934 Rho guanine nucleotide exchange factor (GEF) 11 isoform
2 [Homo sapiens]
Length = 1562
Score = 32.0 bits (71), Expect = 0.24
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 114 STTDCGGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGP 155
S+ G + P PR + S PPP LP P R+ GP
Sbjct: 125 SSMGISGLQQDPSPAGAPRITSVIPSPPPPPPLPPPQRITGP 166
>gi|7662086 Rho guanine nucleotide exchange factor (GEF) 11 isoform
1 [Homo sapiens]
Length = 1522
Score = 32.0 bits (71), Expect = 0.24
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 114 STTDCGGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGP 155
S+ G + P PR + S PPP LP P R+ GP
Sbjct: 125 SSMGISGLQQDPSPAGAPRITSVIPSPPPPPPLPPPQRITGP 166
>gi|10863911 serine protease inhibitor, Kazal type 2
(acrosin-trypsin inhibitor) [Homo sapiens]
Length = 84
Score = 31.6 bits (70), Expect = 0.32
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 77 YRDVRFESIRLPGCPRGVNPVV-SYAVALSCQCALCRR 113
YR RLPGCPR NPV S + +C LC +
Sbjct: 31 YRTPNCSQYRLPGCPRHFNPVCGSDMSTYANECTLCMK 68
>gi|23397498 transmembrane protein 92 [Homo sapiens]
Length = 159
Score = 31.6 bits (70), Expect = 0.32
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 106 CQCALCRR----STTDCGGPKDHPLTCDDPRFQASSSSKAPPPS--LPSPSRLPGPSDTP 159
C C CR + DC GP + P R + S S+ PP S + PS P P++ P
Sbjct: 78 CFCRNCREPEPDTPVDCRGPLELPSIIPPERVRVSLSAPPPPYSEVILKPSLGPTPTEPP 137
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 31.6 bits (70), Expect = 0.32
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 110 LCRRSTTDCG-----GPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPI 160
LCRR G GP+ L P ++ ++ PPP P P LPGP +
Sbjct: 393 LCRRRKAGRGRKADAGPEGRLLPLPMPTGLVAALAEPPPPPPPPPPALPGPGPVSV 448
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 31.2 bits (69), Expect = 0.41
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 131 PRFQASSSSKAPPPSLPS--PSRLPGPSDTPILP 162
P+ S +S AP P +P+ P + PGPS +P LP
Sbjct: 747 PQAPDSQASPAPAPQIPAAAPLKGPGPSSSPSLP 780
>gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo
sapiens]
Length = 564
Score = 30.8 bits (68), Expect = 0.54
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 125 PLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILP 162
P + P + S+ PPP P P+R P PS P P
Sbjct: 525 PPSAPTPPIPSPPSTLPPPPQAPPPNRAPPPSRPPPRP 562
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 30.8 bits (68), Expect = 0.54
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 121 PKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILP 162
P P + P S SS PPP LP PS L P+LP
Sbjct: 566 PPSLPTSVPPPGMPPSLSSAGPPPVLPPPS-LSSAGPPPVLP 606
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 30.8 bits (68), Expect = 0.54
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 113 RSTTDCGGPKDHPLTCDDPRFQASSSSKAPPP------SLPSPSRLPGPSDTPI 160
RST + P+ + PR +A +S +PPP S P + P PS PI
Sbjct: 668 RSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPI 721
>gi|16936522 wingless-type MMTV integration site family, member 10B
precursor [Homo sapiens]
Length = 389
Score = 30.4 bits (67), Expect = 0.71
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 103 ALSCQCALCRRSTTDCG----GPKDHPLTCDDPRFQASSSSKAPPPSLPSP----SRLPG 154
A++ C+L + + CG G +D L + QA S K+ P SLPSP S PG
Sbjct: 131 AVATACSLGKLVSCGCGWKGSGEQDR-LRAKLLQLQALSRGKSFPHSLPSPGPGSSPSPG 189
Query: 155 PSDT 158
P DT
Sbjct: 190 PQDT 193
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 30.4 bits (67), Expect = 0.71
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 131 PRFQASSSSKAPPP--SLPSPSRLP----GPSDTPILPQ 163
PR ASS + PPP S P P LP G +TP LPQ
Sbjct: 298 PRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQ 336
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 30.4 bits (67), Expect = 0.71
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 131 PRFQASSSSKAPPP--SLPSPSRLP----GPSDTPILPQ 163
PR ASS + PPP S P P LP G +TP LPQ
Sbjct: 298 PRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQ 336
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 30.0 bits (66), Expect = 0.92
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 135 ASSSSKAPPPSLPSPSRLPGPSDTP 159
A+S+S APP + P P R P P+ P
Sbjct: 44 AASASAAPPTASPGPERRPPPASAP 68
>gi|19924101 synapsin II isoform IIb [Homo sapiens]
Length = 478
Score = 30.0 bits (66), Expect = 0.92
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 135 ASSSSKAPPPSLPSPSRLPGPSDTP 159
A+S+S APP + P P R P P+ P
Sbjct: 44 AASASAAPPTASPGPERRPPPASAP 68
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 29.6 bits (65), Expect = 1.2
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 30 INATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQ-VVCNYRDVRFESIRLP 88
IN T+ + +GC VN T C G CP ++ Q C R V E++ L
Sbjct: 5999 INTTI-LWHQGCET--EVNITFCEGSCPGASKYSAEAQAMQHQCTCCQERRVHEETVPL- 6054
Query: 89 GCPRGVNPVVSYAVALSCQCAL 110
CP G + +Y A+ C L
Sbjct: 6055 HCPNGSAILHTYTHAVQVLCGL 6076
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 29.6 bits (65), Expect = 1.2
Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 7/106 (6%)
Query: 16 TWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVC 75
T + R C + T V GC + +N C+G C T C
Sbjct: 5064 TCTPRNETRVPCSTVPVTTEVSYAGCTKTVLMNH--CSGSCGTFVMYSAKAQALDHSCSC 5121
Query: 76 NYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGP 121
+ + + CP G + +Y SCQC T CG P
Sbjct: 5122 CKEEKTSQREVVLSCPNGGSLTHTYTHIESCQC-----QDTVCGLP 5162
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,384,038
Number of Sequences: 37866
Number of extensions: 460279
Number of successful extensions: 4321
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 4028
Number of HSP's gapped (non-prelim): 357
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.